Map Locations of contig_1574104 (5736 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1574104

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16660 4 3391 bp AK376419 Available Available None





CDS Structure of MLOC_16660






Contig Sequence (5736 bp)

>contig_1574104 5736 assembly3_WGSMorex_rbca.fasta
AAAGAGTTACTTTGATGTGAGCGCGCTGATTGTGCTATTTGGAGTTTTCTTCTTCTTATT
CTTCTTCGATCTAGGATGGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACGTCAT
TCTTTTATCGTTTTCTTGTTCTGTTTGTAGGGACACCTGATTATGTATCAAAATTTGTCT
TGCAAAAAAAGGAGTGATGAGGATGATGGCTTTCATGTTTGCTTGGATGATGTTGGTTCG
GTGGTGGCCTCTGATATGTCAGATAAGATCTTGGGCTATCATATTCGTTGATTATCCATT
AGATTCCTCTATTCATTGCAGGGTATTGCATGTTGTGTTGGGTTTGGTGTGAAGCGGGTC
GCCTCGTTGTGGCCGCGGGCCATTCGTTTTGTGTTCATCAATGCAAGAGGAAAGTAACTT
GATAGTTTGAAATAAAAATGATTCCCACAATATTTGGTCATGGTGTAGTATTCTTAAGGT
AACTTATTTTTTTCTTGTAGAAAGTGGAAAGATATGTCTAGAGAATAAATGTACATGTAA
ATTTGGTACATAGTTTCAGTACATGTGCATTTCACGTTCAGTTATATGTAGGTTGCTAGC
ATGCTTTTATTTGAGGTCTTTGCTAAGTGATGTTTGTGTGGCTGAATTAGTCAACTAGAT
GGCAATTCCTCCATCGGAATTGATTGTCATATAGAGTTTACCTTTGATTTCATATATGGT
GTGCTTGAGTCCAACTCTCGTGAGAAAATTCAATGTAGTTTTCTGCATTAATTAGCTTGG
TTGATATCATTTGGTTACAACAACACGGGTCACCTCATGTATGTTCCACTTGATGACAAA
TTAAACTGCGACATGTAAGCTTAGGAAAACACATTAGTTTTCGGCTAGGGATTTCATGGC
TATCGAACTTTGTGCTCATATGGGATCCTTTGTTATCTGATTTTATTCTGAAATGCACTC
TACTTGTCTTCAGTTCTGTTCCTAACCAATGAAATATTACTTAATGAGCATATGCTTGTT
TGGCTACCTCACCTGTATATTCATACGAGGGTGCCCCATGCTACTGTTAGATGAATCGTG
GATCAAGAGTGCATAGTGGAGGGTGGAGAGAAACCAACATACGTCTATTGCAAATGTTTT
TCTCGGCAAATGCATTCAATTTATTTGACAGCAACACAACATTTGCTCAAGTACTTTTGG
ACATTGATACGGTGTTACTGTTTTAGTAAGATGGAGTGAGACGGATGTTGATACTCTGCT
CCAGCAGCCCAAGTGAAATCAAGCATGGTCTGCTGATACAAAAAGCACAAGACTCTCCAG
CTGCATATGTAGCAATATTCACAACTTATGCCCTCCAATCTTAATTTCTTATGTTATGTG
CTATTGCTGAGAATTTGCAGAGGCAATCTGCTAAGAGGAAGATTGTGGAAAGAGCTCGCG
AGTCGAGAGAAAGCATTTTGTTTCTCACGTTTGTGATCCATTTACACACTTTGATTATTA
TTTCGCACTTCATTACTCTTACTATATCCTTGCAGTCATGGCAGTGCATATGATGCTTTT
TAGATCTGGAACATTAAGGTATTAAATTTTCTCGAAGAAAGAATCAGAATGACTCCTCAT
GTTTGATTTAAAGTTCATAATCTCATTGTTGATGTTGTTATTTGAATTAAATTTAGATGG
ATTTGAGATTTTATATTTGACGTGTCCGGTTGTAAGAAGGCAAATTTGAGGCTTCACCAG
CTTCACCAGTCAACGCGTTCGCGGACATTCAGGGGGCAGATTTGCAAGTTGTGGATGTGC
ATGCTCTTATCAATCATTGTGCATACCCTTCGTAATGAGAGTATCATAGGTAATATCATG
CATGTCAACTAGGCAATTTTGATGAGGTGTCATGGAATTAAATGAAGAAAGAAATGTTTG
AATATCATATCATGATACCGTATCANNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATGAC
AATAAATGAACTATCCTATGATACTATCATATGATACTATGCATTATGGATGTGGTATTA
TAGACTAGTATCATATGCACGATACTGCTACCTCCATCACAGTTTATAAGGCACGCACGT
GTACCTAGGTCGTCAATTTGACTTATAGAAAATCTATTGTTTAATATAAAAATTATATCA
TTGGAAAATACAAAAGTTTTTAATGATATATTTTTTGAAATATATGCTTATCATTAAGTT
GATCAAATTAACAACCTAGATACATGTGCCGGACTTATAAACTGAGATGAAGGGAGTACT
ATATGATACTACCCATTACAATCAGCCTAAACCAGGCGAGTAGCATTCCATACGACCTCG
GCGATTGACATCTTGTCTACCTCGCTTCACCACACCACACGATCCTCTGGACGAAGGGCC
GCTTCACCACACCACACGATCCTCTGGACGGAGGGCCGACGTTCAGGTATGTGCTATGCT
GCCTCTTCTTCCCAAAAGGAGGGCAAACTATGCTCCAGGTGTAAGCCAGCTTCTCCATTT
TCTGGTTTGCTCCGGTGGTGGTGTCGCAGCTATCTTGTCATCACCCCAGGTGGTACTATC
GTCTGATGATGCTTTCTTGACAGGCAAAGGGCCCAGTTGCAATCTCTAGTGTCTACGGTC
CTTCCTGCAAATCTCAAGGACCAAGTTGTAATTTCATTTGTATCATCACAAAATATACGA
GTATACCGTAGCAGTCAAGTCGGACCGGAGTAACATGAGTCTGGAACATGGTAAATACAA
CTCTACGTACGCAATTTAGAGCACCTGGCGTGGCAAATATGTGCAATTCAGCGTCATAAA
TCCAAGAGTAATATCCAGCAAGTCACAGTGCAGTAGTAGCTACACAAAAGGCGGTGTTTC
CCAGTTGAACGACAGAATGATAAAGGCACAACATAGTTCAAAAGGAGCATATTTCTGAAT
TCATCTGAGTTCGACTGAAATGTCATAACAAGAGTAGACAACTACAACCCAAACCTTCTG
TGGACATGTGTTCGTACCACATGAAGCTGTGTGATGACCTGCAAAGCAGAGACATTCAAA
CGTAGACGTTGGAAAGATGAATAGCCTTCAACTGATCACTGCAGACTGTGCAAACTCTTC
TATGTACTGCAGCGACCCCATGCCAACAATGTTCAGAATAATGATGGCGGGTCCATATGT
GCCCATTGATCCAGTAAAGACGCTGGCAACAACTAACAATGTGGTGAACAAGACTGTATG
GCCTCGGTATGGGACAGCTGGTACTACCGAAATCAAAGTTTCCATCACACAGCGGTGACC
AGGTACCTCTCCCTAGATCATATTGCCGCAGTCGGCCGCTCCACAGCGTTGGGTTGAGGA
TGGTGACGGAGTTCCCCTGAACGGATGGTAGGTTGCTGCAGTTAACAGCCATGCTCCAAG
TGCCAATGAACAGGGCATGGTCGCCGATGCTTGTCAATGGCGTGGCAGGGACTCCGAGCA
GGAGGTCAGCAAGCCGGATAACCACAGGCCGGGAGTGTCTGTCGGTATAGCTGACCAGAA
AAGGTTCAGAATTGCACTCCACCAGGTAAGGCTTAGTCATCTGACTAGCTGGACATGTGG
CGATCATTTGTGGTGGTCTAGACGGCCACGAAGAGGAACTGGAGCTATCTGGTGGATCGA
CGCGCATGATCTGTGAGGGTTTGTTTTTCTAGCTCCTCACCATGTAGAGGCTGCCACGGA
ATGGCAGTGCTGTCCTCATACCAGTCATCATCCAGCTTGTGTGAGTCCAGTGTTTTTCAC
CGGTGGATACGTACGCCATGCGCTCGGCATGACTGAGCGCGAGCATGATGGTGATACTGC
CACCCACATGGACGGTGACAGCCGCGTGGACCATCCGTAGTCGAAGATCATAAGGGCCAT
TTAGAAAGACCCCAAACTTACTCATGTACAAGCAAAGGGAGGCAAGGGGAGGAAACTCAG
CAACATCACCGGTGAAGGGGTGGCGGAGGCAGATAGCAGTGTCCTTCTTGCGCTGCAGGA
GGAGGCCGTCAGGGCAGTCGAGCACGGAGTGGTCCTCGAAGCATGGGAGGTGCACGCGGA
TGAAGATGCCGGTGTAGATGTTGAGGAAGCGGATGTAGCCGCCCAATGCAGTGTGGCCGG
GGTGAAGCCCGTTGCCCTCTGGAAACATCATCCATTGCCGTGGGTGAAAGCGCTGGTCTA
CCACACCACGGCCGAGTGGGCAAGGAGTGGCGGCACGCCACTGTTTGCACACCGCGCGGA
ACCAGACGTAGTGCAGCAGGTCGCTATAGAGTACCCGGTCAGCGATCAGCTCCAGCAAAT
CAGCATTCAGCGACTCCCAGGACAGAACACGGGCTTGTTCAGTGTCGCGCCCACTGCAAC
GGTGCACACAAACAGCTTGCTCAACTTGGTTGGCAGGTTTGCTTGCTCCAACAGTTGCCA
TCCTGATCCCCCCCCCCCCTGCGAAGGAACAAGACTTGTCAGCTGAGTTCTCCCAGCTCA
AACTTGCTTAATGGCATTGCCTTAGAGCATTCATCAGCAATTTCATCAAAATATACATAG
AGATAGCATCAATAAACACAACAAGCTAACATCGCTATCAATTTCTTCTATATGCACAAG
CAAAACATGGCATCAGTTCGTATTACACACAAAAGAAAAGAGAAAACGGAGAGGACAGGA
GTTTATCTTGAGCCCGAAAGATTGACATTCAAAAATCAATTTGTTCATTTTATCTGAACT
GTGGCGAGTTGTTTGGTCACTAGCAGCCACTGTAGTTCGTTGGTTTGTGGTTGTGTGCAG
TTCGGCCACCCGACAGATCGGTACTTGGCGCAGACCATAGACATGGTCGTCGGCATCAAG
GACTCAGAGCGCGCAGTGAGACGAGAGTGTTCGACGGCAGCAGAAGCTCCGAGCCGTGCT
TGAGGTGACAACTATGGTGGGTGCAGGAGAACTAACGTTTTTGATGCCCTATTATGGAGC
AGCTGTTGGAGACGGCACTTGCTCATGCCCAAAAAGATCAGTTTTGATGCCCAATTATTT
TTACAAAGATGCAGATTAATCGGGCATGATAACCCTTAGCTTCTTCCTCGGTCTATTTTG
ATCCTAGGTATTAGAAGGATTTTATTTTGGTTGTTGCCCCGCTCTGCTAGGGGTTATAAG
CATTTCATTCCAGGTCCGTATGGTCTGCTGTGCACCATTTAAAATCCTAATAAGTGTATG
CCTGTAGCTAGCTTGCACATGCTTGTGTTTTGGCAAACGTAGCAACAATACATCATGTAC
TCCTATGTCCTGGCATATAAACGCAAGAAACTCAGGAACACCCTGCTGAATTAAGACCAG
TGACCCATGTTCATCTAATTGATTTACACTCTTCTGTATGTGCATTTTTAGCTTGGACGA
AAGGATTTACCATTTGGAAACATTATGTTTCATTGTGCTCGTTGTATACCTTTTTTTTAA
GGTCATCTCGTTGTATACCAATCAGCAACATAACAATGTCTCATACATCTTTTTACTGTT
TTGTAGCAACATAGAGTCCTCATTATAAACCGAGGATTTTTACTAGTTACATATACAAAA
GAAAAGAGAAAACGGAGAGCACAGGAGGTTACCTTGCTCTGTGTAGTGGTAGATCGGAGC
AGATGCAGCTGGTGGTGGCGCTGCGCACCGGGAGGAGCGGACGACGGCGGCCAGAATCAG
GCCACCAGCGACGAAGACGGACGGATGGGGTGGCCC