| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_1574043
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_16645 |
1 |
962 bp |
None |
Available |
Available |
LOC_Os01g40470.1, FRAME:-3, EVALUE:7e-21, 13101.m04144 protein vacuolar ATP synthase subunit d, putative, expressed |
| MLOC_16644 |
2 |
1985 bp |
MLOC_16644.1 |
Available |
Available |
LOC_Os01g40550.1, FRAME:+2, EVALUE:3e-42, 13101.m04150 protein hsp20/alpha crystallin family protein, putative, expressed |
| MLOC_16643 |
2 |
1372 bp |
MLOC_16643.2 |
Available |
Available |
LOC_Os01g40570.1, FRAME:+2, EVALUE:1e-175, 13101.m04152 protein outer mitochondrial membrane porin, putative, expressed |
CDS Structure of MLOC_16645
CDS Structure of MLOC_16644
CDS Structure of MLOC_16643
Contig Sequence (5567 bp)
>contig_1574043 5567 assembly3_WGSMorex_rbca.fasta
CATCCGGATGTATATAGACATACTTTAGATTCATTCATTTTGCTCCGTATGTAGACACCT
AATGAAATATNNNNNNNNNNNNNTATTTAGGTACGGAGGGAGTAGTACAGTATATTTTTT
CTTGAAAAAATACGGAGTAGAAAAGAAATAGTCCTCCGATCCACCACCACGCCACGCGCG
GCATGAGGAGGGTGACGAGGTCCCTCTCCCTCCACGTTGCCGACGCGGGGGTCCCACGAC
AGCTTGCTCGGTCCCGCCCAGCACGACGCGACACGAGCACACGAATCATCCAAAATCACG
GGAAACACAGACATTTTGTAAAGTGGAAACGGTAGGGGCAAGATCTGCCACGACTCCATT
TTAACTGGTCGCCGCAGCCTCCGCACGGCGCTGCCGCTTCTTCCCTGCGATCTCTCTCCC
GCTCTCTTCTCCCCACCACTGACCACCAATTCGTCTCCGTCGCCGGCCGCCATGGCTCCG
GGCCTCTACACCGACATCGGGAAGAAGACCAGAGGTGCCGCCAGCCTCTCTTCCCTCCTC
TGATTCTGATTCTGATTGCTTCTCCGGTGCCGATCTTGATGATGCTGTCATGTGATGGTT
TGCACGCAGATCTGCTCTACAGGGACTACTGCACGCACCAGAAGTTCACCCTCACCACAT
GCACCCCCGAGGGCGTCGTGAGTACCACTATCATCCTCTCCCCCGCGCTTCTTCCGTAGC
GATCTCACTATTTTGTGTCCCGTAGAGCAGCGTCTCGGTTACGGTCCGCGTCGCATTCCC
CACATTGATCCACTACTTACTCTGCAAATGCATGTTAGAATCAGGCCCCGCCGATCTCTA
TTTTGTGCCTCTGTACCGCCGTTGCCCTGCCGACACAGATCGCCGCCGTGTGCCACTCTG
TCGAGCTCTTCTCATTCCGTGTGACTATGGATGGACCCTCATGTGTTACCATACCAGGGT
ATTAAATCTCTATTTAGGGACCATCTCTTCACTCTCGCAGCGAGCTGCCAGAACTTCCCT
ATTTTCCCTTCCACGGATTGTGCATCTTTTGATTCCTTTAGACGAAGCATTTCTTGAGGA
GATGAACTCATGATGGCTTAGGTAACCATGTCTCTCGATATGATTTATGCGCTCCATATT
GATGGTTTGGTTTTACCTGTATGGCTTCGGTAACCGTGTCTCTGTCTAGTATTTGTGCGC
TAGCGCTACTACATATTAATGATTTTGGTTTACCTACAGGCAATCACAGCTGCAGGGACT
AGGAAAAACGAGTCAATCTTTGGCGAGCTTCAGACCCAGCTTAAGAACAAGAACTTGACA
GTTGATATCAAAGCAAACTCAGAGTCAGATGTAAGCCGCCTCTGCTCCAACTCTCCCTTT
TTCTCTCACATGAATCATGTATAAACATCTGATTGCTTGTTTTTCCTTGATGTTATTTCT
CACATATTTGGCTTTTCTGTTATGCTTCATAATATTAATTCACAGCAATGTACAGTTCTC
GAGATTTGTTTGATTCGCTGATGAATATTTCACATCTTCCAGCTTCTGACAACATTCACA
GTTGATGAGTTTGCAACTCCAGGGCTCAAATCAATTCTCAGCTTGGTTGTTCCAGACCAG
AGGTCAGGGAAGGTATAGTTTTCTTATCACTCCGTTTGCTTAAACTTCTAATCTGCAATA
TGGTGATCACCGCGATAGGAGATTTAATTTGTATTTTTCTGCCTTGACAGCTTGAACTCC
AGTATCTCCATGAATTCGCCAGTGTGAATGCAAGTGTTGGGCTGAACCCCAGCCCTATGG
TTAACCTTTCTGGTGTATTCGGAAGCAAAGAACTATCAGTTGGTGTTGACGTTTCATTTG
ACACGGCAACTAGCAATTTCACTAAGTACAATGCTGCTTTAAGCCTCGCATATCCGGATC
TTATTGCTTCACTCCACCTGTAAGTATCTTCTCTATGCGCAGCTATCATATGTAGTAATT
CTTTCAAGATTGATAGATAATGCTGATTAGCAATCTGGTTCCATACTGAGGTGTCAAGTG
AGGTGCTTCATCGATATTATAGTAGCATTTGCTCTGGTAATGAACTTTCAAATCTCATCC
AGGAACAATCATGGTGACACCTTGACTGCGTCTTACTACCACTTAGTAAAGTCACATTCA
AGCACTGCTGTTGGAGCAGAGCTGTCCCACAACTTCCCAAGGAACGAGAGCACATTGATA
TTTGGATCGCAGCACTCATTGGACCCGCACACCAGTGTGAAGGCACGCTTCAACAATTAT
GGCATGGCCAGTGCCCTTGTCCAGCATGAATGGCGACCAAAGTCACTCGTCACCATCTCC
GGCGAGGTTGACACCAAGGCAATTGAGAAGAGCACAAAAGTTGGTTTGTCATTGGTGCTA
AAGCCTTGAGATGCATGGCTGGGACCAATGTTTTGGAAAGAAAAACAGTTCTGCTGGATT
GGAATAACATGGCCCCAGGCCATCTCTTGGTGCATTCATTTTGATCTTGAATTCCTCCTT
TGTCCACATAATCTGTTTCCTAGGCAAATGTTAGCCTTGACGAGCTCATTGTTTTGATTT
GATGAGCAGCGCCTGTCAATAATTTCTGGTGATTAAGATCTATTGTGAATCTTGTAAAAT
GTGACTGATTGACGGTTACGGACAAGTGTGTTCATTCATTCCTTGATGCCCTTGTTCCAG
TTGATCCACTTGGATGTGTGTCCTCGTCTATGCATGCTTACAGAAGTACCGAGACTACAT
ACGGATCAAAATAGATGAATGAAGTACTGAGACTACATACGGATCAAAATAGATGAATTG
AATCTATATTTTAAAATATGTCTATATATATCCATATGTAGTCTTCTGGTGTAACCTCTT
AAAAGACTATACTGTATTTAGGAACAGAGAGAGTAGTAACATTGTTTGAGGAGCTGCGTG
TTGTGGTATACTGGTAAACGATACTAGAAGCTAAAGAACAAAACCTGGAACAAAAGTTAT
CATACTTGGGACAAGCTGTTTATTTATGTGAGGTATGAGGACGTTGGGAGAGAATGGTAA
AAAATGTCGATGGTTTAGTTGTGCGGGTTATTTTGTTGCTTTGACGAGACGGAGTGAGGA
TGGCGCACGCCGGAAGTTAAATGAGCCCAAGACACGTTAGACGTCTACCCCCACGATGAA
TTCTCCTTGTGCCAGCCCCTCAAGAAAAGCTTGGAATAGTTTAGCCTTACCGACGCAAGG
AAGCAAGCAAGCGCTGCGTACATGGACATGCTATATATGAGGCGCGCGGCACCTCCAACC
CGATCGATCAGTACGCGGCTGAAGCTAGCTAGCTAGCAAGCATGGCGAGAGACATGGCGA
GCAGGCAAGAATCGCCAGCAGCGGCGGCCGACTGGGACTACGAGTGGGTCCACGGCGACG
GCGGATATCTCCTCCGCCTCAACCTCCCAGGTACGTAACGTACGCTACGATGCGCGTTGG
TGACTGACTCCTCCATCCTACTGAGATGAATCAACCTCTGCACTTGTACCTACTGAATTG
TGTGACATTATGTTGATCAAGGGTTGAAGAAGGAGGAGTTCCGGGTGCACGTCGACGCCG
CCGGCCGGCTTGACATCCTCGGCCCCTCAACGGCGGATGGAGGAGCCGGGAAGATGCGGC
TGCACCAGGTGTTCCAGCTGCCAGCCACATCCGACCTCGACGCAATCACCGGACGGTACA
ACGCCAACGTGCTCACGCTCACCGTGCCCAAGCTGTCTTCCGCCCCGCCCAAGGGCAAGG
AGGCCTCCAACTCGAGCGACGTCGGCGACCAACCAACGGATAAGAAATCCAAGCTTAGCC
GGGAGGCGGAGCGGCTGATCGAGGCGGCCATGGCAAGGTTGCAGGGGAGACACAAGCAGG
AGACGGCCAAGGAGCAAAGCAGCAAGGAACCCCCGGCCACCAAAGTGGACCAGAGGGAAA
AGGAGCCCAAGGCAGAAAAGGTGGTGAAAGGAGATGATGGTCAGGACGGCAAGGCCAAGG
CCGCGGCCGCTCCTCAACACAAGGAGAAGCTCGAGTGTGAGACGACGCAGAGACAGAGGG
AGAAGAAAGGCTGCTGGAAGGAGCGGGCGGCAGAGGAGGGGTTCAAGTGGGCGGATGCCA
TAGGTAAGAACAAGGAGGTGATCGCCGCCACCGCCGTTGCTGCCTTCACGCTAGGCGTCT
TCGTCTCCCATAGGCTCTTCTCCAGAAACTGAAGAAACTGAAAATGCAGCCGCCTTCACG
CTAGGCGTCTTCGTCTCCCAGAGGCACTTCTCCAGAAACTGAAAATGCTCTTCCCCAGAT
ATATACGTGAGGAATAAATTCTCGTGGATAATAAAGAGTTTAATGATACTATCACATACG
TACATGACTAAAACATACTGTACATGAAACTTAAAAATAAAATGGAACTATCACATGCTC
CCTCCGTCCAACAAGTATTTCAGGATGGAGGGACTACATGACCAAAATACATACTCGCAT
GGCCATCTTATTTTTCATATTCCTGCATTTTCATGATTTATTTCTTTTTTTTCCTCCACG
AGGCTTGGGAAAATACACAATAATTAACGACGATGCCCAACAATTTCCATGCCCTTTCTA
AGCTGCACAAGTTACATTTTATAATAATGGAGTAAAAGAGTTTTGCCAACAAGCCATTTG
ATATCTTGGGTGTACATTTTACATTGCCAACAAACTGCACAAATAGTGCCACCCACTACG
GAAATAAACATCATTTATTTAGTTTACCGTACAACTGCGCCTTTTATTTTGCTACAAAAA
CAAATAATGATACACTACTCCAGTTCTAGCTTTTCAGCCGCATAGAAAATAGGAACAAGG
GGAATAACAAATCATGAGCTTATAAAGAGTGCAATCGATTGTGCCATCATCAAAGCGGGC
CTTTTGTACAGCCATATGCACAGTAATAGGGGCCGATTAAAAGATCGTCACGACGCTGTC
ATGGACCCTGTTCTTCTGGTTCTGGGCAACGCATTCGGAGATCCACATCAAGTTCCTTAT
CTCCTGCTCTCGTAGCCTCATGTACGCAAAGAAAACAGCATAGTGGAACTGCACAGACAA
GGAGAGAACATCAGAGCTCCCACCTTCAATTCTAGAGTAAGGTCTGAAATAGTGGCACAC
AGAGGTCACAAGTTTTCTCAGACAAAGGCACTAGCACTAGCACTAGCACTTCGGCATTTT
TTAGAACTACCCAGACAGATCTATAGAATCATGTGCAGAGCTGTGGCTTGTTGGCACATA
CTCCCTCCGTCCCAAAAAGCTTGTCTTAGATTTGATGTATCTAGACACGTTTTACAAGCA
TGTATGTATGCATCACAGCATCAGTACTGCATGTGGCTGGACGTGTCATAGGCCCTGTTT
GGAACCACCCAGNNNNNNNNNNNNNNNNNNNNNNATCTATTCTGTCTCCAAACATGACAG
CTTATGGTGTAGATTATAAAAACTAGATGGATAGATTATTAAAAACTCATAATCTACTCT
ACACCAGCTAAAATCAGATTATGAATTGCTAATGACCCATTACCCTT
