Map Locations of contig_157384 (5980 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_157384

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16577 2 1403 bp AK248246.1 Available Available None





CDS Structure of MLOC_16577






Contig Sequence (5980 bp)

>contig_157384 5980 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCCCTCTCTTAATAACTATGTGGTGCTGGCTTAAAAACTATGAAACG
TGGTGCTCTGACAGAGAACTAATTGCAAGACACAAAGCATATTAGAATACAGCGGAAGAC
CAGAACTAGCAAATCAGTGTGGCCTTTAGACATTATTAGCATATAAACTGTCCTGACTCA
CCATTTGTACTATCTTTAAGAAACAACATTTTGACATTTCAAGTGGCTTTTACCCGAATA
TCAGCATTTGTTGCTGGAGCGATCTACATACTATACACCTCTCCCTCTCCACCTCCCCCT
TCCCTTCCACCTTATTAAAAATATCCCTATATTATTAGCCCAACAGTGGAGTTAACTTGC
AAGGATTTGGGTGGTTTCTGACCATAGCAATGTATGAGTATTTAAATAGTACTTCATCTA
CTTGAAACATGGAGGTCAATAAATGCTAAAAACTGCATACCAGAACAATGTCATGAAATA
AATAAAAAGGAACAAAAGTGAATTAGAACAAGAAACTCACCAACAAATGGCAACACAAAG
TCTTGCGGTTTATTGACTTCTTTGACAGATGCTATATAATACCGTCCAGCGGTCTCAAAA
TCACCCTGAATTCAGTTAAATAATCAAAAATACATCACATATTCAGGGTTGTAGACTAGA
CTCTCAACAAGGAAATCCAAAGTGTCAGCACAGAGAACAAGTAAAATAATACCCAACTAA
TTCAATGGGTATATGAATGGGGTACATCACCTTACTATGGTATGATCTGGCTAGATTATA
GTAGGATTGTGATTTCAGTAGTACATGACTGCTTGAAGACAGAGCAGTCTCACTCAGTTG
CTCAACCACAAAATGCTGGCCAGTAAAGAAATAATGGTTGGCCAGGTGGTTGAGTGCCAA
AGTGCAATAAGGATAAATTTCAAAGGCTCTTCTCATTTTCTCCATCCCACTGCGAATTTC
ACCAGCTATAGCAAAGTTGCAATACTTAGAAAATAATCAGAAAAAAATGTGAGAAGGAAA
TTTCTTGTCTGTCAAGAGCATTTACCTTCATTTGTTTGCAAGTCCATGATCGCGAGTGCT
ACTAGCGCATCAAAGTTTTCAGGGTCCAACTGTGAAGTGAGTGTAAGTGAATAAAGGCAT
GAATTCAACTTAAGAGATAATTATTCAGATAAAATACTTGCCTGTAAAACTCGATCAAAA
GCTTGTCGAGCCCTGTCTAGCTGGCCAAGTTTGTATCGACAAAAAGCTATACCAAGCCTT
ACAGCAGCAGGACAATCTGCATAGCCCCGCAGGGCTCTCTAGAAAGATGATTGAAATTTA
TAACATATACTGCAAAATCATGGAATTGTCAAAAGAACCTGAGCTGTCTCCAACCTTATA
GAGTTCTAGTGAGTTCCTATAAAGTTCCAAAGCTTTCTTGTGTTGTTGTTCCGTATCACC
CATCAGGAAATAAACAGAAGCCTGTACTGACAATATTTGTGACATGAAGATTAGAACAAC
TGATAAGAAATATGTCAAAAAATATTTGTTAACACATGCTTCTTTTTAGTTATTAGTTAG
TCCCTACGTCTTTATCGATCATATGATAAGCATCAAAGCATAGGATAAACCATAAGAATT
AACTTGGTCCAGTGAATGAGCAAGCATATGAAGGTTGCGGTTTCATTAGTATAATAGTAT
ACAATTACAAAAGAGTAAAATACATGAGGTCCTAAAACTATGAGGGGTGTCAAGTTAATC
CTACAACTTCAAAAGTGCAGATTCGGGTCCCAAAAATCTATTCTGTTCATCACAGATCCT
AAGCAGCTCAGACCATGTTGGACCTGCTCACGTGGCAGGTTAACCGTCGCCACCTGACAC
AGGTCCCATCCGAAATAATTGAATGAAAGAACATTTTGCATAAACACCCTCGGTAGGCCT
CTTCTTCTCACATGTAGTCCCTCTCTTCTCTTCCCCACACGCTCAGTCATGGTGGTAGGC
AAAGGCCCTGTGTGGAGACGACGAGATGCTGGAAGCCTGTACACTGAATGCCTCGTCAGA
CAGGGCAGGCGAGAGGCAAGAAGGTTCTGGAGGAACTCAAGGAGAGAAGCATAAAACGAA
TCGTCATCTACGGCTATCCCCTAAATGTGAGCTCCGCGTCAATCCCGTCCATGAGCGGCG
GACTGGGCGGGTGGGAGCGGAGCAGTGAGAAGGTCGTGGAGAACCCAAATGAGGAGAGAG
GCGTAAAATGAATCGGTATTTTTCACTTAGTGGTAGCAAATTTTTGTAACTTCCTCCAAC
TCCGCTGATCGCGCTCCATGGATCCAGAAAATAGCAGCTCCACTGTTACGTACTACGGGT
CAACTCAGATCCTAGCTCTCGGCTCTGCAGAGCTGGGCCGTTCAGTCCGGCTTCACACAC
GGAGTCAACGGAGCGCAGAGCTGGTAAGAATCCAAACGGGCCCTTACAATCTAGTATTAA
TACTAAAAGCAAACTGCGGTCATTCAAAAGTACAAATTATACTTGTTTAAACAAGCATTA
TAGAAACCTGAAGAAAATTACCTGACCAAGAAGGGCTGGGAAATTATCCCCATCATCATC
CAAAACAATCTTGAATGAGTCAGATGCCATTTGCAACTCACCCTTGGCCACACAGAGTTG
ACCTAGATAGCAACGTCAATAATTAAAATGTTAAAAGCCATACTCCTCTAGTCGGAACAG
CAACATGACAAAGCACTTTGCTGGTAAATAAAGTGCCCCCTTTTAGTCCAGTACTCCTAG
GTTCTAGAGAGCAGTTGTATGATCTTCTCTATGTCTAATAAACCAGTAAGAGAAATCAAC
ACTTACATAATACATAGCAGACGCAACAAATAAAACCAAGGATGTAAAAATGAATAAACT
GCATGACTGTAACACCCAAAGAACACCCAACCAAGCAACGATTAGGCTTTCATCCATGCT
TCATCTGAAGAGGTTAACCATGTGGGTTTGGATCATTGCTAAGCATTACAAGCTATTTGT
AACAGAAATTCAACTAGCCACATGGAACTAGCCGCCAGACTACCAGGCCTCACTGGGCCC
ATGGCATCACAGTTTAGATATGCTATATAACTTTCACAAACACATTGCTGATCTTGTGTT
AATCAAATTTACAATGTTCTGGTGAACTAACGAACACAAAACACTCATTCTTTCTGCTTA
TCACAAACTAGACAGGCAGAGTTATATAATGTCTTGTAGCATGTCTTTGATTCTGAAATT
GATTGTCTATGATAGAGAAGTTACAAACAAATACAACAAATCATTCAACATAAACAGAAA
TATCAAACTATCAGATGCCAAAAATTCAAACAGTCACTTCAACCAAAATGATGCTACACT
TAACTGAATGAAGTGCTACGCAAACCATAACCAAAGATGAAAATGTGTTACAAAGAGATG
CACATAACAGTCGCTAAACTATAAACCACAACTGAAATGTTCTAAAGTGGTATAACCTCT
TCCAATCCATGTAGACGGTTCAGTTTCATCTATCCTCGACGCTCTATTGTAGTACTGAGT
TGCGTCTTTGAAATGCGCTTCCTTCTGTGGTGCTCTCTCAGCCTTTCCCAAGAAAGTATG
AAAAGCACCCAAAGCATTAAGGATGGCTATCCGCTCATACTTCACATCGGCATAATAATC
ATCAATTTCTGCAGAGAAGAGGGAATGATTCAACAACAGAAGATTTATATAGAAATTTAA
AGAAACAATGAGAAAATGAACTAGTGTTGTATAATCTATTATTTTTCGGATCATAAATTA
TTGCGCAGGATAATGATAAGAATTATAATGTAAATTCACCTGGTCCGGATCCTTCCTCTA
AAATCTGTCGGAACTGCTCGATCTTTCCTTGCTTGAAGTATTCTCTCTGTGGCAATAATT
TTCAGAGGTAAATAAGAAACATCCGGACATTTTCCTCAATACTAAAAAAGGTTAGCTCGA
TTTCACAAGAAAACTACCTATAAAATTACAAGACAGGGTATCTGCAAGTATAGTAAGTTT
CACCATGAGACTAGAGCGTAGATAAAATGCAGGTCACGAGTGTGAGGACTGAGATTTGGG
GAATGAAACTCTGGCACAGCTTCTCCTCTTCTTCAGATCTTCCACTCAAACTACCCGTCC
AAACAAATCAGGACGACACCCTCACTGCCAAAACGTCGCTAGCACCACCCCTGGCCGAAA
CAGCTCGGGTTGAACAACCAGGGCAGAGCAGAGAACGGAATGACAGGCGCACGCACACGC
ACACGCACATTTGAAAAATCCCACCAAAATCGGTCAAACCCTCGGAAAGCCCACCTTGAA
GCTGAAAAGGGTCGCATCAGCGGGGCGAGGGTCCGCCAGAACCGTAGCCGTAGAAGTTCC
TCTATACACACCGCCGACGACCTAGACCTAGACCTAGACCTAGGAGAGATTGCAGGGGAA
GCTTGGAGTCCTGAGAGCGAGGGAACCTACCGCGATGATGAGCCAGAGGTGGAGCGGGGC
TTGCTCCGCCTTGAGGATGTCGAGGATGTCGGAGGCGTCGGTGGGGAGCAGGTCCAGCGC
CACCCGCACCTCCTCCTCCGTCCCCTGCACCGGTATGTACACGCTCGCCATCCCGCCGTC
GCTCCCTTCCCTTCCCTTCCCTTCCCTTCGCCGCCGCCCAAAGGGAGAGAAAATCGTGGT
ATAAATGACAGGAGAATAGGAGCAGACGGGAAGCGCTATGTCTCGCTTCTAGCGAGACCT
AGCCTGCTGTCGCGTAAGGCGACTCCATAAATGGACCGGCCCATACGCGAGGGAGGCCAC
GGGCTCGTTTTTTTCTATGTGTTTTTTTACTTTTTTCTTTTTTTTTTCTTTATACTTCGA
TACAATTTAAATAAATATATTAAGAAATCATTTTAGATAAAACAATTAGAAAATATGTTA
ACCAAGCATATGGACAAAATGTCTATAAAAAATCATGTATACAGAAAATATACAATGTGT
GTGAAAAAAGTTGATTGTGTATTTTAAAAATAATATTAATCAAGCATTTGAAGAAATGTT
GAACAAATATTTGAAAAAAATTACTTAAACATTTGAAAAATGTTAAATATTTATATAAAA
AAGCTGACCATGTATTTAAAAAATGTTAATCAAGCATTTGAAAAATGTAAATATGTATAG
AAAAATAATTAACATGTACTTCCTCGTCTCAAAATAAGTGTCATAAATTTACTACTAAGT
TAGCATAAATTTTATACTAAAGTAGCGACACTTATTTTGGGACGGAGGGGGTATTTGAGG
AAAATGATCAAGCATTTGAAAATTGTTAAATGTGTATAGGAAAGCCTTTGACCATGTATT
CAAAATGCTCTTTGCAAAGGTCACTACATCCTCTCTTCACTTGTTGTAATTTTGGAGTTT
TTTTTTCATAGATTAGTTTATTCTAAATATTTTATCACTTAAACCATGCGTTCAAATCTC
GAACCATTTTTATCGTTGGATTCCTCACGTCGAGACTTTCAAGACTACATTTTTTTCATG
AAGAGACCCAAACCGAAAGCATGTCTTTTTAACTTTTCCCCTTTTCGATGAGGCACAATT
GTGCCTCTCACAAAAGCAAATCTGTGTCTCCTTCGAAAGAAGAAAAACATGTTATTTTTT
AATTTTCGAAAGGCACATCACGGAAGCAAATCGGTGGCCGCACGAGAAGTAAATATGCCC
CTCTCACGAAAAAAACACTTTTTCCCCTTTTTTACGAGACACTCGGAGAAAGAAATTTGT
GTATTCACGAGAAGTAAATATGTACCTCCCACAGAAGAAGAAGAAAGAAAGAAAACATGT
TTTTCCTTTTTGTTAGGGCATATTTCTCCNNNNNNNGTTTTGGTGATTGATGACAATGTG
TGTGCGGACTAATTGTGTGCATTGAGCATTTCAGATNNNNNNNNNNNAGGCACAAGACGA
TTCGGTGCCCCTCCGAGTCTTTCAAAAACGGTTGCTTTCT