morexGenes - Barley RNA-seq Database

Contig contig_1573667
Source Contig contig_1573667
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1573667 (6767 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1573667

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16543	2	777 bp	AK252947.1	Available	Available	None
MLOC_16542	1	1214 bp	None	Available	Available	None
CDS Structure of MLOC_16543

CDS Structure of MLOC_16542

Contig Sequence (6767 bp)

>contig_1573667 6767 assembly3_WGSMorex_rbca.fasta
TAAGATAGGGTGGATGGGGGGGGGGGTGGTCGTGTTTTTTGTGGTGGGGGGGGGGGGGGG
GTACAAGGGTTTGGACGGCAAGGGTGGTGCTCCTTCATGGAGCTCCACTTGCCATCCTTT
TATGCCCTTTATGCCCTTGATGTGTGACATAAAAGGGTGGGTGTTTTGGTAAATTTTTTG
TGCCAACCCTATCCCTTGGTTTTCCTATAAATAGAGGTGGAGAGGAGCTCTCCACACTCA
CTCCAACTCCCATACAAATGACATGCATAATCTCGCTCTCTCTCTCTCCTTCCATTAAAA
TAGTTTCATAGAGCTAAAAGGTTGTCTGAGTTCCGACAGAAACTAGTTCCGGACAGTAAA
GCCCTGCAGGATAGCTGACATTGTATGTGTGCAACCCCGCAGAGAGATCGTAGTTTCGAT
CTTAGTTCAAGAGTGCCTCCCGCAGGGCTGTTCGTGTGACCGTGCAAGATTCTATGAATG
CCTTCCGAAGGTCTGTCTGTGACACCGTATGAGGGACTGTCCGACTGCCTCCTTAAGGGT
TGTCCAAGGAGCAGACCAAAGAGAGCATTCTCATGGTTGGAAGGTTGTACATCCTAGCTA
CAAGGTGCACCGCCGATCTTCATTGACTCCACTTCCGTTGCGCCTTCGAGTCGGTAATGA
CCAGATCAAAAACCTTGAAAGCATCTCCATAATGATCCTAGGAGCAGTACCGGAAAATTT
TGTTTTCTGCCGCGTTCCCCTATAGTACATATATGACAACTAGTTAATCACACATCACAA
TTATGTTTGATCTTTCATGACAACCATGGTTCGACCAGACGTGGCAACTCCTATTAGTTT
CACATTACAACTATATTTAACGATACTTCCTCTGTACCATAATATTTGTTGTTGGGGAGA
AGTAATCTAGTTTTCCTTAACAATAAATATTTAGAAACAGAGGGAGTACATAGCAACTAA
ATTTGATCACACATGACAATTACAATTAATTAGACATGAAAATTATAGTTAATTACACGT
GGCAACTAAAGTCCACACTTAGGGGGTGGAGATGAGTAGTTGTCAATGGTTTTGCATGCG
GGCCATCGTAGCTGCCCCCGAACATGTGTCCGCCCATACAAGGCCGTGTGGGCTGACTCC
TAGATACGATAGAACGAGTTATCAAGGTCCTTTGTGTCAGCACATGTGGTGAATATCAAG
GTCCTACAGTAACTCTTGTCAATCATGCAGCATACGGGCCAAAGGTGACCCTGTAAATTC
CAGTGTCTCATCTTGTCTCTCAAGGTTCTGTGACACGATTAACATTGGATTAACCCCCAC
CAAGAGATAAACAGACAAAAGCGGGGTGAGAGTTTCACAATCATTTACATTACTTCCATC
CTCACCTGATCCATGGCCAAATACAACACAACCTCTTCTGGGACAAAGAATACAGCGGCA
GCAGAAGCAGCAATTAAGTTCTGCCTACGTAACCTCAGTATACAAGATTGTTGCTATCCC
AGAAAAATTAACAAGAAAAAAGATTAAGCATATATTCACCAAAATCAACCAAAGAAACAC
AGCAATAGCCTTTCATTTTGATTTGTAAGCAATTCAACATAATAGGCAGACCAGAAAATA
ACATAAATCACTTCATTTGGTAATTGTCTGATCAACAAGAACAAGAGAATTAACAGCTCC
GGTATCTTTTTTCCTCGACCTCTGCCGAACAAGAAACAAGAATACACGCTGGATCAACTG
AACGCTTGAACAAGGAAATGTTACCCCTAGCCCTCCAGACCAAACCCACGGGGACTGGTC
ATGGACAGCGGAGAGCTGGGAGTGATGCCATGAAAAAAATAGCGGCAAAGAATAACCTGC
CATTTTGTTCGCGTAAACTTCCATAAGTTCAGTATAGCCTAACCAGAAATAATCAAACAA
ACCAGTGCTGAACAAGGCAGAAAAATCAGAACAAAAGCATTGGCCAGAAGGAGCACAGCT
CTAAATGAAAGATAGCAATAAGCAGCAGCGACAATCTGAACATACCAAGCAACGAAACTG
AAAAATAGAAAAACATAGAAATTCAGCCATGGCTGACAAAAACATATCTAACTAACTGGA
CAATAAGAAAACTGTAGAGCAAGGAGGCCAACTGATTGATTCAACCAAAAGAGGATATGT
TCACCCAGCCTCGCTCACCAGCCACAGAGGAAGTGGCCAGCAAACAGCGTGAGAACCAGG
CAGTGATGGATTTCCGAGCAGCACAACGACTCCGATGCCATGAGAAACTGAGGCATAAGG
TAACCTGCCATTTTGCTCGCATGAACTCTCACTACGTGTCTAATCTAATAAAAAAATCAA
CAAACTAACCCAGTGTCAAACGAACAATTAAATAAATGCAGGTTAGGAATAGGAGCTCCA
GTAGTAGATAGCAAACCACTGCCTGAACATATCAACCCTATCTTCTCTAGAGGGTAAAAC
AGTCAGCCAAGGCCAACAAAAGAAATCCCAATCACTCAACATGCAGGGGACGACACACTG
ACTTCAACCAAGATAAAATATGTTGACCCATCCTCACTCACCAGCCCCAGGGTAAGTGGC
CAGCAAACAGCATGAGAACCAGGCTTGATTGATCTCCGAGCAGCACAACGACCCAGATGC
CATGAGAAACTGAGGCAAAGGGTAACCTGCCATTTTGCTCAGTTAAAACTCTCACTACTT
CTACACTGGTTACAAAATCAGACCCCAACAAAACAGCAACAACAAACCAAGAACGCAGCT
TCAATTGCAAGCAAATAGAAGTTCGATTTGCGTGTAACAAACAAATCGAATAAATAAAAA
ATAAAAACTAGAAGAGAGATAGAAAAGAAAGAAAAATAAGGTAATTATTCAAATTCAAGA
ACAGGCAATATCAGCTCAACATCGATTAACAAAATCAAGATATCTTCTATGCAAATTCTG
AACAGTAAGAATACAACAGATGCAACGGTGCAAGCAGAAATGACTGACCAATTAGGCATT
GAACAATAGAAGGTGCTTAGAGAAAAAAAAAATTATTCAAGCATTGCTGCTTATTATTTG
TAGAAGGTAGGCGGCTAGGCGCTTAATTAGGCAGCCCTCCTGTAGAGATAAGCACTCATG
CTTAAGCAGAACTCGGTTTATTTTACTATAATAACCTCCCTAAGCACATTGCATTGTACA
AGGCCTTAAACAAGGAGAGAAAATAAATGTTGCCACCATGGAGAAAGTGGCCAGCCAACA
ATGGAGAACCAAGATATCAATGTCCGAGCAGTACAACGACTCCAATACCATCAGAAACAG
AGGCAAAGAGTAACCTGCAAATTTGCTCGGCTAAACTCTCACCAACTGTCCATCTAGCCA
AACCAGAGCAATCAAATAGAGAAGGAACTTCGGTGCTAGCTCAGTTAATACCATTTTCCC
AGGAAAAGGACGGCAAAAAAATTGTTGTTTCAAGCGCTCAATGGATTCGGCTAAAAATAT
AAACATTTTCCAAGATTGCTGGGCAGTCACACAAACTGAGTACACCACAAGCATACATAT
TTTCTAGGTCAAGGTGGGTCTGAAAGAATTCAAATAGTAAATACTAGTAATAGAAAGATC
CTGGGGTCACAGCAAAGCATCAGTAATATACAAGCAGTGGGTTCTTTTCTGTACTCTTAG
GAACAGGGTGAACATATCATCGTACGATAACAAAGATATTACAGTTATGTCATACAAATC
GATGTTCGGAATACAGAAACATCACAGGCTCTTCCAGCATGCATACTGTCCATACAACAT
AAAGCGTACAGCAGCATCATTTCATGTACCTATGCAGAAACTTGCGGTGGAAATCACTTC
TGATGGTGTCGTTGATGAACCGTTTCGGTGTCTTGGTCTCTCCACGAGCCTGGTTCTTGA
ATACAACATCATCATCCCACCTGCAACAAACACATGTATCAAACATGATTAACCTCATCA
TAAAGCATGGCAGCATTACTTTCTTAAGAAAGGATAGCCGCAACATAAAAGAAGCATACA
ATAGAATACAGTAGGCATCACTATTCCTAACCTTCTCTTCACGTTGAAGGAGCCGGAGTT
ATTCATATTGATCAGCGGGTTTCCTCGCATCAGCTCAGCCTCCTTCATCTTGGCCTCTTC
TTCTGCTTGCTGACGCTCCTGCAGCAAACAGACGTGATTTCACATTAATACTCCAAACCT
AAAGAATAAGAGCGCCTCGAAATGAATACAGAGAATAAAACAACAAACCTTTCTAAGCCT
GTCCTCAGCTCTTTCTTTTTTAATCCTTTCAAGCTCTGCCATTAGGGCCTCGGTGTCATC
GTCATCGTCATCATCATCGCTGAATAAAAGTTTCAGTTTGATAAGTAAGATATAGAATAA
GATGGGATGATCAGCTGAACTACAAAACTGGGCCCAGATAAACAGCTCTGTCCCAACAAA
ATATCTGGACAATTGCTGCATTATTATTTTGTTGTAAACATAAACATAATCCGGCTGCAA
CGGAAAGCATGCTAGCCAGCATCAGAATGTGTATCACCCAATACCGAAGTGTATGGTAGA
TAACTCATATTGAACAGTTTCAGTTCCAATCCAGCATACAGTTCATTCATGCAGTTAGAG
GATATATCAGTTAATCCCATCCATGCAACAACAAGAAGTCTCCTCGACATTTTGAACGGG
TGTGATTGATAAACTACTGAGCAAGAACTAAACAGACCTTTCATCATCACTTTTGAGCTC
CACGTCAGAGTCGTCTGCATCAATTTCACGTGGAACTATCTTATCTTCATCCCTTTTTGA
ACCTGTGATGACCAGAAGAACGGAGCATGTAAATAATTATGCTGCCTTGAACCTAGGCAC
TAAACAGACTTTGGTAAAGCATAGTGTCACCGACCTTCTAAAAGCAGGCTTGAACTTTTT
CGCCGGTCCCTCTCGTCTGTGAGAAAAAATAGAGTGAACCAATCAATTATAAATTTACAA
TTCCTAGGTACAAGGAAACAATAATAGACAAACATCACGGAAGAAAAGATATGGCAAACA
CTATCTGCACAAATGAGGGAGAAAGTGCAGATGGATTCAGAGGTCTTACCAACATAGGAC
TTATCCTTGGATGAGAAGTGCTTGCGTTCACGCTCCTCAAGTTCATCCCTAAGATTCCTC
TTCTGTACCTCCTCTTGAGTTTGTTGTCCCTCTTTTCTGCACATAAGAGGGGGGAATGTC
AGTATAAGTATGTATTGAGAGTAAGGCATCTAAGAAGAGCTATTAAGAACTGCCAGCCCT
TTTTGTTCAGGATTCACAGGGTCAAGAACCAAACCAATCATGTAAGGCTGAAGAAAGAGT
TTGGCAATATAGGGTATTCTTTGTTCTGGTTAACAGGTAATGAATCCCATATGAAGAACC
AAATATATGAACCATGGTAAGCAATTTGTTCATAGATTTACTGTCTTGATGCAGCAGCAG
CAGACAAATTCAGGTGCTTAAGTTAAACGTTACAGTTACACTTGGTGCTAAGTAGCTACC
GCAGCTCCAAAATGCAAAATAGTTGGTTGTCCTGGTAATAAATAGCTACATTTTGTTTGA
TATACCCATGTTTTTCCACATACGTGGACTTATTTAGGTCAGGTGTGTTCAGTACGTTAT
TTAACCAGTAGTATTGGTGCAGTAAACAAGTGTCTAGGTTTGTGCAGAAATCGACCTAAT
CCTGGCAACACTGAACACAGTAGCAGACTATTTGCAAAAATTGCCAGAGAAAAGCCGGTT
GTAATGACCTATTCAGGGCCAAAACATAAGCAATATAACCATAGTTGGCAAAACACCAAC
CACATCCTGCGGCAATGCAAGGACTGGCGACCGTTAGCACTCTATCGCACAGAGCTCAAT
GAGCAAGTTCAGGGCCAGCCATCCCTATTTTAGCCATATACGGTGTCCATGATTCTGGAT
AACAGGTAATAAACCCCAAATGAGGTACATATGCACCATGATGAACCATTTTCTTATGGT
GCTTAAATCTATTCTCCATATGCTGCAGCAGCAGACATGATTCAGGTAGTCCTACAGAAC
ATTAACACTTGGTGCTAAGTAAGCTAGCCGAGCTCCAAACATCTAAAATGTTTCTTTGTT
CTGTGTACCACCTAACAAAGTAGTAAACGGCTACATTTTGTTTGACATCCGCAGGTTTCC
ACGCACATCCGTATTTTCTCAAGCCAAGTATGTACGTATGTATGTTGGTTAATTAATTGA
GTTGTTGCAGTAAACAAGTAGCGCCTTGGCTCGTCAGGTTGTACATACAGAAATCGACCC
AACCCTGGCAACCTCGTAAAAAATAGCAAGCGGTGCGTCCATTTACAAGCGATTGGCAGA
GCAGGGTGGGTTGTGCTGTCCCCCATTCAGGTCCTAAGCAGATGCAAAACCACTATAACA
GAGTTGGCGATACACGACCACCCCAGCCCGCGACGAGGTAGCGATGGCCATCTGCCGCCA
GCAATCCTACCGCACCGAGGTCGACGAGGCCAGACGCCCCGATCTGGACGGAGTTCAGGG
CTCCAGTGGCGACGAACCCTAGCTAGCACCCTTTCCCCCACCCTGAGTTCCAAATCTCTA
ACCAGACGGGCGATTCGAACAGCAGGGGCACAGAATTGGAATCGGAATCGGAGCGCGGGG
CGGACCGGCGATTGAACTGGATTTGTACCTGGGCTTGAGGGAGGTGTGGGCGGCGAGGTC
GCGGGAGGAGTACTTCCCGGAGGGCCCGAAGATGCGCGTGCCGCCCT