morexGenes - Barley RNA-seq Database

Contig contig_1573591

Source Contig contig_1573591

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1573591 (2814 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1573591

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16517	1	1062 bp	AK354003	Available	Available	None

CDS Structure of MLOC_16517

Contig Sequence (2814 bp)

>contig_1573591 2814 assembly3_WGSMorex_rbca.fasta
AGGATGTCGAGCGTGCCTTTTGTGTTCTGCAATCTCGATGGGGCATAGTTCGGTATCCTG
CTAGAACTTGGAGCACCAAGAAGTTGTGAGAAGTGGTGACTGCTTGTGTGATCATGCACA
ATATGATCGTAAAGGATGAGTGCCCAGAACGTCTCCACGATCAAGGTTTTAAGTTTCAGA
GAGACAATGTGGTGCCTCAGCATGGCGGATAAGCGGCATCGTTTGCACAGTTCATCCAAT
TTCATCATGAAATGCATGATTTGGAAACTCATATTGAGTTCAAGAATATTTGGTTGAGCA
TATGTGGGGTCATGTTGGCAATCAATAGGTGTATTTTTTAGACAATTTAGTTTTTATTAG
GATTGTAAAATTTTGCTATATTTTATTTTCGACTGTGAAACTATTCTATATCATTTGATT
TTGAAAAATATGCAAAATATTTGTACTTTTCAAAAATCGACGGTTCGCTGATCATGCGGA
CAAATATGAATCGACGTGTTGAACGCGCTGTCAATCTAGATCATAAACCGAACGGACACA
AAGCCAGCGAACGATCCAAACAGACGTAAAGCGATTAAAATCATCATCCGTTTGGTCGAC
TGGTTGGAGTTGCTCTTAAAAGCTCTCACTTCATTCAAACGCCTACGTTTTAGTCCCATG
TCAAGCCAGTCCCGTCACTTGGCAGGCACGTGAAAATCGGCCCGTTTGGCTATGCCTCTG
TATCTTCGTGAGCCTGACCGGCACAGCGCCAACAAAGAAAGAAGAGAAAGGCAGAAAGCT
CAACACTTTCCCTTCCTCGACTCAAACTCCATTCCCATCCACCTCACCTCGCGGCTGAAA
TCACCCCATCTACCCCGACCGATCCCTGGCCTGGTAAATCTCCCGGTCATCCGAGCCCAT
GGTTCCTCCGCGGACTATTCTGATGTTCCCGGCGTCGGATTTGGTGCAGGGGAGGGGAAG
GAATGCCGACCAAGAGGAGCGTGGGCACCCTGGGCGACAAGGACCTCGGCGGGAAGAAGG
TGCTCCTCCGCGCCGACCTGAACGTGCCGCTGGACGACGGCCAGAGGATCGCCGACGACA
ACCGCATCCGCGCCTCCGTGCCCACCATCAAGTTCCTCATGGGGAAGGGCGCCAAGGTCG
TCCTCGCCAGCCATCTGGTGAGCAAAAGCAGAGCACGCCTGTCACCTAGTATTTTAGTGT
TAAATTGCTTATATATACTTATTGATGTGTTACTTACTACTTCCTCTGTAAACTAATATA
AAAGCATTTAGATTACTAAACTAGTATTCTAAATGCTTTTATATTAGTTTACGGAGGGAG
TACTTAATTTGTTTTACTCCTAACAATGATGTGTTACTTACTACTTATTGATCCATGAAT
GAGAATATGAGATGGCACAGAGCTGTATACTGAGAAATGCTCAGAGCTCAGCCTCATGCC
ACTTAACTGTTTATTTTTGTGGCATTTTCTGAATTTTATTTTTTTAACACTTAAACCAAC
AAGGAACTGCATATATTTTTTTTCAGAACAAAAAAGCTCATCAAAAACTAACTTTTTTTG
TACGTACTAACGCTATTGGCTTTACAGGGCCGTCCAAAAGGTGTCACCCCGAAGTACAGC
TTGAAGCCTCTTGTTCCACGCCTGTCTGAGCTTCTTGGGGTTGATGTACGTCATAAGTGT
TAAGAGTATTAAAACTCATGCTTATTTTTTACTTTAATCTAAAGCCCTAGCTGATCTTAT
ATTTTCTTGATTTGTTCATGTGCTCTAAAAAGGTTGTGATGGCCAATGACTGCATCGGTG
AGGAAGTAGAGAATTTAGCTGCTGCTTTACCAGATGGAGGTGTTTTACTTCTAGAAAATG
TTAGATTCTACAAGGAGGAAGAGAAGAATGACCCTGAGTTCGCCAAGAAACTAGCATCCG
TTGCTGATCTTTATGTAAACGATGCCTTTGGCACTGCACACAGAGCACATGCTTCAACAG
AGGGGGTTACCAAGTATTTGAGGCCTGCTGTCGCTGGCTTTCTTATGCAGAAGGTACTGC
CGAAGTTGCATTGGTCCATGAACTACTGAAAATGTTCCACTGCTACTATTTACAGTATCA
GTGCAACTGATTTCACTCTTGAGCTAAGTGTCCTAGATAATGCATGATTGCCTCACTGCA
GGAACTTGACTATCTTGTCGGGGCTGTTGCCGACCCGAAAAAGCCATTTGCTGCAATTGT
TGGTGGATCAAAAGTGTCGACCAAGATTGGGGTGATCGAGTCTCTTTTGGCGAAGGTTGA
CATCCTCATCCTTGGTGGCGGTATGATTTACACATTTTACAAGGCACAGGGTCATGCTGT
TGGAAAATCTCTAGTGGAGGATGACAAGCTTGAACTGGCAAACTCGCTTATTGAGAAGGC
CAAGTCGAAGGGAGTCTCTCTTTTGCTTCCCACTGATATTGTAGTAGCAAATAATTTTGC
TGCAGATGCCGAGAGCAAGGTATGATCATTCAATAGTAGTGGTTGTGCATTAGATTTTAT
ATTCATTGCAAGCATTATTATACCGAAAAAGGCCTTAGTCCCGTTTTATTTATAAAGCAA
GCAACCACACAACCATTTCATACAAGTCAGGTAGAATAAATGAAAGAAAATACTAGTGTT
GGGGGCACCAGCTGATGCAAGTACTATTTGTGTTGAGTAAATAAGCAATTTTCCGAGTAT
ATTAATCCACGAGATAATAACTANNATGGCATTGACTAGACTAATGATGTACTGTTCTTG
AGCTAGCCTAGCACATACTACGCATATAGTGGATACATCTATGCAGACAAGTAG