Contig Data
morexGenes
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Map Locations of contig_1573546 (3356 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1573546

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16500 1 534 bp AK366560 Available Available None





CDS Structure of MLOC_16500






Contig Sequence (3356 bp)

>contig_1573546 3356 assembly3_WGSMorex_rbca.fasta
TTGGCTTCGAGATCTTATGGGTTTCAACTCNNNNNNNNNNNNNNNTGTTTGGGACTGAAA
GGCTTGGTTGCTGTTGTTGTTGTTGTTGGACAGTATCATTCGAAGCAGCAGATTCACACT
TGTCATTTGGAGCAATAGGTTTGTGCTTTAGTAAATACTCCGTACATGGAATGATGGAAT
GAGTAAGGACTAAGGAGTATCGCAACACGACAATGCATTCTTAAATGGAAAAACAGAAGT
AAGGCTCTGTTTTGAAGGGCGCTCCAACTCCATAATCCTTCGGTGGAACAGGTGCAGGCT
TTTCCCAAACACATCAGCTCTATTTAGTGAAGTGGAGCCAGCCCTAGTACATTTCCATGG
AGCTGAGAAATATTTGGAGGATTGGGTTCCTACAGGAAATATTCCTTTGATACTGTTTGG
AAGAAAGGAACTGCCATCCTACACAGTTCCTATGAAAATTCCTTATGAATTTTGGAGAAA
ACCAAACATGAGGTCATACCACATGTTTCGTCTCTTTGTGTCTACAATTCCTGTGTATTT
CCGGCATAACATCTAAATGACAGTTTTTGGGTTTTCCAGCGGTTTTCTAGTATAATATCT
TAATTCCTGTGGTCATCAGAGCTAATACATACAATTATACAAATTACCACATAAAAATGT
CAATTACCAAAAGGGACATATGAAATGTAAGCCAAAGCTAATGTCACATAAATAGTGGCT
CCACACATGTTAAAAGAACTGCACCTTCTTTCCAGCTACAGGCAAAAGTAGAGCTGGCCA
AAGATATTCTGCTATAGAAAGCAAATTTTGTATCTGGGTATCAGCTTCAAAGCAACAATT
ACGGATGGTGCCAGCAACCTGCAAATATTTACAACAAGAATTACACAGGAACAGAACACA
ATCATTGTTTGGCATATGAATATAGTTCAAGATGAGATAAGCAGATCTAGATATATTGCA
AAGAACCTGAAAACACGGAAGTCCAACATAATCAATAGATATACTGGGATATGTACTAAA
ATGGAAAATGCATGAACAAACATCATGAAGAGTTATAAAACAATGTGATTTTCATTTACA
AACTGAACAGCCATCACTACATGGTACCGCTGCGCACGTGGTTAAATGCATTAATATTCT
GCCTTGGGGAAATGGTTCTGTACTGCCACTGCTCATATACCACATAGATGAATCGGCTAT
ACCTCTTTATCATTTTTAATATACTTCATTAATAATAACTAGATACCCCAAAGTAAGATT
CATGAAAAAATCTGTTTGAGACCATATATTTCATGCTATTTGCACATAAACAGCCTTTTT
GTACATAAAAAGTTATATTGCATAAACGAAAGGCTTTGATGATATTTTTGGTAGAACTCA
TATTTTGGTATCTTATAATAATTAATAAGCTATATTGAGAATGATAATGAGGTATAATAG
GTTTCTGTATTGATGTATATTGAATGCAGGAGTACATACTCCCAGGAAGTTAGTCCTATA
AACATAGGCTGTCTATATTGTCGTACTAACACCAGCATCAACGTCAAGATTCGAAATAAG
CTGTACATACCCCTTTCTTTCTAAGTTGGTTTGTTGAATCAAATTGCCCTATAATCTGCT
TTAGAAGACCTCTCTTAGGTTCCATCAGTATTCTCCGTCCAGCTTCGACCTTTGAGATAT
TCACAAGTATCGAGGCGATGTATTCAAATATATCTTCATCTGCATACCAAAGGAAAAATT
AAAACAATTTATGAGGTGAATATGATAAGGACTCCCCAGCCAAGCAAAAGAATAGAAAAG
GAATCAGGAACATAGAAAATGGAACAATTAGGAAAAAAAATAGATGTCTACTTGACATTA
AAAAGGGTATCCAATAACATATTAAAAGACCAGATTGTTAGGAAGACCCGTCCATTCCAT
CTAAATGGCACAAGACACAACCACTGCACCTTTATATGGATGGCTGATTGGTAGTAGAAA
GATTGCATTGCTATAATTTGACCGAGACAAGACTGCATTAGTTATTACATATTATTGTTA
TGGGCTAACATCACTGGTATTAAAAGAGGAACTGTATTATAAGAAGGCAAAACAGTAACA
AATAAGTGTGTTCCCCTCATGTGAGTCTTTCCCCCACAATTGGTTCATCTCAACCTATTC
CAGTACCCTGTCCCCTTGAAGCTGAGCCATGTCAGTCATATTCTGTACATTATCTTTACT
CCTATAAACATAGTAATTGGTGGCAGCGGTTCATTCACCTTTCATCTCTCTTTTTATATG
TGGGAGTGAGACCATCTCAACATATTGGCAAACCATATATGCCCATGCAGAGACTCCAGT
CCTCATCCAACGACTGTAAACTAAAATTTCAAATGCACCCATGGTGTTCCTCCCTTGGGA
AAAAACTCCCAGTTCTACCCAAGGTGAAGCCATTCTCGGGTCCCTTGGAGGCCTCCCTGG
TTTCTTCACAAATGACCAAGGATAAACCATGGTAGTAGTGGTAGGCAGGAAGCGTACAAC
GGTAAATTTTGGTCCACTAGTCCATGCCGGTGGAAGAAGTGGGGGGTATATCCCTCAACC
TAATGGGCTTATCTTGGGTCATTATTCTTTATTTTGCCTTTAAGCTTCTTTAGCTTCTTT
GACTTGTTGAACATGACTAGTTGTTTGGACTTCCATTGACTTGAGTTTGACAATTTGCCA
CGTAGACACCATGTAGATCGAGGCGGGATCCAGGTAGAATTAGCTATTCGCACAACAGTT
GTGATACAGATTTTGCCACAATTTTAGCAGATCCATGTCCCAAACTCTGCAAACTAGACG
TCTAATTTGCAGGATTTGACTGATGAACAATAGTAAGGTAAAGCGCAATCGTTAAAACTC
ACAACAGGAACAACACGAACACGGCCAACGAAAATAGGAAACCTAAAGAATAGAGCACAT
TCACCTTCAGAGTCACAGGACGACCTACAGAAGGAGCGCACAAGCTTCGCAACATACAAC
CCTTGCACCTTCTCATCACCAACCTTTCAGAAAGGAAGAGAGCTATTCTCAGTAATTGTC
TGATTGAACTGTATTCATTTCGAACCTGGAGGAGACGAGAGGCAGGCGGTTGAGCTTGAA
CCTGGAGGAGGGCCGAGATGCCGGACTCGACCTGGGTGAGGTTGACGAGCAGCATGACGA
GGCTGCGCGCGAGCTTGGGCTGCTCGCCGCCGCGCTTGACCATCACGTCCATGGCGGCCG
CGACGGCGCCGAGCGCCACGAGGCGCGCGGCGAGCTCGGCGTCCTGGCTGAGGTTGACGA
GCGAGTCGGCCGCCGCCCCGCCCGCGCCGCCCGCCCCCCCCGCCGCGCGCCGCAAC