| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_1573545
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_1658 |
3 |
2365 bp |
MLOC_1658.2 |
Available |
Available |
LOC_Os01g60910.1, FRAME:+3, EVALUE:0.0, 13101.m06484 protein CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| MLOC_16499 |
2 |
2125 bp |
MLOC_16499.1 |
Available |
Available |
LOC_Os01g56810.1, FRAME:-1, EVALUE:0.0, 13101.m06024 protein cytokinin dehydrogenase precursor, putative, expressed |
| MLOC_16646 |
2 |
1326 bp |
MLOC_16646.2 |
Available |
Available |
LOC_Os01g28030.1, FRAME:-1, EVALUE:9e-164, 13101.m02910 protein peroxidase precursor, putative, expressed |
CDS Structure of MLOC_1658
CDS Structure of MLOC_16499
CDS Structure of MLOC_16646
Contig Sequence (8411 bp)
>contig_1573545 8411 assembly3_WGSMorex_rbca.fasta
GTGACGGGGACCACCCAAAACGAGCTAGACGGACAGCGAGGCGTAAGACCTTCGTATAGC
ATCCATTATAGTAAGTTATCCCCCCCCCCCCCCGCCGCCGCCGTCGCCGCTCCCGCCATG
CCACCAAAGAAGTACATTGTCCCTCGCCCCGCCACCACTGTCGATTCCACCCAGCCGAAG
CAGAGGAAGCCGAGGGCACCGATGGCTAGGCCGTGGTCATTTCAGACGCCAGTGGAGGGT
GGATGTCCAACGTCGGCACGCGGTCACAATTACGACGGAGAAGGCTTGACACCAAGAACG
CCAGGGACATGGCGGCTAGGGACGTGGCGGCAGCGGCGGTGGTCGATCATGGAGAGGCGT
CTCGGGAGGAATGGTGAATCCACCCGGACGCAAACCGCAAGCCGCATGGAGCCACCAACA
GCACATCGCGTCGCCGGCCAACCTCTCGTCGTCGATGCCTCCCTTGGGGTACGCACCCTC
GCCTGGCTACTCCGACGATGACGCACATGGTGGTTTCAACCCCAACACCACATTCTCGCA
TGGCGCGCCACAACATTCCTCCCGCACTGGCTTCAGTCATGACCCGCGCACTCCCTCTAC
CCCATGTTCAACACCGGACTCACACCCAATACAACTACTCGTCGTTGGCGTACTCGTCAG
CCTCACCTGCGTCGCCTCTGCGTCGTGGTACCCTTCCATTTGTGCTTGGTTCGACGCTAT
AGTTTAACCACATCGATGCCGACATGGACGAGATCATCACAAGCGGCCCGTCGCCGCCGC
GTCTTGCCCGTGGTTCGGCGTGCAGGATAAAACAATGGACACCGTCGGCGACATTGATGA
CGAGCTCGACGACGCCGAGGAGGAGGGGGGAGGAAGAGCAAGCGGAGGTGGAACCCGAAC
CTGCGCCGAAGAGGGGGGATAAGAAGCGGGCTTCGAACGCCAAGCCAGCCGAACCCCGTG
TCAAGTGGATGTCCAAGGAAGTCGAGTGCCTTGTAGAAGCATGGAAGAGCGTCAGCATCG
ACCCGGTCAGTAGCGCGAATTAGAACACCGACATGTACTGGGGAAGAATCAAGGCAGCAT
TCGACGAACCCAAGCTGGTTGGCACCGACTTTGCCAACATCCACATGGACCTCGGCGACA
AGGCCCTCGCGAACCACTGGGCAATGGTCCAGACGGTCTGCAACAAGTGGCATGGGATCG
TCGCGGAGGTCGCTGCTCGCACAGAAAGCGACGCCAACGTCAAGGGCCAGGTATGGACGT
AGTTTGTTGTCCCCAGTTTGTCGCGTCGTTGTGCGCTTTGCCAATACGTTTTGTCCGGAC
TGTGCAAATGGTTCACATGTTCGGCATGTATCGCCAAGACAAGAGCGACCAAAAGTTGAA
GTTACTTCACGTGTTCTCCAGGATCGAGTCGTGCGAGAACTGGAGGAAAGTTCGGCTTGC
TTTCACCAAGGCTAAGGACACCTACAATCTGAACGCGCCTACCCCGGTTACGGCAGAAGG
GCGCCCCGATGACATCAAAAAAGCGAAGGCGGAGAGGGACGCGGAGCCCGTTGCCGAATG
GCTGCAATCTTCGATCGAGCAATGCATCGCCGACGCCAAGAGCAATGCTGCCAAGATGGA
GGAGAAATCCGACGCGCGGTGGTCAGCGTTGATGACGAACCAGCACGTCAAACTCAACCT
TCTTAGGACCAACGTCGTCGCAAAGAAGAGGAACACCGACCTGACGTTCTTGAGGGGGTA
GACATGTCGACGACGGACGAGCAGGTGAAGACGTGATATCTCGTGGGGCGCGGCCTCATC
TTAAACCAGATGCCCGCACCGGCGGCGACCACGACGGCAACATCAACGATGGCGTCCAGC
CCGAGAACAGAAACCACGCCGACGATGAGCCTGACTACGCCAACGACGAGCCCGACCCCG
GCCAATCCAGCGGTAGAGGAGCCGCACTACGCCGAGCCGGTCGTCTAATTCGTTTCATGT
CTACTATCCCTTCCTTTTGATCGTCGAACTATTAGGTGTGCTTGATCATCGAACTATGGC
ATGTTGATCGTCGACTTGATGCATGCCGATCACTTAACTCATGACGTCTTTTTAACAGCG
GGGAAGACAAATTTAAAATAGTAAAAGTTTGGGGGCCGAAGCGGCTAGAAACTCGCTCGC
CCCCAGAACGAAAAAAGCGTCGACGCGACACCAAAAGGCACTCACCGAATGAGTTGGAGG
GCCAAACGACTAGAGTTGCTCTAAGGCGCTGTCAATCCATGGTCACCATGGCTTACATGG
TAGAATTAGGTACGCGAATTTGGTTCCTGTAGGGTACCCTCTGACCCTCTTAGTTCAATT
AAATGCAGTACTTTCTAGGTTACCCTCAAGGTTTCAAATTTGGATCCCTACGTAGGATCA
AGAACAACGAAGTGAGAGAAACTGAGGTGAAAAACTGTTTTTTTACCAGCACAACACAGC
ACAAAAGATGTGACTACATAGTTGCATGGACGCGACGCATTCCTCTGTACATCACCAACC
GATTCAGAGTTAAGCTGACAATGCGCGCCACATACATGACACCAACGGACATCTTCTATA
CACCTCCATGCACACTACCTAATCCTGCTGCTCTCTGTGATGGCCAGTTACATACATACA
TACACCTAAGCTAGCTTCCTGAATGTCATGTTAAGCGGTCCTGCCATTCATTCTCAAGAA
TCGGACAGGAGCGGCGGCGGCGGGAAGATGCCCTGCCCGGTGGCCAGCATGGCCCTCGGG
TCAAACTGGGCTTTGAGGCCCGCGAACCGCGCCCAGCGCTTCTCCCCGAAATGGGCCGCC
CAGTCGGGCTGCGACTTGTGGTTGGGCAGGTACTGCTTGGCCCCGATCCCGGCGTCGTCG
CAGAAGTCGAGGATCTGCCGGTTCTGCCGCGCCAGCGCCTCGAGGCTCTCCGGCGCGCCC
GGCAGCGCCGACCGCAGGAACGCCACCAGGTAGAACACCTCCTCGTCGGGCGTCACCACC
GAGCTCCTGGGGTCCCACCTGCACCACAAACCACAAAGCCAAACCTCTCATCAGAATGTT
TTTTACGAGCAGCCGGCAGATCATCAAATCGGCTCCAAAGATTGGAGCAGGCTAGGGAAA
GCAAGCAACAGCTTCAGTTAAAAGAGCTCGTGTAGATGATGTGTAGTGTAGTGTAGCTGC
GGCTGATTCCGGTGCGTCCTTTTGTGCTAAGCAAGCATGGGAAAGCGACAACGCATCTGG
CCACTACCCACACAGAAAGGGTGAATCCTGACTGTGCCGTTGCCGTGGTGCCGCGGAAAG
CCGCGGCGACGGCCGGCTTAGAATAACTGGTCGGCGCGGGCCGGGGAACTGGTGTCCGGT
TAACCGCGATCGAGCACGGCGCCACTTGGGAGGTTTTAAAAATTCACAACGGACCCTGTC
ACCCCAGTGCGCGATATGTCCGCGGCCATTCACGGTCACCGGATCCCGGGCGAAGGTGAC
GGCAATCCGGAGACTAATTAGGCGGCAGCGACATTGCCAATATACTAGTGGCGGTCACCA
ATCATGGTGACGCTCAATGAGTGGCCACCACCTGCGCAGTGTTGTGTCGCATGTGAGGCC
GATGATCGGCTTCCAAGGGCGGCGCCCGCCCCTGAGACGGATCGTGTGCGTGCGCGTGCG
CGTGGCATGTGCGGTTTGGCGGGCGGAGGGTGGATCATCAACAACTGGAGGCGCCCTGCA
TCTGCCGGGGCGGTGATGTGGGCGCCGGCCGTGCGTCCGGCTGGTCAACTGGAGCACCCA
GAAACAGCTAGACGGACAGACAGGACAGACGATGCATAGGCATAGCTATAGGTTGACTTG
GGCAGCAATCTGAAGATTATGAGTGGGTAGCTGGCTTACTTGTGCTTGTTCATGGGGTAG
ATGAGGATGGGCCCGCCGGAGGTGCGGCTGCCGAGGATGCCGCGGAAGACGCCGCGGTCA
AAGTCGGCGATGCGCGACGCCGGCACGAACAGGTTCAGCCACGGGTGCGGCACCTCCCAC
ATGCCCTTGCCGCGCAGCTTCAGCTCCGCCGTGTGCACGCGGTCAAGGAAGTCCACGTAC
GGCAGGTCCGTCGTGAACACCGTGCCCGGGAGGAAGTTCAGGTCGCCCAGCAGCGCGTCA
ACCTCCTGCAACACATGATTTTTACTAGCACGATTTAGACTTGTTGGCGGTTTTCTGCTC
TCTCTTTTTTTTTCTTGGAGCAAAGGCTTGGCAATTCAATTAGTGCACTACACATAGTAC
TTACATAATTAAATCAAGTTAAGTAGTCGATATAAATAGTGGTCGGGCTCGCTAACGGAA
TTGAGATCTAGTTATACGTATGGGAAGATCGATCTACATATATATATCATCGGGTGTGCT
CTGCATGTGGGTGCCATCATCATCATATACTAATCAGCATTTTTATACTAGTGCTACGCT
ACCAACTCCAAAATGCGAATTAACATATCCCAATGATTGGCTAGCCAGGGGCCCCGATCA
GAAGCAGCGCATAACGCTAAACCAGCAGGAATTAGTTAAGAAATCCTACTACCGTCATAA
ACAAATGGGACGGCCAGGAGAGAATGCAGTACTACTAGAGAGGCGGCGCCGGCCGACGGA
CGGACCTGATCAACGGTCCCGGCGGTTGAGTCGTGGTCGTAGTTCTTGGTGACCTCGAGG
CAGTAGAGCACGCCGGTGTGGTGCTTGAGCGAGCTGAGCTTCACCGGGTTCTGCGGCGAG
AAGAAGGAGGACCTCCAGTTGTTGATGAGGCCCTCGGCGGCCACCACGAAGCCCTCCACG
TAGTCGAACCGGCGGCCGTGCTGCGACTGCGAGATGAGCCGCTCCTGGTCCGCCGTGAAC
TCGGTGAAGTTGGAGTAGAGCGCCCGGATCCAGCGAACCTGTACGTACCACCGTGCGCAT
GCATGGTTAGAAAATTGATCAGCTTAGATCACACAGTTTGGTTTTATTATCATGGATTAG
TCAGCAGGTTAAGCTGCGGGGGAAGAAGAGAAGAGGATCTTGCGAAAGATCGTGTGAGCT
AAACAAAAACACGTAGGAGAAGACCCACCAAATTGGTCAGCAGGGCAAGTTGGTCGATCG
ACCGATGGATGCCAACCAACCTGGGCGGCTGGACCACCTGATCGACCAGACGCACAGCCT
AGTATTTTAATTTGGACCAAGACTTTTTCCTGGTGGACTTTTTCTCCTTAACGCTAATAA
GTAATAACACAACCAAAAGACTGCTGAGTGCTGGTACAAAAACTGTTTGTTGACGCGAAA
GCATTTGATTAGCGTACGTGTCATCCGCTGAAAGAAATAGCATACGTGTCATCTCATCCG
CTGAAAGAAAGAAATCAGCATACGTGTCGTACAGAGAAGAGCGGCCCGGGATCTTTCGTG
AAGAAAAGAAGAAGGAGAAAAATAGTGACTCGGAATCGACGGATCGGGCGGCTATAATTA
GCAAGCACGTTCGGTTGGGCCTCTTATCGGTATCTTTATCGGTTGGTTGATTATTAACGT
ACGTGCGGTAATTCCGTCTGTACCTAACAATGGAAGAAATGGATGTCGCGCGCCCGGCGC
GCTTGCCACTTGCACGGCTGGCCTTGAGCTCCTCCGCCTTGTCACGCGGGAGCGAGGTCC
AAAGGGAGATAAGGCGCACGAGATATTCCTTCGTCTTGCAGGAGAGACCACCGCCGCGGC
AGGTGACCGGGTTAACGGACCAACGGATTAAACAAAGAACGGCGAGCAGGAGTGTGACGG
ACGGGCATAAAGAAAGAACTGATGCGTGCGTATGGACCGGGGAGGTGAGGGCGATGGATG
CATAGAGCGCCGGCATGGGTGGTGGCGGTGGTGGTGCTACCTTGCGGGGAGCAGGCTCGA
GGGCGATGCGAGCGCGGGTGATGATCCCCAGCTGCCCCAGCCCGCCCAGCGCGCCGAAGA
AGAGCTCCGGGTTCTTCGCCTCCGAGCAGGTCACCGCCTCTCCCTTCCCTGCAAAGCAGA
TCAGTAGACACCGATGAGGATGAGAATGCCGTCCCGAGGTCGAGGATGAGAAGCGGTGGC
TGGTTATTGATTAACTCGTCTGATGTATGCATGTCGTACGTACCGGTTACGACGTCGAGC
TCGTAGACATTACTGATCTGGGGCCCGTGGTGGAACGCCTGCCCGCTGATGCCGGCGTTG
GAGAGGGTGCCGCCCACGGACAGGTAGAGGTAGTCGGTCCACGACCGCGGCGCCAGCCCG
CCGTGCGACAGCGTCCAGTTGAGCACGTCGATCCACAGCTCGCCGCCCCACACGTCCACG
TAGTGCCCGCCCAGCTCCGGCGAGTACACCGGCAATGCGCGCGCCTGCGGCTGCGACTTG
CCCCCGCGGCTCATGGCCACGACCACGCCGCCGGGCACCTGCGCCTGCCCGCTGATGGAA
TGCCCGTGGCCGCGCGCCGACACGCGGATGTCGCGGGCCGACCCGTACGCCGCCCGGACC
AGCGCCGCGACGTCGCCGGCCCCGCTCGGGTGGTACACCGCCAAGGGCTCGCCCCGGGTG
AACCCGCCGAAGTCGCGGGACGCCTCCAGGACGTCGGCCGGGTCGGTGCTGAGGCGGCCG
CTGCCCACGTCGCCGCCGAGCTGCAGCAGCTCCGCCGGCTCCAGCGGCAGGCCAACCGTC
GAGATGAGGCAGTATATCTGGAACACCATGAAAACCAAGCACCGCGCCATTGCCAGCCAC
ACTTTGTATGTATCCTCTGTCTCTAGCTAGCGGAGGATGGAGGGGAGGCGGGAGGAAGAA
GGAAGGAGAGAGAGAGAGAGAGAGGTGTCTGTGTGTGTGAGGCGTTGGGGTGTGAGGATG
GGGCGGTATTTATAGTGAGATGGGAGGAGCGAGAAAGGTGAGAAATGGAGGAGACCGAGG
AGGATAGGAGAGAGACTCCAACATGGCTTGCCGCGGGAACAGAGCACCACCGCTGGGGCC
GCCCAAGAATAAACTAGTAAAACTAATCCGGAGGCGCGTCACACGACTCATGCACTCGCC
GGCCGCCCGCCCGCCCGCCTCTTAATTTCCCTGTCAGAATTAGTGGATCGTGTGGCCGCC
CAAAGATTCATCGAATTTCAGCTCCTCAGCTGGCCATTTGCGGCACAAACTCAGCTCTCC
TCTCCTCTCCTCTCCTCTACTACGTACTGCCGCCCTACTCAATGAATGCGGAGACCTCTC
TGGTCTCTGCTCCTCGCTGGCTTTGTTGATCCAAATTCTACTGCCACGGGGAAAAGTGGC
CCGGATTTCATCCTGCGTGCGTGCCATGTGCGCGGTGAGCTTTGGAGTGGAATTCTTAAA
AGCAGCAGCTACTACTACTAGCACCGCGTAGCTGGAAGAAGCAGGGCCAATCTGTGGAAG
CTTTGGGGGTGCAGATGGAGGGAGGAGAGGATCAACACCGAACCAAAAGAAAGACGATCC
CCTTCCTTCCGTATCTTGGCCGACTTTTGAGGGTGCACTCTCAATCTCATCGATCGCCGC
TCGACGCATATGCATGCAGCACAGCAGATGGCGAGAATCTACACCAGCACCATTCCAAAT
TCCCAATCAACACTACACCCCGCCTAAAGTACACCACACCAGCTTTCTGATCCGGCATTT
ACCAAAGTACGTGCTGCCCAAATCTTCAGATATTAAAACGCGCGCGGGAAAGCGTGCTCG
TGGTGCTGTGGCGAACAGATGTCCTCTAGATATCGGTGCCAGTGTTGGCTGTGAGATCAA
AGGCGTATATGCACACCTCGGGTACGGTACTACTGTTCTTCCACGCTGGGTTTGCCTTTG
GGTCCGCTGCGTAGGCTGCCTAGCCAGCTAGGCAGTAGTGCCCTACGGCAGAAAAATAAA
ACGAAAATGGTTAAAGCGTCGACGCGCGCTCTCCCACGTGACTGATTGCGCAGGATCGCG
CGAAGATACGCTGATTTCCTTTTGCTTTCTGCTCCGTATCCGCCACGAAATTCGGCGGCC
ATGGGTTTCCCAGAGCGCGAGGACAGGTTTTCGTCGCTTTTGGATCGAGGCGAGGAGCAA
AACGCCGTGGTAGTCTAGTCCCGCCGTCCTATTCATACTAGCCCCCAGTCCGTGGAACGT
CGACGACCCACGAGGACATGCGTAAGGCCAACTCCAACCCAGGACCCTTTTTTTTCTAAA
CGAAGGTAAAAGATTTACCTCATTCATTAAGTAAATAGCGAATAGAGTTTTACAGCTGGC
TATAAGCATTTTCATTCATTAATAGTATAGCCAACTGCTGGCTATAAGCAGTCTTATAGC
CCACCTTATAGCTAGCTTGTACAATAGTTAGCTATAAAAAGTACTACTTTTATCATATAT
GGCCCACGTTTCATTCTCACAAAGCANNNNNNAGCACGTGCTAGAGCTGGCTCTTCATGA
AGAGCCCGCTT
