morexGenes - Barley RNA-seq Database

Contig contig_1573527
Source Contig contig_1573527
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1573527 (6715 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1573527

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16489	2	1558 bp	MLOC_16489.1	Available	Available	LOC_Os08g34170.1, FRAME:-3, EVALUE:6e-155, 13108.m03574 protein CAF1 family ribonuclease containing protein, putative, expressed
CDS Structure of MLOC_16489

Contig Sequence (6715 bp)

>contig_1573527 6715 assembly3_WGSMorex_rbca.fasta
CCTCTTCGGTAACATGGCCAATGACAACGCCAACAAAAACCCTACTGTTGCTGCAACTCA
GTACGTGCTTGTGTTCTTTTTCTTTGAGTTCCTGCCGCAGTTTCTTGCTCTAGTTTCTCT
TCTAGATATATTCTGTTTCTGCTCATCCTTTCATATGATGTTTTATGTACCTAGAATGGC
TCTATATATGTTCTCTTTTAGATGATATGTGCACATGTCTTTTGTCGTCTCATCTCTATA
TTGCCTGCCTTGTTTCGTCTATTTTATGATAGTTATGTTTTCCCTATATTTTCTGTTAAT
AAAATCCTATGGTAAATTGCTTATATTTCCAACAGATGATGCCTAAGAAACAATAAATGA
AGCAAACTGAACACAATATAGAAGCACAAGTGTGAAGCACTTAAAGTAACCATATGAAAT
GAAGAAGCATAACTATGGTGCGTATGAAGCAAGTTGTGCACCATAAAGAAGAAAAACTAT
GATACAAATGAATCACGAAAATTGGATGCATCATATTTATGTAATCTCAACATGTTTTTT
GTATAGTGGAAGCATGTTTTAAAATGAGGTTAAAAAGATTTGTGTAGTCATTCAAATTAA
GACAAGGAAGGGGGTGACATGCATCTTGCCGACTCGTTGTAGAAACATTGACATGGTAAA
CATTAAGCAAACTGTACGGACTGGTGATGCATAAGTAATATATGTACAAAGAATGGTACA
GATGCAGTCTCGACACACTTTCTTGGTGAGGAGAGTGGGGACCAAGAGGCTGAATGAGGA
TGGTATGGATGCCGATTCGTGCAACCGACCGTGTGCTCCTTTCATCTCCGAACATAGACA
TCAAAGAGGAAAAATGGAAGACCAAAATCCTCCCACCGATCCGCAACTCTCATAACCCTC
CTAGCATGAAGAACGAAAATGTGTCATGTCAATATGATTCATCTTAACTCGAAGCATCGA
GCATTGAAATGGAAATAAAAAAAACCTAGCAACATGGAGATACACATTTCTAGCACCTAC
TTCCCTAGTTCAACAAAAAAACTATATAGAACAAACTATCTAGATAGTAGAAGCATATGT
AGTATACTTTGGAATCTGTACAAAAAAGCATAAAAAATGCTATCGACCATTACTCATCTA
AGCTGGAAGCACACCATCTTAAAAATAGAAAATGTATAAGATTGGCACCAACATAGCAAG
TCTGGGCGATCTGAACACCAAATCCAAAATAGATTGATTGGTGATTTAGTGGTTTAATAC
ATGGATATAGAAATATCAAACCCAACATCAGCCAATATATACCATAATATTGTACACACA
AAGCATTAGGGGTCGATGCAACGTGCTACCTATGTTTAGGTGACTGCTGATTGGTCATAC
TAGCAAGGACAAGAAGAAAAATTGTAAAATAAGAAACGGGGAGTATGGATGAAATCCATA
CAAATCGAAGAAGTGCACGAAGTGTAATTCTGAAACACCATTTGCTGGAAGCATGAAAAT
ATGCTATTTCAGAACCATTCATCTTAATTGGAAGTGGGGAGTAAACCAAGATGTTAAAGG
TTATGTCAGCAAACAATATGTTAGAGGCCAACTACATTTGTAGAAATTAAAAGTTGAGAG
GACCCAAAACTTTGGTACTGGGACGACGAGGTTACTCGAGTCTATTCAACCGATGAGTAG
CCTGGCGAAGCACGATTCGGAGTTGAGGATAGGGGAACAACCCCATAGCACCGTAGTCCG
AGTGTCGCATCGGTGGAGAGGAAGAGGAGGCATCCATGCTGCTCAACGACAAGTAGAGGG
GGGACAGGGGCGGAGCTGGCCGGTGAGGTCACGGTGCAAGGGGCGCGGAGAAGGAGATCT
GGGCCAGGCTCGCCGGGGGCGAGGTGGAGGGAGGAGTTCTGGGCGAGGAATGCGATTAGG
GACCATAGAATCACTAGGGATTTTGGAGAGGATAGAATCACTAGGGATTTTGGAGAGGAT
TACGAACGGGATTTGTGGCTTGTAGGTGGTTATGCAGGTGGGATTGGATTTTGACCCAAT
CGACGATAGTTAAGTGGTCCGACATAGTTAAATGGTCCTACGCTCACGTTATAGATAGGA
AGGGTTCCCCGAATAGAAAAACAATACTCCCTCCGTCCTGATGTATAAGTCATTCGCGTA
GTTCTAAGTCGACAATTTAACTATCTAAATATGTATCATATGTGATAAAAAAAATTAGAA
ACTACATCCGTTTAGAGATCTAGTGATATATTTTTTATGACATATAATACATATTTAATT
ACTCAAATCAATGACCTAAAACTACGCGAATGACTTATACACCGAGACGGAGGAAGTACG
TTTAATTCCCGCAATCCAAGGAAGCCTTCAATGCCGACCAAACGATCTTATTTTGTCACC
TGTGAAGAGAAACACTGTAGGTTTGATATCAATGGAGTGGTTCCCAGTATGGGGCAAAAC
CAAAGCAGAGCGCTGAATCAAGCTCCGCATTTACAGAAATGGTATTTTTGATCAGTTAGC
GAAATAAAGCAAGAAACTGGTATCACAGAACACATGTTTTGCACCTAAAAGGTTGCTAAA
ATAAACAATCTACATTACTCTCAAGTCCCACTAATTAAGGGGAGCCAGTCAAGTAATGTT
TATCTTGCAGGACATCCATTTCAATGACTGATAAGAGGTGATAGGGCTGTGCAAGCAATG
ATATGATCGAACACAGAACATGCAGAAACATGTTTCGACATACTTAATAGTCTAGACTGA
CAAAATATTAGTCAACTGCACTACTTTGAGCTGCAATATGAAAATCGCTCATTCTGAATA
ATGAAAATCAAGACAAACAATGAAGAGTAGGCGTGGCAGCAAAACTAAGAGCAGATAGTT
GACACCTCTGAGATCTAGTGACTGTGAATAGTATGATGACTTGCCCCCTCTCACACTCCC
AAATGCACAACAGTTCATTTTTCAGTTGTACACATCAAGGTATGTCCTATTGGGCAAACC
TTGATAGATGTCCCATACAGCTCAAAGGTAAAGACCGAGCATTCAACAGAACTACCAGGA
TATAAGCAACGAGAGTCATATAACTGGGAACAATGGCTATATTATGCCAACCACAAGCAA
ATATTCAGATCAGAGAGCATATATTCAACAGAAATATTTCCTTTTTTTCAACCATAACAT
TGTCTTATTTGACTATCCATTACTCATTCGATGAGCAGAACTGCTGGTGGTCTGTTCTCC
CCACCATCAGAAATAAGACCATACAACACACCGGCATAATTCTCGGTCGATCCTCTGAAA
TACACCTCCTTCAGCTTTTTGAAGCACTGCAAGGTCAGCAGTGAGTCTGACCCAGCCTGG
TGGCAGATCCCCACACGTTGGACACCAAGTAGCTCACCAAGCTTGCTCAAGCCACCATGG
AGGCTGCCGCAGTACTTCATGAGATGCTTGATGTCGTACAGTACCGGGAAGTAGATTCTG
ATGAGGTCAAAGAATCCAGGCATGGTGTCAGGTAGGTTCCGCCCGGTTAGCAGCTTGAGC
AGGTATCCGAAGTCATACCCGCTGTGAAATGTGACCCACTGGACCTCAGCGTTGAGCAGG
ACGCCGGACGACATGAGCAGCTCGGCGAAGTGGCCCGTGTCAGCACCCTCGGTGGTGAAG
CGGTCGAAGTCGATCCCACTGTTGCGTAGCAGGTCGATGGAGTCGGCGTTGGCGGGGTCT
GAGCGCGGATCGAAGCCCCGAAAGTTGAACTGCCAGGCGCAGGGGCGCCCCCCCGTGCCC
CTGGCAGGGAGTGCGCCGTTCTCGTCGGAGAGAGTGAGACCAAGCTGGATGAGGCTCAGC
ATGTCGACGTTGGCCTTGAGGGTGGCGTAGTTGTACTCGTCATTGGAGCGAAAGCTCCCG
AGCGGGCGGCACACGATGCCCGGGAACTCGGTGTCCATAGCGATGTACGAGTAATCGTCG
ACGACGTCACGGATCACGGCGAACTCCGCCTCGAGGTTCGTCGCCCATACCTCGCGGATC
TCTACGCCCTCCTCGTCGACGGGCTTAGCATCATCATCGGACGAGGCGGGGGGCGGTGGG
GCAGACATCGGAGCTGGTGCATCCATAGATTCGGAGAGAGATCTTGTTGGAGGAGTGAAG
CGGGCTTGCTAGGGTTAGGGTTTGCGAAACAGTCCGGCAGATCGGCGTGGTGGGGAAAGT
AATAACAGGAGGACAGGGAGGCGGGAGCAGGGGGCCACAGGTCAGCGCAGGCGGCGAGTG
GAGAGGGAGGCTATGGGAGGAGAGGAGCGTGGAAGATAAGAAGGGCGCAGATCCAAGGGG
AGGCCGTGGGTAGGGAAGAAGGGAGAGGAAAGTGGAATGCCCCCTTAAGTTGGTGGGTAT
AAAATACTCCCTCCCTTTCTAAATATAAGACCTTTTAAAGATTGTATTACAAACTAAATA
CGAATGTACATAGACATATTTTATAGTATAGATTCACTCATTTTGGTCCGTATGTAGTCT
TCTAATGAAATACCTAAAATGTCTTATATTTTGGAATGAAGGGAGTAGAAAATTACACAA
CAAACACTACAATACACTAGCCGTCAACCCGTGCGACGGCATGGGCTAGTACTATATCAA
AATTTGTAGTATCATCCTCAATTTATAATATAATTTTTGTCTTCCATTGTCCCTTATTAT
TTACTAAATAACCAATATCCCTTTGAGATGGTTATGACTGGTATTTATATCTTCTTTATG
AAAGGTATTTATATCAATGAAGAAAAGCAATCATCTTTATGACGTGGAACTATGATTACA
CATGCATTGTGTAGTCCGACACCTCTCTACATCCTTAATATTAGGGCTATGGAAATCTAT
GCGTAGTGCAATTGCTGATGGACTTTTTATGAGATAAAACGTATACAGAACAAATGCTAA
TTTTCTTGAATCTAGCCAAATTCTTGAGAGCCAATACTATAAACAGATGTGCAAGACTTG
ACATCTGCTAGTTTTAACTTTCACACCCCATAATTTATACTTAGGTTCGCCAAACAAACA
ATTGTTGAAATATTGGTAAGATATAATGTCACCACATTAATTAGATGGAATACATTTTGT
ACTATATAATAGTGTTGTGCATAAAATAATATAGTATAATTAGTTTCACACAATGCTAGA
GATTAATTGATTAGACTTACATAGTGGATGCGTCACTGAACCTCACAAACTGTCATGTTT
AGCTTAGTATGAATTATATAGTTTCTTCAGTTGGTATTATATATGTAAGCTTAAAACACT
ATACATTTTTTGAAAGATAATCACTATATGGGAGAAAATTACTTTACTTATTTACCACCA
AAACTTGTCAAGACAAACAATTTTACCATTACCTAATATTATTGCATCAAGGCCTTAGTT
CACTTGCCATGGTAGCTAAAATGAATATTTTTCATCCCAAAAAATGATAAAAAAAATACT
CTTTTTCATTACCTCCTGTAGGTTCTATTGTTATCTGCATCATCATGGAGATAATAATTA
AAGATTTTTCATTAGAGTTGATTATTTCAATGCTTTCTTTCCTAGAAGAGGCATCTACCA
ACCTAGGACTACATGTGAATACGTGATGCGATGCTATGTCACGACGTCGGTGCTCGAGAA
CAAAATTATATTTCATCCAAACCTGTCAACTCCCTCACCCGATAGAGTTACACGCTTGAG
GAAAATTTCTTTCATGTTGGTGCATGCGTTGTTGCCCATGACAGGATGTCAACATGTATG
CACGCATAGCTGGTGAGGCTACTGCCGATGGACCAATGCTTTTCGGTCTCATAAATGTTA
TATTGTCGATGACGTCAGCTCGGCGTGTCATTATGCAAAGGTTGAGAAGCTGATACCGAT
GACCAAATACCTAAAAGTCGCAGCTTGAGTACTGAGTATGTTTACATAAATTTGCAATCT
TACTCGGCCATTGAAGTTATCAAATAATTAACGCAAGGGCTCTTATGATGTCTCTTATAC
TACTAAATAATAACATAAGAAAATAAATTAGGCGTAGGTTTTTTTTCTAAACGTGAGGCG
TCAAGAGCATTCATTTGTTTTCTGCATTTTTTCCAATTAAACATGTACGTGGTATGTGTT
TGAGGAATTTGGGACGTGTTCCCTTTTTCTAGCGTGGTGCTAGATGATTTTTCACTAGTG
CCTACTTCTTCTATTAAGGGAAAAGGCAAAGTGGATTTTTAATGGACAGAACTTAACGTG
TGCATTAAGGACTCTTACTTACGTGATAGGTTTAAACATTTTTCTGTCAATGGCGATGGT
GGCCCTAGCCTGAATTTTGTTTTATCAATTGATGATGCCCACGATGGCTAGGAGTCTTGA
CCATAAAGAAAAGCGTACGTAGAAATATGAGTTTGTATGGCGTACGATTCATCCCATTCA
TGTAAAAAAAATCTAAACATAGCTATCTATATGGATTCATCTGCACCGTAATAATTATGG
ACCAACCAAATTAACGGCTCCTATTTTATAATTAATGTGGTAAATTGTTAAGAGTCTCTA
ATTAGTATAGTAATAGATTGTGTATACTCCCTTCGTTCCTAAATGGGCAACGATCTGCGC
CGGCGGACCGGCGCAACGGTTCGGCCGGTCCAACCCAGACCGTCGGATGCAGCCATCCAC
GTTCGTTGGATCTGCGCATGATCCCACCGAATTCCTTGAAGCAAAGACGTTGCAC