morexGenes - Barley RNA-seq Database

Contig contig_1573456

Source Contig contig_1573456

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1573456 (1712 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1573456

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16460	1	855 bp	MLOC_16460.1	Available	Available	LOC_Os11g05730.1, FRAME:-1, EVALUE:5e-37, 13111.m00557 protein histone H3, putative, expressed

CDS Structure of MLOC_16460

Contig Sequence (1712 bp)

>contig_1573456 1712 assembly3_WGSMorex_rbca.fasta
TTTAGTGGACCCACTTAGTTATTTTACATACGGTTAACATACACTCTATTGAAGAGCTTG
TATGATGTGCTGTTGGTTGATGATGTGGACACTTATACCAACGATTGAACATACGGACTG
TTGGAGATGCTCTAACTAAGCTACAACACCCGCTGGACCCCACATCCGACAACTATGCCA
AGTCACCCACTTGCTGGCGCCAATAATTCCCTCTTTTCGTCGCTTCCCTCGGTCGACACG
TACTTCTTCAGTTTCGTCAGTTAACGACTGAACTTCGTCTCCTGCATCTCTGTTGCTCTC
TGCCATGCTCTTCTCCATCCCCTCTACAGCTTGTGGCCTTGTCACGCTGCGAGAGTTAGC
CAGGAGTGCGTGACAATCGAACTGAGCTGGAGCATTTGAACATCATGCTCGTCAGATACA
ATGGCACCAATTCCAGCAAACAAAGTGCTGAAAATTGACATAAACAAGACATCACTGAAG
CTGAAACCGGAGCAGTTTTGAAAACTCCTTCAGCAAGAGATCTAACCAGTGGGATAAATA
AACCACACAGCTTGCTGAAATCGTAGAAACTGGCAGTGGTTTAAGATCAGATTGGTCACT
TCCCATGTTCCCACTGATGATGGAATAAGATTATCATTAGATACTGCATCACAGCACCGA
CGAGGAAGCTAGTTATAAGCCAGCGAAGAACAAGAAGGATGCGCGAATTAGGCCCTCTCA
CCACAGATCATCTCTACGCCTTCAGATCAGAAACTAGGAAGCAGCAAGCAACCAGGCCCT
CTCACCACAGATGGCACAAAGTTGTGCATCCCTGAAGAGACCGACAAGGTAAGCCTCGGC
GCCCTCCTGCAGCGTGTAGATGGCAGAGCTCTGGAGCACATGTAATATCAACACTAGAAA
GAAGTGGCCCAGTACCACCACTGACACCAAGGCATATATGAATACTGAACTACTCCGTAC
TTTGGTAGATATACAGCATATGCAATGGTTCAGACTAACAGAACTGTAGAGCTCTATGTA
CAGGAACCATTGACGTTCAGTGCACTAGCCTTGGGCAGATTCAGAAACTACCAAGTGTTT
CAATAACAAGACCAGTACACTAGCCTTGAAGGTAATATAAAAGATTTATTCCATTAGTAT
GACAGGGGACTAACCAATNNNTACTAAACATGAAATGGAACAGAACTGAAAACTGGAGGA
ACAACACACCACTTAGTTGGGGTTTCATGCTCAAATTCCAAGAAATTTCTACCAACAAAA
ATGGCGTTCGTTGACATTTGAGGTTTGGAAACAGCAAAGGGCATGACGAAGCACAAAATT
CAGATCTGAGAGCCAACTTTCACATTGCTGATGGCAACAAGAGGGTAACATCAGACAGCA
CAGAAAGAACATGCTGGCACGAACGAGGGATCCTCCTACCACGATACAAGATGAGTCCCC
ACTAAGACGGAAGCCACCATCTCTACACATCCAGACCAGACAACAACTACGAACGAAGCA
ACCTAGGCCCTCTCGCCGCGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTG
ACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGCCCGACGAGGTATGCC
TCGGCTGCCTCCTGGAGCGCGGAGACGGCGGAGCTCTGGAAGCGGAGGTCGGTCTTGAAG
TCCTGCGCGATCTCCCGCACCAGGCGCTGGAA