Contig Data
morexGenes
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Map Locations of contig_1573416 (3969 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1573416

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16447 1 2478 bp MLOC_16447.1 Available Available LOC_Os12g02280.1, FRAME:-3, EVALUE:0.0, 13112.m00156 protein pentatricopeptide, putative, expressed





CDS Structure of MLOC_16447






Contig Sequence (3969 bp)

>contig_1573416 3969 assembly3_WGSMorex_rbca.fasta
TGTCAATGAACCGCGATGACATGGACGACCTCACCAAAANNNNNNNNNNNNNNGCAAGGA
GAGCGATCTTGAAGAGGAGGATGGAAGACTCTGCTCCATATATGATGGCATGATATGGCA
AGGAGATAGATCCTGAACATTGCATGATATGGCAAGGAGATAGATCTTGAACATTGCATG
ATATGGCAAGGAGTGAAGATCGACCAAGATGATGCAAGACCCTCTTTTGCGTTTGTCCTA
CTGAACTTGACTTTTATTTCCGCGTAAAACTATGTTATGTTTGTTTGAATTTGAACTTAT
TTGTGTGAACTTATGTCAAACGCGAGAATTGAGCGTGTTCTGTTTGCGGGTCGTCGCGGC
CGTGTTCGAACAAACCCCGCAGAAGCCGACCCGTAAAAAAGCATATTCGGCGAATATACT
TTTATACGGGTCCGTTTGGGGGGTCTGCATCTGTGCCACCTCGCGTCGGCCCGCAAAAAT
GGTTTTACGCGAACTGCAAACGTGTTTTGCGGGCCAGCATTATGCGGGGTCTGCTAGAGT
TGCTCTAAGGATGTCAATCCTACGACGACCATCAAAGGAAAATTTTCCAAGGGTCCAAAT
CCTCCAAAAATCCTATGCAATTCTTCTGAAAACATGACTCGTTTGGCCCGCCAAACATTG
TACACAGATTTGTTCTGCATACAACTTTTCAACTTTATTCTGAACAAACAACATCGTGTG
ACTGTGCAATGACAGTTACTAGGAGTACAATCCATTTTGATTGCTTGTAATTTGCGGCCG
TATCCTGCAGTGCTGCCCATCTCATCAGTGCTCTCATCAGATGTGCAATGACTGAACAAG
CAATAAGCTGCTCATGACCAGAAAATCATATCATTTGTGACATCTGGTTTCCATGACAGG
AGCCTATAAAAATGGAATGCTGTAACATCGGGAACTTCTTAGCATGGCCTTCAACTTCGC
TCACAAGAATCAAGTAGTAACTGTATCTGAATGCCTCGTTACAAATCAATGGAGCCATTG
AAGTATGCCTGACAGCGGGGTTTTCCGTTGCTATGAAAAGTTCAAAACATCATCAGACCC
GACACGTTGTTCAAAACTGCAATAACTCCATTACGGAATATTTCCGAACACGATTAAGTA
GTTCCAGCGAAGGAAATGAAGCTTTTCAAGGTTTTCAGTGCTCCATCTTAAAACAGGCCA
TTTTCAGCGTAATAACAAGGTCCTCTCATATCTGCTGTGTCAACAGATTGACCAATTCAG
CACTAACCTGACAGTTCACTTCAGTCTTCACTTGGAAGATTAGAAGCAACAACACACAGC
CTACAAAATCACATCAAGCTGCAATAGAAGATATGCACATGATCAAAATATTCAGATATA
TTATGTAACAAATGAGAAATGGTAAGCTACCGACTGAAGCTGTGGCCTGGCCGTACTCGG
ATTGACAAAACGGACTCCTGGAACTGGAGTCGTCATTGTTCGCTCTAGTTTGTGGAAGAA
AGAATTAGCTATGTAACATCAACTTGACTGTGTGCGGCATGCTTCCAAACACCGTGTTTG
ATTATCCTCGTTCTCAGATGCTCAACGTCATCCCATCTCTTTGCTTCTGCATAAACATTT
GATACCGTGATGACATCCCCATCATCGGCGGGCATCAGCTCTTGCAATTTCTGGAAAGCC
TTGTTAGCAAGGTCCATGAGCCCGTGCACTCGGCATGCAGCCAACACCATCTTCCAGAGC
ACAGAGTTTGCCTTGACAGGCATATTATTGATCATTTGATACGCTTCTGCAACTTTACCG
TAGCGGCAGAGCATGTCTATCATGCAGCCGTAATGCTTCATATCCGGCACGATTTTGTAT
TCTGCAGTCATGCTACTAAAATATGATCTCCCCTCGTCCACCAGGCCACCATGGCTGCAG
GCAGTCAAAACACCGAGAAATGTGACATGATCAGGCTCAACTTTCATTGAATCAAAGAGC
TTCAGAGCCTTGTGTGAGTAGCCATGAACCGACAACCCAACAATCATCGCATTCCAGCAA
GTAATATCCCTGGTTGACATGCTTTCAAAGACCTGCATGGCAAGGTCCAATCTGCCACAT
TTCGCATACATATCGACGAGAACGTTACCAACATAACCATCTGCTGCAATGCCCTTGCTA
TCAAGGTAACTGTGGACACCCTTCCCAAGCTCCACCTCGCCAACCTCTGCACATGCACCA
AGAACTGACACAAGTGTTAGCTCGGTCGGTTCGATGCCATTGTCTTGCATCTTTTGGAAG
ATCTCCAATGCTTGCTTGTACCTCCTAAGCTTTACATAGCCACCGATCAAGGAATTCCAC
GACACAACGTCCCTGTCAGGCATCATACTGAAGACCCGTGATGCCTCCTCCATATCACCA
GCCCTCGCATTCCGCACGATCTCGGCGTTCCACCATGAAATGTTCCTATCAGGCGTTTCC
TGAGACACTCGCTCTGCACCATGCAAATCACCTGCCACATCGTGTGCACCCACTAGGGCG
TTCCAGGAAACGGCGTTCCTAACAGGCATTTCGTCGAACACCGTCCTCGCCTCCCTGAGA
CGGCCGAGTTTACCATACATGGACACGAGCGCGTTCTGCACGTAGCGATCCGCAGCGCAG
CCCAGCTTTAGGACGCGGCAGTGCAGCTCCAGCCCCTTCAAGGCGCAGGCCGCGGAGGAC
GAGCTGGTTCCAGAGCGCAGCTTGAAAGCGCGGGCGCAGGATTTGAGGAGGGCGGGGAAC
GTGGGGAGCGGAGTGGGGAGGGAGAGGCAGGAGACGTGGTTGAAGATGACGAGCGAGAAG
TAGGGAACGGAGGAGGAGGAGGAGAATGCGGCGATGGCCGGGCAGAAGAGGGACGGGGAG
AGAACACGCGGAGGGGCGGAGAGTAGGAGGGCGAGGGACGACGGGGAAGCAGGGAGTCGG
GAGAGGAGGGCGCGGAGGAAGGCCGGGTGGTGGAGGAGGCCATGCTTGGTGAGGAGCGCG
TGGAGCTGGTTGCCTGCGGCGGCGCTCCGAGGAGGGAGGCAACGCACGGCGCCGGCCGGC
GTGTTTGAGCCGGGAGCCGTCGAGCGCATGGAAGTTGTAAGAGCATCTCCAGCCGCGTCA
CCAAGCCCCAGGGCGCGTTTTTTTTCGTCGACACCCCAAAAAAACCCAAATCACGTCCCA
CGATGTCGATTTTCGTCCGTTGGGTTCATTTTTAGGCCCGATGGTTTCAGACGAGCCCGG
TTTATTAGGGACGTTTGGAGGTTCCTGCAGGTATTTCCTATTTGACATCATATGCATCGG
TTAATGTGCATTTTTGTTAACTCGCATTTGTGGTGTTTGAACTGGGCTGGCTCATCCAAA
CGCTTGTGACGCTTCTAAAAAAAATACTATGAACTTATTTGGATACCGATGAACTTTTTT
TATTTTTTAACGGATGCTTTTAAGATTGATGAACTTTTTGAATATCGATAAACCTTTTTA
AAATTTGATGAACATCTTTTTGAAAATGAGGAATTTTCTCTATCTCAAGAGTTAGGTTTT
TGCCAGTGCGAATTACCTACAAGCGAGTAATATCAGTGACATGAGGACTTTCACACCTTG
AAAGATTTCGACCATTGCTGCGCTGCACGCCAACTGTCCCCAACCTTATCCACATAAAGG
TCATATCATTAAGGATATTTATGTCAAATCATGTCGGGACTGCTCCTATGTTGCCCCATA
ACCACTAGCTGGTTGGCTGCTCCATAAGAGAAACTGACATTTGTCATTTGAGATCAACCC
ATTCCTCGAAGACTTTGAGNNNNNNTCATCAGTGAGGAAAAACCCCAAACTTCCAAACCA
AAACCCAAAACCCAAAGTGATCGAGCATTACTCAAGAGATTGTTCCTGTGTGGAACCGAC
GCTTGTTACCTTTGAGGCAATGATAAATAGTTATTATNATATTTTCTGTTTAAAGATAAT
CGTTTATTA