Contig Data
morexGenes
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Map Locations of contig_1573372 (4634 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1573372

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16430 2 2551 bp MLOC_16430.1 Available Available LOC_Os04g58860.1, FRAME:-1, EVALUE:1e-100, 13104.m06200 protein harpin-induced protein 1 domain containing protein, expressed





CDS Structure of MLOC_16430






Contig Sequence (4634 bp)

>contig_1573372 4634 assembly3_WGSMorex_rbca.fasta
GAGGTTTCATTAATAGACTACATACGAATGTATATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTGCTTCGTATGTAGACATTTAGTAAAATATCTTAAAAGACTTATATTTATGTA
CGGAGGGAGTAGTTTATTGCGGGCACGATGCCATCATGCGTGGATGGATATGTGCAGCCA
AATATGCAAATATACATCCCTGTCTCACATTTACAAATCTGTCTCGCAACTGCACCGGAG
CGGCATCACAGAGGGCGCGGGTGAGCGAAAGGGACTTGCAACAGAAAGGTTTATAGCCAG
CTGCTACAGCCTACCACCCCTTGTACTACTTCCATTCTCTCTATCGTCTACCACTGCTAC
GAGCTTAACCATATATAGCCACCGACCAACCCTTCCCATGTAAGCTTACCAGATCATTTG
GTGCCAACGCAAAGCATCCACCAACCACCGTCCACTAGGAGTGAGTAGACAGTGGAGTAG
GTAACAAGGACTCTTGATTTCAAGTCTCAGCAAATAAACATAGCATGAACATATCTTGCA
GAAACATCTTATATTATGGGGTACGGACGGAGTAGCTTGTAGTTAAGGTACAGATACTAC
CATACTGAACTGAATTTGCGTGGTTAAATTCAGAATCATGTCAAGCCACCATGTGTACTG
CATCCACTGGTAAAGTAACTAGCTAGCTAGTTGGTCACTCTCTCAGATTTCAAGTATGCG
GCCGTGACGACCGCTTGGCTTTCCACACGCACAGAGACGTGCCGTGCGTGATGAAGAATA
CACACGTACGCAAAAGGACCTTTAAAGTCAAAAAATCATAAAGTAGACATGCGCAGAAAT
TCATGGCAAGAGGGCCCAAGATATCATATATGAAGAAAAGAAAAAATACACATAGCGGCA
GCTAGCGTCACAATCATCACCATGTGTATTTCGGTGACGTGCCCGGATTCCCAGCCAAGC
GAGCGCGCGACCAATTGATCAACCCAGCTAATAACGTGCAATCAGCTCACTGATTAGGCA
GGAGACCGGCAAGTACGTACACTGATTGAGCAGCAGGAGTTCGTAGCTAGAACGTTTTTC
CAAGGGAACACTTTGAGCTAAAAGCTAACACAAGATCCAAGGGAAAGGTCCGAGCAAGAC
GATCACGCCTCGTCGATCTCTTCTCGCCTTTATCAGGAAAACATGTTCGGTTACGAAACT
TACGAAAACGTCTTATATTATGAGACGGAGACGAATGAACCAAGGAAAATTATGGCGCTT
TACTTGTGAACCAAGTACTAGGAGTACAAGTTAGTCAAATGGAGCAGTACAAGTCAAGCC
TTTAGGCATGAACTTCCTTCCTCTCTCTCTCTCTCTCTCCCTGTACATGGACATGGTCTC
CAATATCTCCACCGTTCTTCACGTTTACTCCATATATATGGATGTATCCTTTCCCCCTTT
TCAATCAATCAATAAATATTCCCTTCCACTCCAAGCTAGGCTCCAGCACCAACCAAATTC
TAATCTAAACAACAAGAAAAGCAGTAACCGATCGATCGAAGCTTCAGCCAATTTTCATCG
ATTCATGCTTTCTTTTCTTTAACCAGTCGAGATCGATTCTGCCGAAAAGAACGGCAATCG
AGCCCCAAAAGGAAGAGGAAGAAACTACGTCGGGCAAAAGAAAAAAAGAGAAGACGGATG
AGATTCAGGAAGCTATCCAAAACCAAAAGCAATGAATTTCTTGTCTGGACAAGTGGACAT
GCATGCACATGGTTGATCGATGGAGCTCGAGCCGAACCGGATCGATCAGATGTCGACGGC
GCAGGCGGCGGCCTGCTGGAAGCGGAAGTAGTCGGGGCCGCCGCCGGTTGTGGCGCCGTA
GCTGCCCTTTCCCTCGTTCACCCTGATGAGGGCCGGGCAGTTGACCCGGAGGTGGTAGTG
GCCGGAGATCCACGTGCCCACCTTCCACCGCACCCAGCCGTCGACGCGCACGTCCACCAG
CACGTACCCGGCCGTCTCGTCCTGCGCGAGCGCGATGGCGAGCTGCGGCGGGAGCACGAC
GCTGTCCATGGATCGGAGGTAGGGCGACCACACCGACTGGTCCCGGTGGCCCTGGTAGGC
GACGGGGAGGCGGGTGGGCACGGTGATGGCCACGCCCTTGTACTGCGCGTACATGTCCGT
CTCGTCGTAGTAGACGCCGACGCGGTCGTTGGTGTTGCGCGCCGCCACCGTGGCCTGCAT
GGTGGTGAAGAGGTAGGCGGAGGTGGGCGGGGTGACGTTGAGGCAGAGCACCGCCAGGTC
CTGCAGGTAGAAGGTGGGCTTGTGGGGGCGGAGCACCAGGTAGACGATGAGGATGATGAA
GAGGGCGAGGAGGACGAGGGCGAGCAGCGCGCCGCAGCACTTGCGGTAGAGCCGGCGGCG
GTGGCACTCGCAGCCGCCCTTGTGCCCGCCGCAGTCCTTCACCGCCATGGATTATGGATA
TGGATGGTGGTCGAGCGCCTCAGCAGCAGCAGCAGCAGCAGCGTGTAATGGATGGATGGG
TGCTGCAGCAAGATGGAAGCAGGAAGCAGCTAGCAGCGATGAAGCGAGGTGTGAGGCTGT
GATCGATCTGTGGGATGGGAGGAAGGTGGAGAAGAAAAGGCAGTTGGGCACGAGGTGGTA
TATATACATCTACCACGGCAGCGGCAGGAGGAATTGGTGATTGGTGTGGGGTTAGGAGGA
GGAGGGGATCAGCATTGGTCAGTGTGAGGAGGAGTACTGACAAGTTGGGTGTTGTCGGCT
TGGAGCAGCTGGTACATACAACCTGCAAGTGGGCCTTGGTGAGCAGTCTCTTGCTGAAGA
AGCACTGTTAATTAGAAGTAGTGGAATTGTAAGCCTGATAAAACATAAATGAGAGGTGGT
TAATGGTGATGAAAAATGGAGCAGTGTGGGTGAGACGGCGAGTGCCATGCTAGGTTCCGA
AAGCAGCAATGAATAATAGGCCGGGTTCAGACAGGGGATCGAGTCATCGAGATGAGAAAC
GAAAAGATGACACTTTTCTTTTCTAGTGATGATTAATAGGCCGGGTTCAGACAGGGGACG
CCTTTAGTTCCTCACATAGTATGTTACAAACAAAACTTTATCAGTTCAGATGCACCGCCA
GTCGCTTGTAAACGCGTTTTGTGTCAGTCGCGTGAAAACAGCCGGAGGGAAGAAGAAGCT
CGTCGGAGAAAGCCCTCTAGGTGTCTTAAGATGGCAGGCACCTCCGTTGTCTATCTTAAG
GGTGCGGGGTGCATGATGCAAGCTCGTTGAAAAATAAAATGACCATCGTCGAGGCGAGAG
GGATGGTCGGGGTGGCGGCAGCACGTACGACGGTGAGAGGCGGTTGAGGGGCTGGCGCAG
GAGCCGAGCGCCCCAACTGCGGGTAGTGGTGGGTGGAGGGTGGGGCGTCCACATCAATCA
AATGGGATGAAGCCAACACAATCCCAACGGAAAGCTAAAGTGCAAGAATAACAAGGAGGA
GGAGAAGAAGAATCGTAGCACGAACACGGGTCCGCGTCACCTTCGTTCCGTGTGCACGCA
GCTGCAGCCAGCCAGCCCCACTCTCTTCTCCATCTTCATCACAAGAAAAAAATGCGACGT
ACGCAACGCGGCACAGCACATGCATAGCATGGTCCGATCGATCGAGCTACACCACCATGG
TCCACGGCCAAGATCGACATGCATGCATGCATGCATGCATATCGTCAGTACCACGTACCA
CGACGCGTCTAGCCTAGGATATGTTGCCAGATCTGTCCTACGAGTTAATTCCTCGTGTCG
GACTATTTCTAATCTGATACTCCTGCGTTAAGCTTATAAAGATTCCACTAACAGATTACG
TACGAAGCAAAATAAATGAATCTATATTTTAATATATGATTATGTACATCCGTATGTAAT
TTGCTAATGAAAACTTTAAAAGAATTATATTTACAAACGGGTGAAGTAGATCGATCGATC
GTCCTAGTAGTACGATTAGGATATATCAACATCAGTTCATAATCACCATGCAAATTTATT
TCCAATCGTATATCACCGTGGTGAGAAAGCGGAGCAACATACAGTAGTATCGTTCAGAGC
CGGCCGCGAGTTATACTTATTCCATCTCTTCATATGCATGCATGTGCGATCATCAAAACA
ATCGAGAGGAGGAGGACGACGACGATACGCTATATATGTAGGTACGTACGTCCGTCAGCC
GAATTCACGGACCAGATCCATTGGAAGGACGCGCAAAAGGTGTGGGGGTGGAGGGACGCG
GTCACACGGAATCGGAAGCTTCTCCTCCTCCTTCTCCTCTTTACACGTTTGTGCATGCGA
GTCGTCCGTCGCTCGTGCCAAAACAAGGGCACATATGCAATGCCAGCTACTTGCATGGTT
CGATTAGAATACTCCTTAGAGCATCTCCAACAGCGGCGCAAAAAGGCGTGCGCGCTAAAC
CGGTATTTTACCGCGCGCGGGACATAATTGCGCGCTCCAGCGGCGACGGGAAAACCGCGC
GCGCGGGAACCGCTAGCGCGCGCGCCATTTTTGCGACGCCGCGTCCCGCGCGCGCCATAA
AAGGCAACGCGCTGCCCTGCCTCTCGCGTCGCGTTCTCTCTTCTCTCCTCCTCTGCCGCT
CGCGCCGCCGCCGC