Map Locations of contig_1573264 (5225 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1573264

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16399 2 1585 bp AK361366 Available Available None





CDS Structure of MLOC_16399






Contig Sequence (5225 bp)

>contig_1573264 5225 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGGGGGTGAGGCGATGTTTAGAAGCCCAGTGGCTGAAGCGGAGA
AACGACAGGAGAGGGCGCAACGACGAACAGAAATCGATGAGCGTCGGGCTCAACTCGTTG
CAATTTGCAATCGAAGCATGGGCGTCATCGCGCTTGGAGCATGGGGGTACCCGCAACACG
AAGTGGAAGATAACGGAGGGGATGCTGGTGGAATGAGCACGTCCTTGGAGCGCTACCTAG
CAGTGGCAGGGAGAGCTGCCTGGCTAGGTCCTGCCACACGCATCATTAGCAGGTTTCACG
CGGCCAGAGCGGAGGAGAAGGGCTCGAGCTCCAGGGCGTGAGCCGCTGCCCTGCTTGTCG
ATCTAGAGCCTGTCAGGAAAGGGGCCACTAGAGCGCTCGTCGACTGGCCGCTGGAGGCAC
GTCGACGCCCATCTCGGCTGCCATGACGCTCATCACGCCACCCTTGTGGTTGTCGTGATG
ACCCTCATGCGGAACGCGTGAAAGGCTTTTGAGGATGCGATCACCCCATGCTTTTGGACC
GGCCCCATCCTTCACGGCCTCGGTCACCCTCGTCGTTTCGGTCCATGCGGTCGTGACGCA
CATGAGGGTCATCAATGATGCCGAAACGCCAGTTGAACGGCTTGGACACCATGTTGCCAA
AGGAGGGTCTTCATGGATGGCAAGATGAACCAGGACACGGCGCTCCACCGCTGCTTGCAA
GGAGGGTGATCTAGTTCACCCTCGGGACCTTGCTCAGGCATGGAGTTCATGTCCATAGGG
CCAGGACCTTTGTCTCTGTTTTGAGCTTGGACACGGTCGATCGAGCAGCTGGAGCCGATG
GTATTTGCGACGACAAGCTCGTCCCACGCGTGCAGGGGGAAGCCCTCAAGGCAGAGCCTA
ATGTGGTGCTGGAGGTTGACATTCTTCGAGTGCCCTTCAACCGCTATACCCGGAGCTGTA
GCTTGTTGCTGAACGTTACCGATGGCGCTGCTCGGGGTAGTGGAGGGCAACGACGACGTA
TGCGGGGTTGATGGATGAAGCACACGTGGAACTGCTTGGGGTAGTGGAGGACAACGACAA
CGTCTACCTCCAACACCGCAATCTTGTCCGCGATGGCCGCAACCACCTCATCGGTGGAGA
TGCGCTGGTCCCTATCGAACTAGGCCACCACCACGTTGGACTCCAGCAACGCCACCTCCA
TCTGCGTCGCCGGGGTGCTGTGGATGACGAAGAAGACTTCAAGGCGCACGGTGTGATCGC
CAGGCTTGGGCCGACACAGGGGTAGCCATGGCAGGTGCAGAGGTTGGGGGGCGAGGCTGC
TGCGGACGGAGCACGGGCCGGCGGTGGAGACGGTGGCGCCTTGCTGTGACTGGGACCGCC
GGGGCGGAGGTACGGGCGCGAGGTGTGGGTGCAGCCGCGTGCCCAGTGGCCGGAGCGGAA
ACAACGCCGACAGGTGACGGGTTGCAGCAGCCGACTGCATGATGGCGAGGCGGAAGGCAG
TGGTAGCACAACCCTTTTAACCATGCAGGGGGAGGAGGGGAGCGTGCAGTGAATGCAGCA
GCTGGTGCTGGTGAGGCCGGCGGGCTTGGCCGACGAGACCTGACCTCCACCATGGCGCCG
TCACCTCAGCCTCAAGCCCCGCGGCTGCCGCCCCTTGCGGGATTGAATGCTCGGCGGTTT
ACTGTCTTTTACTTACCTGTTCCACTACTTTGCTTCTATAGGATCTCGTTGAAATTTCTT
TGCTCTAGTAAAACTGTTGATTGAGCAAAGAGACTTATCATGCCAGTATTCCATTCCGAA
AGTAATAGTACTACACAGTTGGGTCATTACTGTAAGATCCTTTTAAAGAGTTTATCTCGA
TTTATTTTGAATTTGAACAGTAAGATAAAAAAATTGGACAACATATCGGTAAGATACTTA
ATCTTGTGGAGTTAGTGTACTTGAGATGCCTTGTGATACTTACTTCGATACTTATGGAAA
CTATTTTCTTGATATTTGAAGCCAGAAGATGCTGCTGAGAAAATTAACTCATGGGTCAAC
AAGTCCACCAGACAGACCATTACCTCACTTCTTCCAGATGGATTAGTTGACCAGAATACA
GGGCTTGTACTTGGGAGTGCACTGTATTTTAAAGGCAGATGGCTGGATAAGACTGATATA
GGGAAGACTGCTGAACAAAAGTTCTACTGTCTGGATGGTACACATGTCCTGGTGCCTTTT
GTAGAGTATGACAGAACTCGTCTTTTTGCTGAACACGACGGATTCAAAGTTATTAAGCTT
CCTTATAAGCAAGGAAATAATGAACGGAAGTTTTCTATGTACATTTTCCTCCCAGATGCT
CATGATGGCCTGTTTGAGTTAACCAAGAAGATTTTCTCTGAACCGGCATTCTTAGAACAA
CATTTACCGACAGAGAAGCACCATGTGGGTATTGGGGTGCCCAAATTCACGATATCTTTT
CAGATCGACATGAAGGATTTTCTGAAAGATATGACGCTTGAATTGCCATTCCGACGCGAT
GCAGATTTCAAAGATATGGTAAAGGAAGGTGACTCAGAGGAGTCTTTATTTCTATCTGAT
GTACTTCATAAAGTAATTTTGGAAGTAAATGATAATGAAATTGAAGAAGCTTCTGTGAAA
AAAAGCATAGGCAAGCCTTTGCCAACAGAGCACTTCACAGCCGACCACCCTTTCTTCTTT
CTCATTCGGGAGGAAGTGTCTGCTACAGTTATCTTCATGGGGCATGTGCTTGATCCTTCA
ACATAGTCCTAACATCAGGTTATCACCAAATTACATTTATTTGTTGCATTATTCTAACTT
TGGTGATCTGGCTGATCTTGAGTTTAGTACGCAAATAGTTTGTGCACTGTGCCTGCTCCA
TTTTTAGTGGCATGCTGACAATTACTTGTTCTGTTCAATTTTAAGTAGTTATCTCCACTG
TTGTGGTAAATCATGGGAAGACTATATGTTTCAGTCTGTTGTGTAGAAATCTCTATCCAT
GTGTAATTTTCTATGAATTTGGTAGTATTGGGTCTATCCCTTTGTGAGAATGGAATGATA
GCCCACTGGTGGTTGTGCAGTGGAGTCGCCGTGTGTCCACGGTTAAAATCCTATGCAGTT
GATTTTACCTTGTTAGTCAGTTCACTGATTGAATAAGCCTGAGTCTTTCATTTTTTTTTT
GTTATTGAGTTGATAACTTGTGAGTACTTTTAAGTTCGAACTACCAGCCTTTACACTTTA
CTTCCGCATCGATCTTTTCTCAAATATATTTGTCATAGATCCGTGATTTTGTTCCCATAT
CATCTCCATAACAGTGCTGTTTAGCCTTTTCCTGCCATGAATAAGGTACTCCCTCATATC
CATATTAATTGTCGCTGATTTTGTACAACTTTATACCGAATCAGTGACAATTAATATGGA
TTGGAGGGAGTAGCAATGTTACTTACATACTCCCTCCGTCCGGTAATAAATGTACCTTTT
CTTTTTCTGTCAGTCAAACTAGTTAAACTTTGACTAACTTTATTGAAAAAGGTGCTACGA
TTTATGACATCAAATTAGTATCAATAGATTTATCTTTACATGAAGTTTCCAAATATATCA
TTTTCATGTCATATATGTTGCTACTATTTTTTATAAAGTTGATCAAATTTTAAAAAGTTT
GACTAAGTACAAATCTATATGTACGCTTATTTGTGGACGGAGGGAGTAGAGCCTTTCATT
CACAGAATCTGTTGACGTTTCAGGAAAAATACACCGGCATAAATATTTTCCTTTGATGAC
ATTTCTTTTGTATAATCATCAGGCTTGTCCGATCCTTGGTGGTGAATGAAGCACATGCGT
GTGACTCCGCCTGCAGTACTATTCTCTCACATTATTGAAAAGAGAAGAATCTCCTAGTGT
CAAGGTTCAGTGGAAAGGAAATAAAGATACCATCATCTGACTGTTTAGGTTTTATGTGCA
CCACTTGCTGTCCCTGACAGTTGTTTTTGTTGTGAGAAGCACAAGCAACCCCGCCTATTG
AACATGACACTAATCAAACTAACAAAATTTCAAATTTGTGAGAGGCGCCCTCGAGACGAC
GAGTTGAGCGATTCCCAGGGAGGAAGAAGATTTCTTCTTCAGCTCTCTCACGCTTGGCTC
TCAAGCCAACGGTTGCTTCCCCAGCTTCACAGATGGCTACGCTATACTGACAGTGTCGGT
GGCTTCTTCAGGTCCTTTCTCCCTCGATGGCCACACTCTGCTGGCGCTCCGTTGTAAGCG
CATCCATATCCGTGCGGCCGTCCAAACATGGTCTATGCCGTGCCAATCTGCCGGGCTGCT
ATTTGTCGTGCTCATCTCATCTGTAGTGGCGATGGAGACCTGTGATGAAGTTGGTGGCCT
TTCGCCCTGGAAGAAGAAAAGGATGTTTCGTACGCTCTCAGAAACTGCTCGCCTTTCTGG
CTTTTTCTCTAATAACTGCTGTTTGTTCTTTCGTTGTCGTCCCTTTTCCCTCCTGTTCTT
GGTGATCTGAACAGCAAAAACAGTTTTATTAGGCAAATTATGCTGCGACATTTGCGCAAA
ATGTGACCTACACGTTACCCATATCAAATAACTACATTACAAATATATGATAGAATTCCC
AGGAGAGAGTTTATATATGGTTGTTGATGCTAGTTCCTCACGGATCAAGCGCGGCTTCCT
ACACCGGAACGCGACGTCCAGGCTAAGTCTGCAGCTGTGGCAGATGGGCATGCACATGGG
TGCAAACGGAAATGCCATGTCTCCACACAAAAGGAAGGGAAATGTGTGACCACAGGTTAG
ATTATTGAACTGTTAAGGATACGCTAAACCTTGATATGGTGGTGGTAGTAGACTAGTAGG
CAATATACCTGCCACCATCACCGGTGCCAGGAGGCCAGTCTGGCCAATTCGGTGGATGGA
TACTTCCAACCAAGGGCGCAGGCTGTGTGGGCTCCTTCGTGCATGCCAACCAGGAAACCC
GGATGTATGGGCTTGTGCCACTGCCATTGCTGGCGCTCATTCTGAGGAAGATGGATTCGG
TGCAAGTCTACCAGGGAGTAAAAAATGGGGATTTTTTCACTGTTTTAATCCTTAAGGCGT
AAGTTCATCACAAAACGAACTGAGTTCGAAAGTATTTCATGTTTTGACCCTTTTGGAAAC
GCCAGAGACCGTGGCGTTGCAGGACTCAACAGAAACGCCAGTCTACTGGACGTTGCAGGC
CTCAT