Contig Data
morexGenes
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Map Locations of contig_1573254 (5089 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1573254

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16398 3 2190 bp MLOC_16398.2 Available Available LOC_Os08g02250.1, FRAME:-3, EVALUE:0.0, 13108.m00162 protein IQ calmodulin-binding motif domain containing protein, expressed





CDS Structure of MLOC_16398






Contig Sequence (5089 bp)

>contig_1573254 5089 assembly3_WGSMorex_rbca.fasta
ATTAGTTAGTTAGCTTATTATTTTAATNNATCAAAATGATTATAAAAATATTAAAGCGTG
TGGTATTTTTTCTCCCGTTGCAACGCACGAGCTCTTTTGCTAATTTTTAACTAAGTAATG
TGGTTGGGCCATGAGGACGACGGACTTTTAACTCAGTTGTTTCATGTTTTTATAAAAAAA
AAAACAATGCCTTGTTTTATGTTTTTAGCTATTCTATATGTATTTTGTTTTCTATATCCA
CCACGGATAAGTTGTGGTTGAAGCCACGTGTTAAGCGCTTAGACGCAAGGCCTGCATGAT
CAGCCACTGCACTACACGAAAAGCACGGAAGACGCCTACGCAAGCCACGAAAAGCCAGCG
CTGATTCCGCTTTCCCGAACCCCAACTAACGAACCGCTCTTTACAGCCTGCGCCCTGACA
CTCAAGCCCCGCCGCACAGAACAACACCAAAATGAAGAAGAAGAAAAAAAGATTACGAGA
AGGTCATTTATCGCCAAGGAGATTACGAGAAAATTAGCAGAGCAATTAAACGCTGGCATT
ACAACGAACACCTCGCCGGCGATTCAACTCAACGGAGCCAGCGGCGGAGATCAGTGGTGG
ACGACGGGGAGACTGGTTCCCCGCCGATGCTCTCTGCGCACGACAGAGACGACACGGTGG
AGCGCTGCTCGGAGGTGAACCGCCCCGTTGCGCTCTTGAAGCTCGGGCTCCGCAGGCTTT
GCGCGTACCCAACGCCGTACGGGTCCTGCGGGACGGGGAACGACAGCCGCTTCTTGGCGC
TTCCTCCGGCGGGGTTATTATAGGCGGTCTGTGGCCGGTCGCGCTCCGGGGTTGCAGGGC
GTTGCCGTGGCGCGCTCTGGGAGCGGATACGTGCCTTTGCAGATTCCGTGGCCGCCATGT
AGTTCGGCACCGCCGAGCCGGAGGACGCGTGGCGCTGGGAGTGCAAGCTCGGTGTGTAGC
TGCCCCCTCCACCGCCTGTGCCGCGCTCCACTCGCGGGCTCGCGGAGCGCACCTGGATCG
GTGGCCTCGCCTTCCCCGGTGACGGCGTGACAGAAGCCTGGTGGTGCGCACGGTGCATCG
GCGAGCCGTTCCCGTGCTGCGACGGTGGGGCATGCCGGCGAGGCGTGGAGTAGGAGAATG
GCCGCGCAGTGTCGATCTCCAACGTCTTGACCTGGTCGCGGTGGTCCGTGGACGCGCGCC
CGGGTGCCGCAGCAGCAGCCGCCGCGGCAGTTCGGGTGCTGCTCCTGTTTGTGTCAAACG
ACGCGCGAGACGCCATCCACCTCTCCGCCCAGCGCGGCTGCCCGTCGACGTCCATCTCTT
CCTCGACTGACGGCGCGGGGTTCCTCCAAATCTTTAAGCCAACAATAAGATCGAACAGTT
ATAGTACAAAACATTGTCAAAACTTTAAATGCAATCAACAAACATGTTGCTGGAGTGGAC
GTATTGACGCACTGAGTTTCTTACTTGGTGAGAGAAGGCGTATGAGAGAGCTCTCTCACG
CTTGAGTGCAGCGTCTTTCCTCGTCTGAAGCATCGCTTGAATCTCCTCTATCGTCCGCGG
CCGGTCGTCCCAGTCTTCGGCGGCGAAGCTGCTGCCGTCTCGCGACCGCTCCTGCAACCC
AATCAATCCATCACCATCAAAATTGTAACAAACAGCAGCATGTGATCAACAGATGCGAAT
ATTGATTGGTAAAGACGGACCACAGAGCGGCGTTCGGCGTATTCTTGGGTGTACTTGGAG
TCCCACAAAGCGGATGTGTCAACGCTGTAGGAGGATTTGCTGCTGCCACAGGCAGCCGCA
CCGGCGGCGGACAGGGACTCCTGGGAGAGTCGCATCCGCTGGTCGCGCACGCGCGCCTGG
ACGCGCACCAGCGCCTGCATGCACCGCAGCGTCATGTTGGCCTGCTTCCGCACGTTGTGC
CCGCGCACTAGCGCCTGCAGCTTCACCAGCCCCTTGAGCGCGCGCAGAGCACGCCTCGCC
TGTGCAAGGGCAGAAACGCATTAGGGCGAACGCCTGGAGGGAGAATGAGATCGACGGCAA
GTGAGACGTAGCCATTGCAAGCAGTTAGCTACCAGGTAGCCTCGGAAGGCGGTCTGCACG
ACAATGGCGGCGTAGTGCTCCCGCACGAAGCTGGAGGAGGGGCGGGTCAGGCGGACGACC
TCAGCCGCCGCCTGAGCCGTGGCCACGGCAGCCTCGGCCGTCGCCGCGGTCGCCACGGCG
AGCGCGATGGCGTGACGTTGCTCGTCCGTTACAGCAGGCGCAGGTGCCGACCTCGCCGCC
GATTGCTGCTGCTCCGGCGGCGCGGTAGCAGACGCCGGGGAAGGAGACGGGGACGAGGAT
CTCCTGAAGAGCCATCTCCTCCTCTCCCTCTTGGTCTGCGCGGTGCGAGTGCACGAGACA
CAGCGTCAGTCATGCATTAACTTGTACTCCGGAATACATTAGTTAGGACACCGAGAATGA
CGAGGAGTAGGTTCGATAAAGACTAATCAAGAATGAAACGCCGAGAAGGACGGCCGGAGA
GATGCACTGAGAGAAGAAACGGGGGAAGGTGGGCGACCTTATCCTCGTCGGCGTCGGGGT
CCTCGCGCAGGCGTGCAGACTTCTTGGGGCTGTCCTCCTTGGACGGCGAGCGAAAGGCCC
GCTTGACGGCGGTGAGCCACGACGACCCGCCCTTCTTATTCCCCATGGCGGACACCACCG
GCTCGCGGTTGCTGTTGTTCCACGGCCGCGGGCATCGACCCACCTCCCTCCGTCGCACGG
CTACGCTACGAGCTACTCGATCCTAGCGTGCTAGCGTGCGGCATGGCAGGAAGCGGCCGA
GATATTATTATTGCCGCGGCTGGCAGGCGCGGGCAGTGGGGGGCTTGATGACTCACGCGC
CCCCCTGCGTCTTTTATGTGGAGCCATCCATTAGCAGCAGACGCGCAGGAGAGCGCAGCG
GAGTGGATGAGTGTAGTGAAGAAGACTGTGCTGCCGTCCGCACTGCTGCTACAAGTTGTT
CACTCGCTGAGAGGTGGGGCCAGAATCCCTTTCCCCATGCTGTGGTGGAGTGGGTAGGGT
CTTGGTGGGTGAACGTTACGATGGTGTGGAGCCCGGGGGGAAAGCCTTTTGAGCCGTTTG
TCTAATCCGTTCGGGTGCGATGATGAGTGGACGGACGTGTGCGCTGCAGGTGCGAAATGA
TTCGGGGAGCATTTTTTTCTACTACTACGAGCATCATTTTCGAGTATATGTACATGATGC
TAAATGAATTGATAATGACTGAAGAAAGTGTCTAGAGGGGGAGTTGGCACCGTTAGCTAG
CTAGGCACTCCAAGTAACCACCAACCGTGAGCAAATATATTTGAATAAACTTGTGTGTAT
GGTTGTATCTCTACTTATCCTCAATGGATTTATGTAATTTGTCGGCACGCACCGCACCTC
ATGCAGACGAATCATTTTCTGTTTTTGTGTGTGCCGAGATCGACCGATCTAGGGTTGACT
GCCTCAACTCAAGTAGTGGCATGCAGATACGGTGGGGGTCCAGCTGCGTGCGTGCTCCAG
CAAGTCACATGCCCGCATTGGTGACACATGCGTGGTCTGGACCGGACCAGTAACCGCACC
GGCTAGTTGGCTGCCCATATGCACCTTGTTAGAAGTACTTGCAAAAATTCAATGTGTTGT
TGATGGGCCGGGTATAGTTACTAGGAGTACGTATTCCAAGAAAATATGGGAGTATCGTGG
ATCGCAGTACTACGTGCAGACGAGTTTGGATCATACGGCAGGATCGCACCTGCATGCATG
CATGCACTCCACTCCAAGCAACTTCAAGAGTCAAGACCTCCGCATGAAGAAAATAGAGGA
GGCAAGAACAACTCCAACCTTTGTTTTATCCGGATTTTATCCGTTTGGAAAAAAAAGAAC
ACGCCCCTCCGCTTCCGGTCGGGCGGCCTTCCGTGCGTTTAACGGGGTTGTTCCATCCAA
AAATGACGTACACATCGGCAACTAAATCCTAGCCCCACATCATCGATGATGACGTTGAGT
TGCATACATCACCCGAATAGACATGACAAAACAAATTTTAAAACCTAAAATAATAATGTA
ACACCGGCCCAAAGTCAAGTTCAGAAATTTCTACCACAAATTTAAAACTAAAACAACATA
AAAAAGTTGAAGCCTTTCGTCGTGGCTGCCATCAGTTGTCGGTATTGTCGTCGTCCTCGT
CATTCGTGAGGTCGATGTAGGGCGGAGGCTGCCACATGTGGGCCAACGGGCCCTGCCACG
TGGGAGCCATGGCCTGAGGCGCCTGCATAGGAGCCGGCACCACCTCTTCCTGTGTCGGGA
ATGGTGACCAGGCCGCGCCGCGCATGGGCTCCGGCGTGCACAAGAACGTCTCTGTCCACG
ACCACCTCTTGCCAACCAGCGTGGGGTTCCTCGACGTGGTCTCGTCCTCCTCTTGCAGCT
GCACGCCCTCTATGGCCTCCTCCTTCACCACGGCGTTGTACTCCAGGATGGCGACGTCGT
CGGTCGCGGAGAGGGCTATCATCTCTTGGAGACCCTCCCACTAGGCCTCGTCGTGGGTGT
TCATGGAGTCCTCCATGACCCTCCTGACCAGTTCCTCCTCCTCCTCGACCGTCATCGGAG
CGGGTGCTGGCGGGGACGATGAAGGGGACAACGTCAGGCCGTGGACCAGCCTACATCCGC
GATGCTAGGGATGGCTCGTGGCGCGCGCGCGGCATAGCGGGCTCCGAGCATGACCGGTAA
AGAACGATTGCTGGCTCAGATCGTGTTCGTTGTGCATCCATGTGTCCCACAGAGGTGAGG
AGGGCGTGTACCTCCAGTCGTTGCCGAGATCAGGTTGCAGGCAGGCACGACATCGAGAAA
TCTAGTCGCGTCGGGTACGGACGCTCACCAGGATCGGTGGGATGGGCACACAGTCGGTTT
AGAGGTGCCAAATATTGGGGAGGTGCACATTGATATGTGTCCAACGTATCTATATTTTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTATT
TTATATCTTTTTTGGAACTAGCGTATTAACTCAGTGCCAAGTGCCACTT