morexGenes - Barley RNA-seq Database

Contig contig_1573218

Source Contig contig_1573218

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1573218 (5450 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1573218

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16386	3	1606 bp	None	Available	Available	None
MLOC_16385	1	679 bp	None	Available	Available	None
MLOC_16384	1	1717 bp	MLOC_16384.1	Available	Available	None

CDS Structure of MLOC_16386

CDS Structure of MLOC_16385

CDS Structure of MLOC_16384

Contig Sequence (5450 bp)

>contig_1573218 5450 assembly3_WGSMorex_rbca.fasta
AAGGACCATGTGCTGCAGCCCCACAAAGGACTATGTGTTGCAGCCCCACAAAGACTATAG
TACATAGACTTATTCATCATGTTGAACTTGTTAAGCTCCATGCAGCCAACGCAACCAAAA
GAATGAATTGATGGAAAAGGCTAGGCAATCCACATACACACTTCAACACCCCCTCTCATG
TGTGACGCAGGAAGACAACACATGGATAGACTCAGAGGTATGGCTCAAGAGGCCTATACA
TAGACAGAAAGGGGGGGACAACAATTTTTGGATAAACTGTGAACGCCAGGGCTTGAACTC
AAGACCTTAGGTTCTAATACCATGTTAAACTTCATGAACTAGCCGACGCAACCAAAAATC
CAAATTGATGGAAAGGGCTAGCCCATCCATATATGCACTTCAACAGAACTGGGTTGTTTG
CTATATTAATTGCCGACTTGTTGTCACACCATACATTCTAATAGACTCCTTGTCTATAGC
AACTCACTCAGTACCTGAGACATGTCTCTATATTCAGCCTCTGTTGTTGATTTGGAAACA
ACGGGTTGTTTCTTGCTTCTCCAAGACACTAGATTTCCTCCTACGAAAACACAATGGCCT
GAAGTTGATCTCTTGTCATCAAGCAGCTAGCCCATTCAGCATCACAATAACCGTCTACAA
CAAGGTGTCCATGACTCTTGAACAACAACCCTTTCCTATGAGTACCTTTCAAGTATCTCA
AGATTCTATGTACTCCCACAAGATGTTCACTTCTAGGTTCATGGATGTATCTGCTCACAA
CACTTACTACAAATGCAATGTATAGTCATGTACGACACAAGTACAACAAATCTTCCCATC
AACCGCTGATATTTTTCTTTATCCACGAGATCACCAAATTGGGCGGTCACTTTATAGTTT
TGATCAATTGGGGTAGAAGCAGGTCGACAGCCCAACATACCAACATCACAGAGAAGGTCC
AAGGCATACTTTCTTTGAGAAAGAGCTATACTTTTTCCAGACATGGTCATTTGTATACCA
AGGAAGTAATTGAGTCGACAAGATCTTTATCTTCAAAGGCCTTACTTAGACACTTCTTTA
ACCTTGCTATCTCTACGTCATCATCTCCGGTGATAATGATATCATCTACATAAACTATAG
GAATGGTTATTTTCCATTTAGAGTGTCTATCAAACGATGTATGGTCGCCATTGCATTGTC
CACACCCCATGTCACACACTGCCTGTCTATACTTGTGAAATCGAGCTCTTGGAGACTACT
TCAGTCCATAAAGGGCTTTCTTGAGCTTACATGCCTTGTCGGTAATCTTAGAAGTCGAGA
ACCCATGTGGGATCTGCATGTAAGCCTCCTTCTGCAAGTCCCTATGCAAGAAAGCATTCT
TTACATCAAGTTGATCACCCAAAAATTGGTGCACATGAGATCAGAATCCTCATAGCGTTC
ATCTTCACTACTGGAGCAAAGGTCTCGTCATAGTCAATGCAATGCGCCAACGATGGTAAA
TCGGTGGGCCAAACCAAAGAAAGATCGTCTCTTTAACGACATGGTCATGGGATACGATCC
AACAAAAGAGATGTTGAAGAATATGCCCTACTCAAGGGGTCTAAGTACTTGTTCAAAACT
AAATCATCCTAGAGCATGGGCACATAGGACAAGATGAATAGAAGGTTAAACAATAAAGAA
ATATTTCCTACCGGCAAGCACCCCACTAACTCACACGTCCTTCTGGCATCTCACTGCCAC
TGGGCCCGAGAAATAGCAGAAAGCAAAAGGTGTGAACCTTGTAATCTTTTCTATACAAAA
AAAAACCTCTTCAAAGCTGAACATTGTGGGGTACTGTTGTCAGTTGAACATTTCCTAGTG
TCTTCAGCGAATTTAAAGGTGATAAAAAGGCAACGCGGTATTCCAGCGGCCCGCCACGAC
GCTCACCCCATGGCAGAGAAACCCTTCACCAAGCAACGGAGCTCAGCATTTCCCCGATAC
CGATGCCTCCGATCTCCCCCATCGTTTCTGTTCCCAAGAAGCAGGCCATCGGACCGTGTA
TGAAGCCACGAGCACGGAAGGTCGGACCTCTATTTCTTCACCTTCCTTCCCTCCCAATTG
GGCATACGACTCTCTTCATGGAGGTGTTTGGCAGCAAGGTCACCCCGTCCAAGCTCAGCA
GCATCACACCCATCCTGCGTGTCACTGCCGAGATCGTGCCCGAGCGCCCCCAAGTCGCTT
ACCTCTGTGCTTGCATTTGTTTTCATGGGGAGGACATGCTCAAGGGCACGTTATTGCTAC
TGCTCGTGGGTATGTCGCTACTGCTCCTACAATGCAACAAGGATGTCATGCTCGATGGCG
GATTTTTGGCACCCGTCAGCACAACAACGACCCACCACAAAACATGACCGTGGTTGATGG
ACCAACTCCGGTGACTCATAGTCCATGTTTACATGAGAAGCTCATCACTTATGTGACCAG
GTGAACGCTAACTTAAGTTTACCTTGTAACCTTAATGACACAAGTATGCTTTCATCCCCA
TTGTCGTTTGTTTAACTTAGGTATATCACATGGAACAAATCCAACAACCTATGAGCTCTT
GAAGCAACCGATTTGGAGAAAACAAGTTTCAAGTGAAGCTGATGCTGTCAGTTTTTACCT
CTTATGTTTCGTTGTTCCACACCCTTTTGGAGAGACGGGGCCATAGGGGTACATCAAATT
TACTTTCCAATGCAAAAGACCTCACATCATTTGGAGTTGTGAGTCAAAAGTTTTAGTCAT
TCTCGTGGAAGGTATCCAGGATGTCAAGGCTTCGCGAATTTCCGAGGAGCTCTCCAACAA
CTCCCAAAGTTGACTGCTTATTCCTCCAAGGAAGCCATGCAAAGCTGCTTACTTTTGAAA
CCCTTTCACGCCTAGCTAATGGGGATTGTCCCAGCTATAAAACCCCATCTCCTCCATCCC
TTTGGGAACCTTTTGTCAAACTATTCAGCTACAAGCTTATGCAGCAAGACTGCTAGAGAT
CCGAGAGATACTTACTACCTTTGCTCTTGTGAGTTCATCCGGATTCGTGGGAAGGAGCCT
CTAGTTCCCCCTAATTCATACTCTACAGTTCCGGCCGTTTTGTGCGGGTTATTCCCGGTT
TGTGATCTGTGATTGTTGGGACAGCGGGTTGGAGTTCTTGTAGCTCCAGTCAGCCATCCC
CAACGTACGGGTTGCATCCAACCTTGGCAGGTATGAAGCTAGTTATCCCGGCTCCTTGCA
GCTAGTTATCCCTCCCGATTCGATCCTACGACGTGAAGATCGGACCACCCTCGAGCATGA
ACTCGTTCAGCGGGTTTGCACTTATCACCACCTCCATTGCTACTGCCAACACCTGCCTCC
GCGTTGGGAGCATTCCAATCGATGAGTTCAACGTCCACGCTAGTATCAGGGAGTCAATAA
CACCCCACTTCTTTCATTCTGAACTTCCCTTGTTAGAAGGTTATTCAACCAACCCAAAAC
ATATCCCATCAAATCCTTTTGTCTTCAAGATCAATAGGGCCCACCTCAACTAGCTTGTTG
TTCCCACCATTCAACTTCAAGTCATTTGGCATGAGCTCAAGCTTAAGAACCCTATCTGCT
TGGAACACTACAAATGCACCCACCTTCTGCACCATGTGTTGGAGATGACCCCTCGATAAT
TTTCGCGGTTAGGAGCTACGCTAGTTTCTCCACAATAGAGACCAGTTCAAACCCCATGAC
AACCTCGATCTCTTCTTCTCCTAGTTGTACCACCTCCAGTGTTGCCTCCTTCATCGGCAA
TCAGAAACCACATGACCACCAGGATCACTCACTTCAGCTACTCACTTTAGCTATGAGAAC
CTCTTCTACATGCGCCACCACCAAGCTTAGCCAGCAGTTCCAACAACAGCAACTCCAGCA
GTGCCTCCTGCTCACAGCCCACAACCTATGTGTCGCCCAACCACCAGTCGATCCGCGCCA
TCCCATGACACGCCATCACACTGCCCTTTGCTGCAACCACGGCACAGCTCCAGACCACCA
TGCTGCAACCGCAAGAGGAAGAAAGATGAGCCCTGCCGATGACGCTGCCATCTCCAGGGC
CCTGGCCTCTGATACCATGTAGACCGAAGAGAGGCATACCAGCGTTGTGGTCATGTGTTG
TGGCAGCACTCAGAGGCAGACAACTTTGGGCCTCTCCTTGTCTAGGTCAACTAGCCACTA
GACCGGCATGGGCCTGGGCCACATGGGCTAAAAGTGATGGGCCACAGATAACACTATTTT
TGATTTTCCTGGCTATATAGAGATGTTGAAAAAATATACAAGTTCCAATGTGATGTTGCG
CATTGTTTAGGTTTCCAAAGATTATTGACAAATGGCCATCATTGCTTCCTGCAAGATTAA
AGAACTACTCCCTCCATCCCATATTAATTGATGCTCAAACGGATGTATCTAGCTGTAATT
GACGCTCAAACGGATATATACATATTAAGGTAGCAATAGAAAACGTATATTCATTCCTTA
GAATTATTGCCTAGATGACATTTTCAACTAAAAGCTTGTCAAACATTACAGGATAACACA
ACTAAAAAAACATAAGACCTTAATTCGAAAAGATTCATGAGATAACAACGGGTACCTCAA
AACATGTTTGAGCTTGATCAAACCTGCGTTGAATATAATAGTGTTGCCCAAGATTATGGA
AAGCAGCTCCAACCCTACAAGAGGCATGTAAAGTATCTTCATGCAATTCCAAAATTAAGG
TAGTTCTCCAACATGGGGAATTTAGATGAAACACCGTACGCATTGACAAGTACAGTCCTT
CCACTCACCAACAATGGTACACAATGAGCAGGCAGGAATGTGCAACACATACTAGAATGT
CATGAACAGAAATATCTGTCACATTACTCTTATTCATCCCAAAACAGTAGTATTTTGCTC
CTGACTAGAACTTTATTTTTAATCCTTTTACAAAATGAGTCGAATCAAAGTCACTGAACA
ATGATATAGAACACAATATAATCTAAAAATTAAAGTACCGTATATCATCAGGTCCAAATG
ATTGCTCCAAGATTTCAATCGCTTCCAGATATAACGGCTCAGCTTTCTCATGCTCTTTCC
TTAGCCTATAAAACTCTGCCTGCAGAACTTAGGATATTAAATAGGGGAACAAAAAGGAAA
GCTGCTTCATGCAAAAGTTGTATTAACTTTTAAGGTAGGTTTACGAAAGCCTACCAAAAA
AGAGAAAAGAGAACATGGCCTGCCTGTTCAAATTTGTAGACAAAAACTATTTGAGTGCCA
GTGTGTCAAATGCAACCCGGGGGTAATACAGTGGCATCTGGTACAAGAAAGAAACCAACA
ATTCCGGTCGTTTGAAGTTGTTTGGCTGAGAGAGCTTAGGCCCTGTTTGGAACCATAANN
NATTATGATAATCTGGATTATGAACATAGATTATATAATCTGGTTTATAA