Contig Data
morexGenes
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Map Locations of contig_1573096 (5036 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_1573096

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16333 1 1481 bp MLOC_16333.1 Available Available LOC_Os05g07210.1, FRAME:+2, EVALUE:4e-169, 13105.m00788 protein metal cation transporter, putative, expressed





CDS Structure of MLOC_16333






Contig Sequence (5036 bp)

>contig_1573096 5036 assembly3_WGSMorex_rbca.fasta
CAAAGCGAAAGTTTCTGCAACTCGGCCATCGTTTCAGGAATGAAAGTTTCTCCAACTCGG
CCGTTGTTTCAGGAATTATAGAATGCCCGGCTGGCCGTTGTTTCAGGAATTATAGGATGC
CCGGCTGGAGCGGATCGGAAGGTTGCGCGCGGAGATCGGGACAACTGCGCGTACATTGGA
CGGACCTCCAGGTGGCGGATGTTTACTAAACATCCACCGGTAGATGCGTAGCAGCCCCCT
TTAAATATAACCTATTTGAAGACATTATAGATTATATATAAAACTAAATTATCATAATCT
GAGAGGTTTGAAAGGGACTATCTTTTTTACTACCGATGATGTGCAAAGATTGCCCTAAGG
CTGGTCTTTCGTGACAAAGATGGTGCAACGACAATACATGAGCAAGGCCCACTGACCAGT
CAGCGTCCGTCTACGAAACCGTTCTTTACTCTCTCATAAATAAGTTTCCACAAACAAAAC
CTCATCGCGCACGGCCTCCCCGCGGGCCCACCTCGCGTTGAAACCTCGCTCGTTTCTCTT
AACCACTCATCAAGTCTCACAAGTCCTCGCTTCCGTCTCCTACCGCCCGCCGACGGAACC
CCGTCGCCGTCGCTGGCGTGCGCGGGCGCGATACTTCGCCGAGCACCTCGCGCGCCGCCA
TGTCCGGCAGGGGGTGCCTCCCGGCGGGCGAGCTCGCCGCGCTGTCCAGGGTCTGCCGCG
ACGGGGCCGCAGCGGCGCGGCTCAAGACGGGCTCCCTGCTCGCAATCCTCATAGCCAGCG
CCGTCGGCGTCTGCCTCCCCGTCGCGCTCACCAGGGCCTTCCGCGGACGGGACGGGTACG
CGCGGGGCCTGCTCCTCGTCAAGTGCTACGCGGCCGGGGTCATCCTCTCCACTTCCCTCG
TCCACGTCCTCCCGGACGCCTACGCGGCGCTCGCCGACTGCGCCGTCGCGTCGCGCAGAC
CCTGGAGGGACTTCCCCTTCGCGGGGCTCCTCTGCCTCGTCGGCGCGCTGCTCGCGCTCC
TCGTCGACCTCTCCGCCTCGTCGCACCTCGAAGCGCACGGCCTCCACCAGCAGCCGCAGC
AGCAGGAGGGCCAGCCCTACGCCCCAATCCCCACCACCAAGAAGGCCCCCGTCTTCGAGC
TCACCGGAGAAATGAGCCCTAGGAAACGCGCTTTCCTGGACGAGAGTGACCGCGACGACC
CGGCGCCGCGCGACGACAAGAATGGCGGCGACCCGGACCGGGACGACGTGGCGCTCTTCG
GGCCAAAGAAAGGCGGCCGGTTGCCCCGCAGCGATGAGCCCCTGGCCCCTATTGTCGGCT
GCCATGGCGCTGGGCATGAGGTGGTGGAGGTCGGGGAGGGGGAGGAGGAGGAGGCGAGGA
AGAAGCAGAAGATGGTGTCCAAGGTGCTGGAGATTGGGATAGTGTTCCACTCGGTCATCA
TCGGGGTGACCTTGGGGATGTCGCAGGACGTCTGTGCCATCCGGCCGCTCGTCGTCGCGC
TCTCCTTCCACCAGGTCTTCGAGGGGATGGGCCTCGGCGGCTGCATCGCACAGGTCAGAG
TCCAACATATGCCGCTCAATTTGGTGTGATGTTTCTGTGCAATTGGAGAATTCATCATCG
AATTGTTATGCTATTAAGAGAAATTCGTCATTGAAAAGTTAATGTAGTTAGTACTCCCTC
TCCTCACTATTATAAGACGTTCTAGCTTTTTTTTTCTGATTCTGATGTATTTAGACGCGC
ATTAGTGTGTTTATTATTCACTCGCTTCGGTCCATATGTAGTACTCCCTCCGTCCCGAAA
TAAGTGTCTCAACCTTAAGAGTACAATTTTGTATTAAAGCTAGTATAAAGTTAAGACAGT
TATTTTGGGACGGAGGGAGTACATATTGAAATATCTAAAACATCTTATATTTATGAACGG
AGGAAGTACTGTTTTGTTAATATTGTGACTTTCAGTGTGAGTTTTGTGCTGCATATTTGC
AATGGTGTGAATTAGGAAGTTGGCAGCTGATTTAAAAAAAAAAATCATGTCAGTGTTGTC
TTTCCTGTTGACTGATTTTCTTAAGAAAGACGAGCCTATCATGGATCTGTGGTCATACTT
TATAGATTGAGTATAATAACCTATGTTGATGTCTAATACAGTATTAAGCTAATGCTTTGC
ACATACAAACGAGAAATGACAAGGGTTTGTTCCGTCGTATGTTGATTTAGAAGTTTGTTT
TTCTCTGTCTTTGGGTAAGCCTGTCATGCCATTGTTTTAGTTCAGAGATGGAATGTTTAG
CATATACTCCGAACCACTTTGTCAGCAAAGTAATACTTATATTTGAATATGATTTGTTAA
GCTCCTCATGTTACCCTGAACCCTCTAGGTAACTTTGGAGGTGATTATTTGTGGAAGAAT
CCCTGTTGTACAGCGAGCCCTTTTTTTTCTCACAGTTACATTTACCTTAGCAGTCTTGAG
GCCTCAACTTTTTGTGTCATCTATACTCTTGGAGGCCTAACTGTTATTTTAGACATTTCT
TCCCATTGAAGTCTGTTCGTCCATGTCCACTCCATTTTGTCTTTCCACATTTGCACTAGA
TGAGGCTGATGTGTTACACACACAGGAGAAGGGGCAGAAAAATAGCACTTGGTAGGTCTT
TAAAGTACTTTTTAATTTGGTGGCATCGCGCTGGAGAGCAATTCCACAAAACACTTTGAC
ATGCTAAGGAAAAAAAATCTGAAAATAAATAAAGGAAAGAGGTTTCAAGACGTGCCCAAA
TGGTAGAACGGCCAATCGATTGAAACTGCAATCTCCATTTTTAGCAAAGGCACCAGTGCA
TTTCTTGTTCTTTTCTCTGAGGTCTGAGCCGGCAAAGCATTGCCATAATATACCAAACAG
AGTCACCACCTGCAGCATTCATTTTGTATATATGTGTGTTAAATAGTCATAACTTTAGAT
GGCACTACCCCCGTGGAACAATTTCCAGCTGTAGACCTTACCACTTTCTGTATATGTGTA
TTCAATTATAATCATCCATACTTGCCATATGACGGTCTGCTTTAGAAGTTCACCTCTGAA
ATTGTAACAGCATATAAACACCAGCTAGAGGGGTTTTGTGGGGTTCATTGATGACTGAAC
GTGTGCTTGTCCATTTCTCACAGGCTGGTTTCGGAATGGCAACAGTGGGTTACATGTGCA
TAATGTTCTCAGTGACAACACCATTGGGAATACTTCTTGGGATGGCTGTCTTCCATATGA
CTGGTTATGACGATAGCAGTCCAAACGCCCTAATAATTGAAGGCCTTCTTGGTTCACTCT
CTGCCGGAATCCTTGTCTACATGGCGCTAGTCGACCTCATTTCTCTTGACTTCTTCCACA
ACAAGATGATGTCGTCATCTCTGAAACTGAAGAAGGCCTCTTATATTGCATTGGTGCTTG
GATCTGCTTCTATGTCGATATTAGCTCTCTGGGCATAGGTCATAGCAAAATGTGTAGAGG
GATCATTCTCAGATTCCAACATCTGGCATAGGTTTTGTGAAGTTCATTGATGACTGAACA
TGTACTTCCCCTATGTATATCTGAAATGACACGTTATGGGGAATTGGAAATGGAAATTGA
CCAATGCTTCCATTACTTTGCTGCTTACTCCCTCCGTTCCAAAATATAAGACCTTTTAGA
GATTACATTAAAAGACTACATACAAAGCAAAATGAGTGAATCTCTACTCTAAAATATGTC
TATATACATCCGTATGTAGTTCATAATGCAACCTCTAAAAGGTCTTATATTTAGGAACGG
AGGGAGTATTACTTATGCCTGTTATACACTAATGTGGATAACCAACACCCTGATTTACCT
TTCAGTTGATACCGTACGCTGTAATAGACTGAACTTTTCTTAAAGATGAAACCGACTACG
CTGTTTATGTTGTTGCCAAATTTGGAATTCATGTTCAGAAGGAAGGCTCATCCTTGTGTG
TAGAGTTAGTAAGTTCCTTGTATGGCTGCAAGCCTGCAATTGCAAATTTTGCCGCACTTA
ATTAAGAATGTTCATCATCAAGTCTCTGCCCAACAATTGCTCTCTGGGCTACAGGCTGAC
ATTTTACCACCAGTAAGTATGCCCACCATGATTTATTTATTTTGAACTATCCCACCATTG
TTCGTTTTGTTCTGCATTTAGTTTCAAGAGAAAAATACTAATAGTTCCCCTAGCGCCATA
TTACCATCTACAGGCAAGGTGATAATTTACCATTACCTGTGACAGCGGTTCCGGACAAGG
TGGTGGATGCTTTGCTTTAACGTGGCAAGTATGCTGCCCTTCATACTTTACAATTATATC
TGTGTAATTTTTTTTATACTCTATATTCCATTAGATCTTGGAGCCATTGATTTTAGTTTC
TCAAACCTGTCCGAATTCAGATTACATGATAAATTGTTCAACCTAGGTCAATTGTTTGCA
AACTTGAAAGCTCCTCTCCATTATGCTGGCTTCGAGATCCATTGCCTAGCCATGTAAGTT
GTTAAATTGCATTGCAGGAATTCTAAGCTGTTGTAAGTGTCCAAGCCGCGATGAGAAATG
ATCATTAAATTGATTGCTAATGCTCCTTAGTTTAAGATTCAGATACATAAAGGGAAACCT
GGTTGATGAAGTTTCCCTTGGAAAGGTTGAGATGGCTGAGGCATCGGACACAGGAAGTAA
AGGCTAACTCATGATCAAAATAGGCAAGTGGTAGCATCCTGGTAGCTACTCCTGATAATT
AGTTAGTACTCCCACCGTTCCAAAATAAGTGTCTTAAGCTTAGTATAAATTTATACTAGA
GCTAGTANNAAGTTGAGACAGTTATTTTGGGATAGAGGGAGTACTACTTAGTACCGGTAG
TAACAGTAGTACTACCTCCGTCACGGTTTAGAAGGCACGGTTAAGTTTGCGTGCATTTCC
ACAACACACAAGGTTTAAGGCGCATTACATTTACTCCTAGCAGCTAATTAGTACTCCGTT
GTACTACTTCTATATGCATGCTTAGTGTGAATGCTATTTTTCAACTTATTTTACAG