morexGenes - Barley RNA-seq Database

Contig contig_1572981
Source Contig contig_1572981
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1572981 (6483 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_1572981

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16296	2	2661 bp	MLOC_16296.2	Available	Available	LOC_Os01g10690.1, FRAME:-3, EVALUE:0.0, 13101.m01155 protein POLD3 - Putative DNA polymerase delta complex subunit, expressed
CDS Structure of MLOC_16296

Contig Sequence (6483 bp)

>contig_1572981 6483 assembly3_WGSMorex_rbca.fasta
GGGTGGGGGGGGGGGGGTCCGGGGGGTCCATGGACCACCCTGCAATTTATCTACAGCCTA
TATATTATAGCAAAAATGAGTAAAATTTAATATGGATAATTAAATACAAATGAAAAATTT
ACTACTAGACCATCCTGGATTATTGAGCTGGCTACGCTACTGCTCACGGATCAAACCTTA
GCTGATAACTCGTGCATTCCGTGAAGACGTTTCTTTTTCTTTCTTTTCAATGGTTATAAG
GTTGTCGTGACAATACCCGCCAAAAAATAAAAGAGGTTATTGTCATGGTGATGTACTTGT
GTTGATATCGTCAATTTTAAACTTCCACATCGTGTGAGGTTATCGGTATGGTGGTGGTGA
TGTGGTGTGCATGTAGATTTACATCAATTATTGTACTACTCTATGTTACCTCTAAGAAAA
TTGCAGGTAAGTGATTAGCTAAGTCATGGGGCCGTCGATGGGCACGTACTTAACTCTCGC
GTCATGTTGGATGTGAGGACAGATTTTCTTAGACGGCACGACACGGGGTGACGTGCTCGT
CTCGGTAGGCCCCGTGGTTAAAGGGTATCGTGTGACACGGGCAGCGTGGGCCAATGAGTC
TCAGGATTTGGTAAAGCAAATCTGATGGCTGCAGCGTGCGGCGAGATCTTTGTTTCCCCG
GCGGATACATCCGTCGTCAGGACTCAGGAGGATACTGGCATCATGCAGTGGTTACACGGG
TCCCAGTGCGCAGGCTTGTATTGTACACTGTGCAGTCCATAATTTTCCTGCTGTTTTTCT
AGTTGGGCTCGTGCTGGGCCGCTCTCTTCCTCGTGTCATCATAAATAAGCTGGATTTTGT
CTCAACAGAAAAGGTGGATTATTTTTGTGGGCGTTGGATTGGATTGCCTGTGCGACGACG
TACACGCTGCAAAAAAGGAAGTCAGTAGAGTTGGCACGTTCACGTCTGTAGACGAGACGA
GACCTAACGCACGCGGCATGGCATGCACAGAGACGACATAGACTAGTAGATAGAGTGGTA
GTACAGAGCTCCTTGCTCGACTCGCCATCCTCCTCGTGTCTCCGTATCGCTGCCGTTTGC
TGTCATCTTAAGCCACCCTCGATGATGACAGTTTTCTTGCTCCTCTTTTCTTCTCTCTCG
GCCTTATCGTAGCGAGATAATGACGCCGTCTAGCTCGGCGTGGCGCAATCATGCCATGCG
GCGTGCATGATGCGTGGGCGATGGCAAGCCATCGATGGCAGGTCGTTGGGAACGGAAGCC
CGCACGAAGGCGGCTCGGAGTCGGAAGACTCTACTCTCCAGCAGCAGATCTTCAGCCTTC
TCCGCCACGGCTTGGCTAGGCGGTGAGAATCACACAAGCTTATATGGAAACTAAAGATAC
GACAGGATCATACCGCTGCTGTTGGTAAAGAGATCGCGCTTTCCTTGCGTTTCACTCATC
GCCTGTGGAAACGGATGCTGCCAATAGGCGATGGTTCAGTAAAGAGATAATGGATTTTTT
ACTGACGGAGGTTGACTTGGTGCGTCAGCTAAGGTGAACCCACCTACACATGGAACGTGC
AGCAGCAGATGCTGCACAGTACAAGTGTCAGAAACAGCAGGTTGCGCCCATATTATTCCG
TGAAAAGAGGGTGCATTTTTTTAATCTGAACCCGACCATACCGCGAAGTAGGCACGCATT
GCGTATCTGCATGCGCGCCTAAATTTTCACAAAGCCATATCGTCAGCCCATGCTCGTACT
TTTCACGAACCATGTGTTTTGCCTCCAACCTCAGGACAGCAACGTGCGTGTACAGAGAAA
GACACGAGGTAGCATGTACAGCTAGAGAACACTCTGAATTCTAAAACAGGATGCACATTC
AGTAAGCCCAGCAGGATTCATGCCAGCCACGCAGCAAGCATGGTTCAGCCCATCTTGGAT
CCTGAATCGGGAAGAAGAAACCAACACCAACTACTAGTACAACACAAAATGCTACAGGTT
ACTTAAAAGAAAAGCTACGACGCACGAGCTGCTTGGTGAGCAAGTCCTTGTCCGAGGTGA
TATTCAGGCAGAGCCAGTTCGGCTGCAACGGGTGGGTGCTTGGAAAGAGACCGTTTGATC
CATCAATGGCTTCGTTATCAGATGGAAGGAGACGGGCTTATTATACCTTCTTGAAGAATG
ACATTATGTTCTTTCCTTGCTTGGGGGCAGCAGCCTTGGCAGGTTTCTTGCTGCCTGCTG
TTTTACTTGGAGCATTGCTCCTGTCAGTGTTAACTGCTGGCTGTGGCTTGCTTGGAAGAG
TTGGCCTGCACAAAACGGAAACATGTTGATTTGGCAGGTCGAACAAAGAGATAGATATGC
GGGAGCTTAAATGTGCAAAATATACGTTGTTGTGCCATCCGATGTACTTGTGTTTCTGGC
TAATAAACTAGATGGGTAAAGCTCCTTTTAGAGGTCTGAATTTGTGTTTTTTCTTCCTAC
TGTGTATGATATATGGTCACTGGCATAAAGGAAACTATTGCACTAAATCAATTCATATTC
CTTGATGGGCTCTGATGCCCGATGAACTAAAGAAAAGGACGGTTCCTAAAGATAACTGCT
TCAGTACCAACAGCAACAGTGTGTGGCGTCAAACTATATGGCGAAAACATACAATTGACA
AGAATTTCACAGAATACAGAATAAAAAACAGCGCATTACCTGTTACTGGCATCAGTAGTG
GTAACATTTTTCTCTGCCTTATCACTTGCAGGAGCTTCGCCCTCCCAGACAACCTCAGTT
ACTAAAATAGAATAAGCAAAAGCTTCAGGGAATTATAATCACGGGGATGGAAAGCAGATG
GAAGAATTAAGCAAAAGGAATAACATAAAAAGTATGCAAGCCATGGAAATATTACTTAAC
AAAAAAAGTTATGTGACACCCTCAATTAAATTTCTAGACTCCTCACATATGTGCATTCAA
AACAAAAAATACAGGAAAACAATATTAGATGCACAATCTTATACTTGAGCTAAAAGGAAT
ATTGACCACAGATAAGACAAGTCTTTTCATGTTCACAGATAAGACAAGTTGCTTACACAA
AATGTTATTAGGTGGCTTGATAAGCTTCTCGACATGCTAGCATATTATTACAAAAACCAG
CCACATTATTATTAATATTCTGCAATATGTTGTCAACAAAAACAAACATGCACTTGTTTA
CAAAAAAAAATAGAGTATGCAGTACAGTTGCAGCAAGGGGAATTTAAGTTCTCAAGGTAT
TTCTAGTTTTTGCCTATTTAGGAGCCAGTTAGACTACGTAAATGATATAAGCATGACAGA
GGAATGAATGGCATGTTTCATGGGATACAGTTTAACTCTACCTTCTCTCCCCCGCTCATC
TATACGTGTCTTCAAGACCTTCCTTCTTTTAGGTGAGGTGGAAGCTGTCTCGGCAGCATG
ATCCTTCTTATTTTCATCGATTGGTGGCTCATTAGCCTTTTCTTTTAAGGTGATCCCAGA
AGGGTTGATAGCATTGTCACTGCTAGTTTTGCATTCAGAGGTAAACTCAGAATCAGTCCC
TTTTGTGACGCCCTTCACATCGCTCACTGTATCCTGTTTGCTTTCCACTTTATTCTGTTC
TGATATATTGTCTTGTGCAGCTTCAATGACAGGATTTCTGGCACGCTGTTTTAGTGGCTC
TGGAGATGCAATGGCTACAAAATCATCATCATCATCATCATCATCTGAACAATCAAAGAT
CGCTCTTCTCTTTCTGTTACTTGCACCATTAGAGGCCCGCTTGTAGTGTGCATTTTTTTC
ATCATCGCTGCTATCCGCATCTGCTTCTTCTTTTGCACATATCTGTGCATCAGCTGTAAC
TGGAATTTACAGCATGTCAATTTCATCAGAAATGTGGTATACTTTATGTATGAGAGTTGA
TATATGTACTTGAAATCAACATGCAAGAAAGTAAAGCAACATGGAATAAAACATGAGATT
TTGTGAGAAAATACCAGCAACACTTGGTAGATCTTTAGCTTTAATGACAGCTGGAGCCTT
GGGTTTTGCAGATGCACGACCCCACATGGTAGCCAGGGATGCACCATTACTGGGTAGGGT
CTTCCCATTCTGAGCTTTGGTTTTATTTGCATGCACACCAACTGATGGCTCTTTGACAGC
CAGAGCCTTAACAGTTTTATCCAAGACCGAGGCATTATCCTTCTCAGCTTTAATGCTGGT
TTCCTTCACTGGATCGGATGGTTCAGGTAGATCTTGCTGTCGAACAATAGAAGATTGCTC
TTTTGTAGCACTACTAGGTTTTGGCACTGCAGGTGCTATAACACTATTTGTAGGCTTTGG
GGGCATTGAGCTTACATGCTTCCCTGTGGTAGTTCGCTTGACAAAAGAATTCCTTACACC
ACAGAACCTGTGCAAGAATTCAGAAGCAACCAAATTCAGATCCCCATTAAGGGAAAGATA
TAATATGAACATTGACATGCTTTTCTTATACATATGGAGAAAATATTGACATGCTAAAAA
ACACAAAATGTGTTACTACCTCTGTTTTTTAAATATAATAAGAGGTTTTGGCAGCTTAAA
TTGAACTGCCACAACGTCTTACATTTAGGAACAGAGAATGTACTATTTAATACTCCCTCC
ATTCCTAAATATAAGTCTTTCTAGAGATTTCAGGGACTACATGCGGATTTATATAGACAC
ACTTCAGAGTGTAGATTCACTCATTTTGTTCTGCATGCAATCCATAGTAGAATCTCTAAA
AAGACTTANATTTAGGAACGGAGGGAGTATATATTCTCTTTTATAACATATTGCACCTGT
CTCTCTCACACATTCCATAATAATCAGAGACCAAGTCTTCTCTTACAAATCCTTTGTAAG
TATGTCTGCACATGGTTTGGGGGGCAAAGCAAGGGGGTAAAATCAGCAATACCTATTATC
TCTCAAACAATTTTCTTCATCAAATGGCTGGTTGAAAAGCTCCTCTGCCTGCACAAATTC
AGGATTCCAAAGTACAGCAGTATCTTTTGGAATACAAGCCTGGATACTGTAAACCTGAAC
TGAACAAGAACCTTTAAATGTCCGCCTTGCTTCTGCATCGTGCAAAGAAAAATGTTTAGA
AGGAAGGATGACTCTTAAAATCAACATATTACTAGAGAGCACGGGAAGGTAAGTACACTA
TATTTTTATGCTGAACTCCAACAAACATGATCATGTTAATCATAAAAAGAATGCTATAAC
TTGAGGAACTGTACACCCAAAAAATAAATCTGATTCCCCGCATTACCTTCAAGGTTAGGG
CCTGAAGTGAGTTTTACACAATAGTTCTCGGGATTGTTCTTTAACCACCCAGACACACTG
TAAATAACTTCGTGATCAGTTCCATGTTTGTTGACAAACTCCTGAAGCAACCTGGATAGC
AGTAGAGACTAGTCAGGTGATGATGCTATGTTATGCAATGGAAATGATAAGAGAAAGTGA
ATTATCACCTCTTGGCATCATTTGATGACACAGAAAAATTCCGGCTTAGCCATTTGTACG
AAATCTGTTTGAAGAACACATATAGAGTTTGCAAACGTTAGACATGTTGTAAACAATCAG
GACGGACTGAAAACAATGGCCAAGCAGCAAGCACTAAACATGTACAGAAAAAATCGTAAG
TGATGAACAAAACAATGATTCACTATCTGGAGAATCACCCTGAAATCTGAACGAACTCAT
AGTGCAATCACATTGGATGTTATCTGATGCCCGTCTCTGATGAGATTTTCATGCTGAAAT
AATTTTGCCAGTTGTAAACTGAGCATCACGAGCTTAATCCTCCCTACCCCGAGAGAGGAC
TATAGTAATTTTAGCTAGTCATCTTGAGAAAGGTATCTAGCCTAGTTTCTACAATCAATA
CAGAAATTGCGCATCCATTGGAAGGAAAAATGAACTTAACTAGCACAAACACACAACAAA
TCACCACGATATAATATTTTCGCTTCCTTTCCAATGAAAACTTCCCACATGTACAAACGT
TGACGCAGAATGAGACACTAAACCAGTCGAAGAAGGAATCCAGACTTATTTCTGCAATCC
ATGCAGAAATTGTGCACGAATGGAGAAGGGCACATTTTCGTCATAAAAAAAAGAATGGAT
CTAACTAGTACAAATGCACGGCTAATCACACAAATGATATGTGTCTGTTTCCCTTTCTTT
CGACCCCCCATCCCACCCCACACACACACACACAATCATACGTTGACCCAAAAGGAGGCA
CTAGACCATTTTAACGGCACCAAAATCACCAGAAGGTACACCTCACACGAATCTCAACCC
TAACTCAAATCATTCGCACCAGAAGGGGACAGCAAGAACAATACAACCAGCGGAATCCAA
GAAATCGCGTCTCCCCTGCTCCTCCACGCGGAGAAACCCCGCGCACGCAGAATCGAACGG
GCGAACCGTCGGAGGGCGATTGAGCTGGGAGACGGGGCGGGGGGAGGGGGAGGGAGGGGA
GAG