Contig Data
morexGenes
Links



Map Locations of contig_1572826 (5375 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1572826

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16235 3 2178 bp MLOC_16235.2 Available Available LOC_Os01g13710.1, FRAME:+2, EVALUE:0.0, 13101.m01507 protein transposon protein, putative, unclassified, expressed
MLOC_16236 2 1749 bp AK251220.1 Available Available None





CDS Structure of MLOC_16235






CDS Structure of MLOC_16236






Contig Sequence (5375 bp)

>contig_1572826 5375 assembly3_WGSMorex_rbca.fasta
GGGGGCCCCCCCCCCCCCCAACACACACGTACACACATACATTGCAGGGCACTGTTTTTT
AACAGAGTATAAAGTATTATAACGATTTATTTTCCATAGGGAATTTTATCTATTTGTTTC
TTTCGGTCATATCGTAGAGAAACTGAATTTTTTGACATTTGGCTATGAAGTACTATGAAA
CACCCTGGAAAAGTAGCATTCGTAATGTTTTAATTTATACATTCTTCTTAAATTTGTATA
ACTATTGTGATGAGTTACTATTGTTGGATAACAGCTGAAATTGATGGAGTATGATGCTGA
CCTGCCAACGGAGCCAGGAGATTACTAGTCTTTCAGGATGAGTTGACAAAGAAAGGAAGC
ATGCTTTTCTTTTTCTGTATGTGAACTACGATGAAATTTTTAATAAATGATGTTTGATAT
TGCTTAAACTTCATTCTCCCACCTTCATCTTCATTAACCAGAATCATTATGGTTATGTGA
TGAGAACCGTGCTAGGGGTGTAGAAGTTTGAATCGCTAGCCAAATGAATACTATGCTTGA
CCTTTTGTATCTGTTTGTTTGGTTTGTCAGCATGATCTGGTGATTAAAAGCCTGTTCCCT
TTCTTTTACTGGCAATGTGGCTTAGCATCAAGCATATTTTGATCCTTTTAGTCTTCGCTT
GGCAATCTCATTTATCTTGTACAACATTGTTGTTTCAATAATGCTCCTACAGGCTACAGA
TACGTAAAAAATATTTACACAGGCAAAAAAGTCAAGTATGCAACTCAAGGAATTCACATG
TGTAGCTGTGCACTAAATAACTTGATAACAATATGATCTGACATCATTTACAAGCAATTT
CTGTCAGTACTTGTCTATATCATTGCGAAGTAGTCACTTTGGGTAGGAAGTGCTCCCGCA
CTACCTCGGTCTGATGACTAGACAAGAACTTCATGCAGATGGGTGGCTCGATTTGGAAAA
TTGAAAGTAGTGCTGATGGCAATGCCCAAAGTCCATCTCCACAGATCAAACCTGATGCTA
CTACAACTGCAAGCATATTTGCGCTTTTCTTATCTGTTTTCTTCCAGATAACTAACAGTA
GACTCCCCAAGGCCATGTCTATTGCAATATTCGGTCCGATTAAGAATGGAATTGCCATAG
CCATGGCGTTTGGAATGTAGTTACTTGCCTTCCACTTCTTTGCTTTGGCTACTGCTGACA
GGCAATCCAAGCAAAAGGCCATAAGGAAGAAAGCTGCACAGAACTCAATGGAGTGCTTTG
GGAGTATCTTGGTTCCTTCAACACTTAAAACTGCGAGCCCACGGTATGCGGTGGCCAAGG
GTGCCGAGAATACCGATCCAGCTTCTCCCAGATGCTCTTTGCCGACAAGTTTTTCGAAGG
ACAGGAAGACAAGCGGGTTGATCAAGCAACCAAGTGCAGTCCCAATTGCTTGGCTTATGA
ACATGGACAGTGGCGAGGTGAGTGTCAAGTATCCTGTCTTGAAGTCATGCATGAGCTCAG
CGGCATTGCCAATGATCATCAACATGACACCACAGGCAGCAAGACCGGCAATGACGCCAC
CAGATGCTTCACCAACCCATGCCCCAACAAGGAATATAGCGAGCTTCGCATAGACGGATG
CCAGGGACCAGTCACACAGTCCAGAAGCATATGAATTGCAGAATGCCAGGATGGGAGCGA
TAGCGTATAATAAGGCCACATGGTAATATCGGATCTGCGGGAAGATGCGTGGAACAAAGA
TTGCTGAGATAGCTGCGAAGAGGATGTAGCCAGCAACCGAGACATAGCCCGGCAGTCCTT
CATTCAGAAAGATCTTGTTCCTGCGACGCTCATCGTAGCTAAGAGATTTTTGTTCATCTG
GATTTCCATTGGCTGGTATGTTGGTACCGCCGGGACTCCGTTGTTGGCGATTCTTGTGGA
AGTGGTTGGCAGCCCCTATGGTGATTGAACCCAGTTGGAACAGGCAATCCCCAAGCACCA
TCGATATGCCCATGGGCACCTGTTTTCATGGAAGCAGCAAACATGGTCTGTCAGCGTAGT
GCGAAGACTGAAACATCTGATCAAGTACGAACCAAAGTAAAGTTCAGACGGAATTCTGTC
ACTAACCTTGTATCCATTGATTCCCCTGAAATTTGTCGGCGAAGGATCGTTGTACCAGGT
CCCTTTCTTGCTCTGGAGGGTTGGCCACAGGATGAAGGAGGTAATGGTAGACCCGAAAAG
CATGGAGAAGTTGATGAGGACAGGGCAGATCATGCCCACGCCGACAAGACTTGCGGAGAA
ATCGAAGTAAAACCTCTGCTTGTATGCCTTCAATCCGAACATAGGAAAATCTTGGAAGCC
GCAGCCACTTCCTCCCGTGTAAACCCACTGGAAGGATGCCCACATGAAGCTCCCAACAAT
GGCTTTGGACATGGCAAGCACCTGCAATCTATGGAGGGGAGGGGAGGGGAGGGGAGGGGA
GAAAACAATAGTGCCGGTTAAGCTTACAGATGGCATGGTGAAGAACCAACAGGTTACAAA
TGCTGTAGTATTTACTTTGCTGTCGCGGCTCCCGCTGGTGTGTGGAAACTGTTGACGATT
CCGGCGATAGCTGAACCAGATGGATACATCAGTTTGTAGTCCAGTATCATGAGCTGCCAA
ACAATGGCGAAATGTCTCAGTTTTTTTTGTAGCAAAGACATGGATCAAAATAGTGATCGG
AAATTGGCTCAACCTTCCGCAATGGGAGGGTGCAGAACAAGCTGGCGAAGGTGACGAGGC
CGAGGAAGGCCACCACGTTCCCGGTGTGCAGCGTGTACACGTCCTTGCTGGTGCCGGTGC
CGCCGGCGGACTTGGCCACCGTCTCGGTCATCGCCAGCAGGTAGGTCGTGAAACCACCTG
CAAATGCAAAGTCACGACCGCCAGCCGAGCAAAAATCCTGGTGGGGATGGCCGTGGCCGT
GTGCGTGCGCGGCTGGCTGCAACTGCATGGACGGGCGGACGTGCGGTACCGTAGAAGGAG
AGGGTGGAGCAGGAGATGATGCAGGTCTGGAGGACGACGTTCTCCTGCCTGGTGAAGGGC
TGGGACGCGACGCCGCAGCGGGCCATCAGCCGCGTCCACGACTTGATCACGAAGAAGCCG
AGGAGGCTGGCCACGATGTTGAACGTCGGCCCGACGCCCGCCGTCAGCCCGATCCGCATC
GACATGAAGCTCAGCACGGCCCCCAGCACCGCGCTCACGACCACCGACCGCGCCGTGACC
TGCCGCCACCACGGCGGCGGCGGCTGGCCTGCGAACGCCACCTCAACGGATGGCTCCTCG
TCGCCATCCTGTCCGGCGGCAACGTTTGCTGCAGTTTCTGCCTCCGACGACCGTGGATGC
TCACCGGCTACGGCAGCCATGTTTGCCTGAGGCCTTGCCTCAGCCGCTAGTTTCGTTTCG
AGCACGTTCGCCAAAAGTGTTGGCCTTGCTAAGCCTTGCCTTTTTTTAACTGTCACCAAC
ATAAGCGTTGCTTTTTATAGCCGTAACATGTCTGGAACAGCACAAGATTGTTGTTTTATA
TACCAGATCTCAACGAAAAACCAAAACCTGTTCTGAGCACGGCAGTATAACACCAGCACA
ATGTCACGGCAATTCATTCCATTTGATCTCTAAAACTCAGCGCAACATGGCGCCACACTG
AGCTTGTTCCATTACAACAGCAATACAAGCAGTGCCAAGAGGAATCACAATCCAGTAGAT
ACATGGAAAGCTCAGTTTGATCCATCGAACATTCTAGCTCAAGTGATACAATCTTGATCT
TATCTACTACCACCATAAGAAATAAACAAGCTTACCAAAGGCTTGATAATATTCATTCAT
AATGCTTCGTTTTTATGGCGGGAAAAGGCACGGAAACTTCAACAATTACTCAGCCACGTT
AACCAGCTCGTACTCTACTTGCGACAAGTTGTTCTCTTCATTCACAGTAAAGCTGGCAGG
TTCTGTAGCTTCTACCCTCCCCCACTTGTCCACGGCAAGCCTCATCGAAGCTTTGAACAT
GTCAATTTTAGCATTGCGCAAGATGGCTGTAGCACCAGCCTTCAACAGGTCAACTGCATA
GGAAGAGCATGTCATCAGTCCATAGTACATGCATCATGAAATAGAATACGAATCATGACC
CCATCCCCTATACTCTACAATGACCATGAGCAACTACGAAGATGCATAAGATCTGAAAAA
ATGACATGAGGACAGGATTCCTAGCATGCATCACATCAAAAGGTAGTAGTGCTACTGCTG
CTTATAACAGCCATTGCGTTGTGAGTTCTGAGCATGCAATTAATTAACAGATGAAAGAAG
TGAAGCTATTAGGATGCTTTTCTCTGTGATGTATGGACAAAGAAATTTGTACTATCAATA
TTGTATGTCAGACTATGGTTTCCAGTTAAAGACATGGAGACAGGAAGATCTAGTATCGAA
AATATTGTCAGATGTACTTCACGCATGTATGGTGAAATAATAGCTCAAGTGGACACTAAA
AAGAATGCATCACCTGCAGATATAGTACCCTCATTTGGATTCAAATAAACAATAGCACAA
TACAAGATTGGAAGAGAATGCTGTGCTGTTTCGGAAATTGGAAAAACAATATCAGGTCCA
AGTCGATCCAACTGTGCAGATGGCCACTGGCAGCAGAACTGTAGAATGGCAGGTAATGGT
AGTGAACACCTTTTGTTTGGTGTGCAGCTTTTTTTACTCAATTATACATCACTTAATTTT
GTTATTTTGTTTTCACAATTAGTTCAGAACAAAACCTAATTAATTTTATATACAGGCCAA
CAAAAACTGGTTTATTTTCAGGATAGATGCTTCCTTCATGTGTGTAAATTTTTAATAAGC
TATAATTACTAGGCAGATGCTGATCCAAGCACTTTGTGGCAATGGGCCTGGCGGTTGTCT
CAGGTTGTGCAGGATGCGCTCACTGGGAACCCATAATCTGATTTGCATCGCTGGAAAATT
GTAGGGGCTGTTTGGATCATGGCCGATAAAAAGTTGGCGTTGACAGACTATATGGGTGAA
CCTTTAGATTGAAGCCCAGCTTCCGTTGCCATGCCAATATTTTGGTCGTCCAGTTCAGAT
TTGACGCCCACAGGTGGGCGGAACGCGGGCGGCCGATTCGTCCACCAAATTTTTGGCTCG
CCCTGATTTGGCATGGCCATCGTGGGCGTAATCCAAACGGCCCTGTAGTGCCTTCTACGT
AGAAAGGGACTTTTCCTTTCTGCTATTTTGGCATCTAAAATTTACTACCTCCGTTCCAAA
ATACTCCCTCCGTTCCTAAATNNNNNNCTTTTTAGAGTTTCCACTAGAATACTACATACG
ATGTATATAGACATACATTAGAGTATAGATTCACT