Contig Data
morexGenes
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Map Locations of contig_1572819 (6297 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1572819

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16230 3 2696 bp AK354087 Available Available None
MLOC_16231 1 764 bp None Available Available None





CDS Structure of MLOC_16230






CDS Structure of MLOC_16231






Contig Sequence (6297 bp)

>contig_1572819 6297 assembly3_WGSMorex_rbca.fasta
CAGCAGCGGGATGCCGATGCAATGCAGATGATGCGCTTGATGCGATGATGNNGCGACAAA
TAAAATAATCACACGGCAGCAACAGAATAAAAGGGGAATCTTCTGGAGCATCGGTCTCGG
GCGGTCACAGACTGCCTTGGAAAGATTGGCTTCTCCTCTTATCAAAAATGCATTGCTGCC
ATTTGAATGCTTGCATATGGAGTTTTTGGTGATCTCCTTGATGAGTATGTCTGAATAAGT
GAATCCACATGCCTCGAGTCCATGTATAGGTTTTGCAAAGCCGTCATAGTTGTGTTTGGG
TCCTAGTACTTGAGAGAGACAATTGTTGCTGATATAGCACGGTTGCTGGCAGTGAATGCT
AGCAGGGGGTTCCCGGGGATGCTTGGTAGCATAGACTGTATGCACTGGAAGTGAAAAAAT
GCCCTTCCTCTTGGCACAACTAGTATAAGGGCCATGTGCGAGCTTGCACTGCCACACTTG
AGGCCGTGGCTTCCCAAAATCTTTGGATTTGACACTCTTTCTTCGACATAGCCCGATCAC
ACAACGATATCAATGTGCTCCGGCGCTCTCCTATGTTTGCTAGGATGACAGAAGGCAATT
GCCCGGAGGTCAATGTTGAGGTCAATGGCCACCAATACACCAATGGATACTATCTAGCTC
ACGATATCTATCTGTAATGATCTATTCTTGTGAAGACAATCTCCAACCCTACAAAAGAGA
AGATAAAGAGATTATCCCAAGAGCAAGAGAGTGCTCGCAAAGATGTAGAGTGTGCTTTTA
GTGTTCTTCAATTTCGATGGGGCATCGTTCGGTATCTCGCCGGTACTTGCAGCACCAAAA
AGTTGTGGGAGGTGATGACACCCTGTGTGATCATGCACAACATGATAGTAGAGGATGAGC
GTCCAGAATATCTGTGTGATCAAGGGTTTCAGTTTCACCATGACAATGTTGTGCCTGAGC
ATGTTGAAGGGACAACCTTTGCACAGTTCGTCGAGTTTCATCATAAAATGTGTGATTGAA
AACTCACATGGAGCTGAAAAATGATTTGGTTGAGCATATGTGAATTCATGTCGCCAACCA
ATAGATGTATCGACAACATTTTCTTTTAGATGTATTTAAAACTATTTAATTTTTTATTTA
TCTTGTAAACTATAAGATATTTATTCAATTTAAACTTTTAAATGTATTTCAAACAAATGT
TTAGCTATATTTTAATTTATAACATATCTAATAAAAATTTAGAAAAACTACAAAAATGGA
TTGAGGCGTTAGACACACGATCGATCTAAATAAAAAAGATTGACATGTCGAGCCAAACAG
ATAAAACACGAAAAAAAAAAGCACACAATCAATATAAATGAAAAAGATTAACATGTCGAG
CCAAACAGGTAAAACACGGACAAAAAAACGCATCCGTTTGGACCGCTTGGTTGGAGTTGC
TCTTACTGCAGCCCCGTCGTGTCTGGACCGCTTGGTTGGGGTTGCTCTTACTGCAGCCCC
GTCGTGTCATGCCACAGGAAGAAGAAAAGGCGATCATGTCCCGTCAACGATAACCCATGG
CAAAAAATCACTGGTTCCTCTGTAGCACACCGCCACTCCCCCAGTCCCGCTCGCACACAG
ACGAGACACAGGTTTCACTCCGTCGAGGTCGATCGAGCGCGTGTGTGTATATATGCCACT
CGCGTCCCCTACTCCTCGCCGTACTCTCCACTCCGCACTGCGCGCTGCCCGCTCCGTGTG
TGTGTCCTCTCCTCTCCTCGCGCCTAGGTGTTTGAGCGGAGGGGCAAAAGGACGGAGACG
CGGGCGCCTCGCCTCCTCCCCGCGCCGTGCTTTGTCCGTTGCCGCGGCGCGACTAGCCGC
CGTCGTCTTCCCGGCCCCGCGGCGGACGCCCCGAGGTGAGTGGGCGGGCTCCAGCTCGTG
TTTTCTTTCTCGGCTTCCCCAGCTGTTCTTTGTCTCTTGCGTCGTCCCTTTGCTCCGCTC
TGCTCTGCTCTTGGCTCCTTCCCCGCAGCTCGTCTCGTCTCCGCAGACTCCTCTCATCAT
TTTGCGTGAGAGAGATAGATAGATAGATAAAATAAGCGGAAGAATAGAGAGGATTGTTGG
ATCTTTGTCTCTGGGCTGGACTGATTTAGCGAGCAGAGTTCGAGGCCTCGGTCTTAGTTT
CACCTCACGGACAGCGAGGAGCACACCGGCAGACCTGTGGCCACTGTTTCCGGCGCTCTC
TTCTCACGATCCTCTCCTCTCGTTTGCCCCCTTGCTGTTTCGTTTTGTTTCGTCGAAGAG
GCAAAGAAAAGTCCCGCTGTCAATTTTTTGTCCTGCTCGAGCTTTTTATCCAAAAGAGGA
CACGAGCGATGCCGGAGACAAAAAATCTCCATCGCTGACGTCACCTTCTTCTTCTTCAAC
AGTCGAAACTTAGCCCCACTCCTCCATGTTTTTGACTTGGTTTCGGCTCTTCTTCCTGTT
GTTGTTTTGGTTGTAGCGGCTCGCAGCAGGTTGGAACTGGAACCCAACTGAGGTAGAGAG
CATCACTCCATCAGTGGTGGTGATTCGATTCCGCGAGCAGCAGCAAGATGTTGGAGAAGA
AGGCCGGCGAGTTCAGCGGCGAGATGGTGATCGCCGAGTTCGAGCGGCTGACACGTGACG
CCGACATTGTGCAGCAGGAGACGCTGCGGCGGATCCTTGCCGAGAATGGCGCCACCGAGT
ACCTGCAGCGGCTGGGCCTCGCCGGCCGCACCGACCCCGCCAGCTTCAAGGAGTGCGTGC
CGCTCGCCACGCACGCCGACCTTGAGCCCTACATTGACCGCATCGTCGACGGCGACGCCA
CGCCCATCCTCACCGGCAAGCCCGTCACCTCCATCTCGCTAAGGTTGGTCGCTCCTTGCC
ACTTGCCAATCAAGGCTCCTACCCTACGGCTTAGCTCCTCTTTATACAAGCTCTCCTCAA
GGATTGATCATGGTGATGCTTCTTGGTGTTGCAGCTCCGGCACGACGCAGGGGAAGCGCA
AGTACCTGCTGTTCAACGAGGAGCTTGTCAAGTCCACGATGCAGATATACCGGACCTCCT
ACGCTTTCAGGAACAGGTACAGAGCAAATCCCGCCCAGATTTCGTTGGGTTAGTTTCTCG
CTTCTGGTGCCCGGCCTCGATCCGGGGAGTCGTCCTCCGCCATAATTCGCCTGTTTTCTC
AATCTATACATCTCACGTGAACCAACAGTATGGATCGATCTGTGAGTTGAAATGGAGTAA
TCAGTTGCATAACCAGTTAGAATTAAGTCTGTGATCGACGCGATAAGCCTAACGTACGAC
TGCAACCTCCCTTTCTTCCTCTTGTACCGACGGCCTGTCATTCTCGTTCTAGTTTTAGTG
AAGGTTTTTCGGTTGGTGACCTCCATTAACGAGGTGCTTATGCTGACCGCTTAACGGCAG
GGAGTTCCCCGTTGAGGACGGCAAGGCGCTGCAGTTCATCTACAGCAGCCGGCAGTTCAC
GACCAAGGGCGGGCTGACGGCCACGACGGCGACGACCAACGTGTACCGCAGCGAGGAGTT
CAAGGCGACGATGCGCGTGGTGCAGTCGCAGTGCTGCAGCCCCGACGAGGTAATCTTCGG
CGCCGACTTCGCGCAGTCGCTCTACTGCCACCTCCTCTGCGGCCTGCTCTCCGCCGGCCA
GGTGCAGATGGTGTCGGCCACCTTCGCGCACAGCGTCGTGGTCGCCTTCCAGACCTTCGA
GCGGGTGTGGGAGGAGCTCTGCGCGGACATCCGCCGCGGCGCCCTGTCGCCGACGCGCGT
CACCTCACCGGCCGTCCGGCAGGCCGTGTCGGCGCTCCTTGCCGGGCCGAACCCCGAGCT
CGCCGACGCCGTGGCGCGCAAGTGCGCCGGCCTGAGCAACTGGTACGGGGTGATCCCGGC
GCTGTGGCCCAACGCCAAGTACGTGTACGGCATCATGACGGGATCCATGGAGCACTACGT
GAAGAAGCTCCGGCACTACGCGGGGGGCCTCCCGCTGGTCGCCGCCGAGTACGGCGCGTC
CGAGGGGTGGATCGGCGCCAACGTGGAGCCGGCGGTGCCGCCGGAGTCCGCCACCTTCAC
CGTGCTCCCCGACATCGGCTACTTCGAGTTCATCCCCCTCAGGCCCGGCTGCACGGCCGC
CCCAGGCCCCAACGCGTGCTACGGCGAGTCGGAGCCCGTCGGCCTGACGGACGTCGTCGT
CGGCCAGCACTACGAGGTCGTCATGACCACATTCGCAGGTATGCACGCACCTTAATTCCT
TACCTCTTTCACGTACGTTCCATGGCATCCATGCATGAACTCGCCCAGGTGGTAGTATAG
GTGACTTGGCTAGGGGGGCATTGACTTGGCATGTCGCCCTCCAGTTCCAACTTCCAAACC
CTTTGTGCTGGGTGACCAGTCCTTCACTCAGGTCTTAACTTAACCAAGTGGAAGCTCCAC
TTTCCAAATGGCTAGCTTTTAGTCCCCTCAAAACAAAAAATGGCTAGCTTTTAGGTAGGA
GATAAGACGGTCACCGGCCGATGGATTCCTGTGGAAACGCACAGGGATTTTGAAGTGGAC
GTACCATTTCCTGCCGGGTTATTTAGCCAGTCCAGTGGATCAAATTGGTCGCCAAATGAG
CCGTCAGATGAACCAGACCCCGGTTGGTTGCGACATACGAGTACATTGTCGAGCATCCTT
GGGGGGATATGGATTCTCTCCTCTCTCATCGCACCCACCCAGTGAAGCAAAGTCGAACAC
AGTGCTACTGCGCTGTCACGACGCTTCACGAAGCAGAAGATGGCGTCTACGGTGGGCATT
AGTTGTGGCGTTACTGTCACGTATATAGTAGCTTGTGATCGACGATCTATGTGAAAGTTA
CACGGTCGAGTATACATTAACTACACACACATCTTATCTTCATGAACATATTTAAAAGGC
TAAACCGACATATCATCTAGAAATTTACATAGTCATAGTAGGCATCTCGTCATCGACGAA
AACATCTTCTTTCACTGAATGTCCATTGCCGAAGATCCTAAAATAAATTCAAAAATAAAT
ACGAGCACCAAAATTAAAACCCTCATGAGCTAGGGATAGCAGAGTGACACTAACCATTCA
ACCATAGATTGATTTGCGAGTATACACTAATTTTGTTGACTAGTACGTTAATCAACACGG
GTGATGCAAGTCCTTTTCTCCGGGAAAAACAAAGAGGTGATGAGAGTCCGAAGACTTTTC
AGCATTATTGTCTGAAATGAATACTACTCCCTCCGTTCCTAAATATAAGACCGTGTAGAG
ATTACACTATGAACTACATACNGATGTATGTAGACATATTTTAAAGTAAAGATTCATTCA
TTTTGCTCCGTATATAGTCTATAGTAAAATCTCTATAAGGTTTTATATTTAAGAACGGAG
GGAGTATTATCATTCAACACATCGAGCCAAAAACCAAGAGTACAAGCGCTCATTGTTTTT
ACAAAGACCAAAATATAGCCCTGGCCAAGACACGACTTGGCACTCGATGTTCCAATTAAT
CTTACTTTCGGCCATCATTGATGCATAGGGCCCATATTCTGTCGCCGTAAGTCCAAACAA
AAGAAACAAACCTAGATAGTGTAGCGTGTGAATTAATAAGACATGGGTTTGACTAAGAAA
AATACTCTATTATTAGCATATATGGATTGTATGTGTTATCTAATTACAACTATAACTACT
TAATTTTCAACGCGAATCTTATGTGCATCATTTTTTTATGTCGCAACTTACGTACCAATG
AAGTAATGATTGATTTTAATTAGTTATTAAGGAATCAAGATGCGTCAAAATCTAACACGT
TGGAACTTATGTATTTTTTCCATATATTAGGTGTTGAACCAATGGACCAGTAATAACATA
TATGCGACGTCTGTCCCTTTGCTTTTGTTCATTCATGCCCGTGAGAAGGCAAAGGTCATA
CATTAAAATTGCCCAACCTTTATAAAACAGTCCTTACTATGGCATAAGATGAAATATATG
TCCTTTGATATGTCGACACCACCTTCCTCCTGCACTCATCGATAACGGCCCACGAGCAAA
ACTCGATGTCACCTTTTAATCTCTAGAACACCTATGATGCCAGCATAACATTGTTGACGC
GGCGAAGAAAAGTTGTCGATCGGAGTCAGGAGAAGCCAATGATCAACGGGGAGCTATGTG
CATTATTGGGGTGGCCGTGCCCCCCCCCCCCAGCCTTGAGATAATCATTGAAAACAATAA
TATTTTAGGGTCTTAAATACAAGGAAGCGTAGTAATTAGCCCCCCCCCCCCCCCCCC