morexGenes - Barley RNA-seq Database

Contig contig_157281
Source Contig contig_157281
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_157281 (6493 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_157281

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16227	1	1173 bp	MLOC_16227.1	Available	Available	LOC_Os10g28640.1, FRAME:+2, EVALUE:9e-140, 13110.m02443 protein RIO1 family protein, expressed
CDS Structure of MLOC_16227

Contig Sequence (6493 bp)

>contig_157281 6493 assembly3_WGSMorex_rbca.fasta
TACGGGTATAATTTTTGCAGCGAATCTTTTTTTCCTTTTGCGTTGCAGATAAATGATGGA
GCGCGGATTGAATAATAAAAATTACAGGGTTTTTTATTTTATAAAAATGCTTCGGTGGGT
TTTCCGACGGAAGCAATAGCCTCTTTATTATTAGGGGTATAAATATTAGGTAAAGATAAA
GATAAAGATATAGATTTGTGTGAAATCCACTTTTGTTTCCGCACTCACCCAAAGGCCATA
TCGGCCCGGTGAACCCCAAACACTGATCTCCTCACAATTTGCTACGGGGTACCGGCCCAG
TTACTCACCTACCCCTAAAAAAAAGCGTGCTTCTGTTCCTAACCCCGCCGCCGCCGCCCT
CCTCCTCCGTCAGCCTCGCCCCGGAGCAGCGCGTCATTGGCGGCGGAGGCCGTGTAAACC
CATAAAGGTCAGTTCACCACGACCCACCACTCCCTCCTCCTCTCTGCTCCAGACCAAGTC
TTGACCGTATTGGGTTGGGGGTTCACCGGGCCCGTGATGGCGACGGCGACGAGGAGATCA
GTAACGGCCCTTAGCCTGAGCCAGAGCGCCCTCGCGCCAAGCTTGATGCCTGGCCGCCGC
CGAATCCTCCGCGCTCTGTGCTCCGGCGCGTGGCAGGAGGGGGAGTCCGAGGCGGCGCTG
CGCGACGTCGTGTGCTTCGGCTCCGGGAGCCTGGACGAGGTGGGGAGCAGGCTGGATCGC
CTGAGCCTGGCCATATCGCCCGCCCTGGTGAGGAGGGTGGTCGACTCGTGTAGCGAGAGT
AGTGATTCGGGCAGGAGGCTGCTGCGGTTCCTGTCATGGTGCCGCTCCAAGATCCCCGCC
GGATTGGGGGATGAGGAGCACGACAGGGCGATTGCGGTGCTTGCACGGATGGGTGACCTC
ACGGCAATGAAAATTGCTGTCGGAGACGGGGAGAAGGATGGGAGGAGGATGGCCCCGGAG
ACGTTCACCACTGTGGTCGAGGCTCTTGTCAAGGCAGGGAAGGAGGATGAGGCTGTTAGG
TTGTTCAGAGGCTTGGAGAGGCAGAAATTGCTGCCCCAGAAAGTATCGGGTGCTGGAGGG
GAAGGCATATGGTGCAGCAGCCTTGCCATGGTCCAGACATTGTGCATGAAGGGCTATGCC
CGCGAGGCACAGGGTGTTGTGTGGCACCACAAGAGCGAGCTCTCAGCTGAGCCCATGGTC
AGCATCGTTCAGCGTAGCCTCCTGCACGGATGGTGCGTCCATGGAAATGCAAAGGAAGCT
CGGAGAGTCCTTGATGATATCAAGTCCTCAGGCTGCCCATTGGGGTTGCCGTCGTTCAAC
GATTTTCTAAACTGCGTGTGCCATAGAAACCTCAAGTTTAATCCTTCTGCGCTTGTTTCT
GAGGCCATGGATATCTTAGCTGAGATGAGGTCCTATGGTGTCACCCCTGATTCGTCCAGC
TTCAACATCTTACTGTCTTGTTTGGGACGAGCAAGAAGAGTGAAAGAAGCATACAGAATC
CTCTATTTGATGAGGGAAGGAGAAGAAGGGTGCTCACCTGACTGGGTTAGCTACTATCTT
GTAGTTAAGGTCCTCTATTTGACTGATAGAATTATCAGAGGGAAAAGGCTTGTAGAAGAT
ATGCTTGAAAGTGGGGTGCTTCCGACAGCAAAGTTTTTCCATGGCCTCATTGGCATCCTT
TGTGGAACAGAGAAAGTCGATCATGCTCTTGACATGTTCAAAATTATGAAGAGTTGTGAG
TTAGTGGACACTCATACATATGATCTGCTTATAGAGAAGCTTTCTAGGAATGGTAGATTC
GAGGTTGCAAAGGAGTTATGGGATGATGCTACTAAGAATGACATTCTGTTAGACTGCTCA
GAGGATCTGTTGGATCCCCTGAAGACAGAAGTATTCAGACCAGTTCGTCCTGCACAAAGA
CAGACCTCTCGGAACTGTAAGAGCTTGATCCGAACTAAGAAGGGTACTGCGGCTGGAGCA
ATAAATAAGTAGGATACTCTGTCCCAGGACAAAGCAGGTAGTCTATGTACTATGGGACTA
GTCAACTTATCGGAGCATATTTGCTTCTAACCTTTGGTTTGGAACTATGTGATGATGACC
CTTGTTTTAGATGCTACTTAGTAAACTCAGTTAATCAGTTGTCAAATCTTTCCTGAAACT
TGCATGTAATTACCCTATTTTATATGGAGTCCGTTCCATGACTACTGTTTTAATAAAGTC
AAGTGAACTTACTATAATTCAGTGAAGCTGTTACTTTTGCTTTTAGTATTTTATTGCCAT
TCTGCCCATGATAGTAGTTTGCAAAAATGACTGGCACTCTGGCAGTATTGTATAGCAACT
GTCCTCCGCATGTCGAAGTTCTCTACCATAACGTATACAGTTATGATTAGTTTTTTTTTG
TTTGCTGACTTTTCCCCCTTATCTTTATTGTCATTGTTACAGTTCTGTTTTAAGCGCACA
TTGAACTTTATGGACATATCTCAGGAGCAACAACAAGATTTTGGTGTGCTACTAAAGCAG
GGGGCTGAAGGAGTGAGTCAAAACTCCAGACTTACATAGTTTCAGTTTCTCCCTTACCTG
TTTTCAATAGTTTGTTTGCTTGTTTGCAGAGGGTATTTGTTTCCACATTTGTTGGACGAA
AATGCGTAATCAAAGAGCGCTTTTCAAAGAAGTACCGACACCCATTGCTGGACTCAAAGC
TGACTCTAAAGCGCTTAAATGCTGTCAGTCTCCTTAACCTATGTGCTTTTCTTTTGAGAT
AATCTACCCCTCCCAGTTTTTTTTACGTTAAGATTAGTTGTACAAACATTCTTTCAAAGA
TGGATAGTATTGCTACCAAATTTCTTTCTTATTTTGTTTATCAAGCAGCAAAGAGTTTCA
TATGCTTTTAAGGATAGAATTATAACTATTGTACAGTTCCATATCGAAAGAAAATGATAG
AATCATAGAGTGATATGTAGTCACGTGTTAGGTTGTAACATGTACAAATGATAGTAAAAC
TCGGCTTACCTCGGTATACCTTCCATCTGTAGGAAGCTAGATGCATGACAAAAGCAAGAC
GGCTTGGTGTACCTACACCAGTTCTGTATGCTGTGGACCCTCTTCCACATACATTAACCT
TTGAGTATGTGGATGGCTTGTGCGTCAAAGATATTCTTATTGGATTTGGGTCAAATGGGA
TAAATGAAGAACGTCTTAATGACATTGCCACACAGATAGGGAATGCAGTTGGCAAACTAC
ACGACGGAGGTCTTGTTCATGGTGATTTGACAACTTCAAATATGATGATCAAGAGCAGCA
CCAATCAACTGGTGCACACAATATTCTTTGTTTTCCCCCTGTTTTAGTTCATCTATTTTC
TGTGTTAACTTAAAAGTGCATCTGGTTATCAATTTACCATGTTATATTTCATTTTGCAGG
TGCTTATTGATTTTGGTCTGAGCTTTACATCAACTATTCCCGAGGACAAGGCAGTGGACC
TATATGTTCTTGAGAGAGCCTTGATTTCAATGCATTCTTCATGTGGTGATGTGGTAAGCG
AATTGTGTAAATCATGTACTCCCTCCGATCCATATTACTTGTCTTAGATTTGTGTAGATA
CGGATGTATCTAACACTAGGATATTTTCTGTCTTTGTTTACTCCAAGTCATGACTCTTAC
CATATCAATGGTATCCTAAATGTGTCCAAAAACAATAAATTACATTTTTGTGGAGCAAAA
GGTATATAGGGGGGCATTTTTGCAAGTAGCCCCTCCATATATAATTGTATATATTTTTGC
ACATGGTGTAGCCATTTAAAAAAAAATCACCATTCATGCTATTTATTCTAGAGTCCAGGG
GTCTCAAGCAGAAAACAGTACCCAGAATACAGTCTGGTGGAGCATGAGCCCGCACCTTAG
ACAAATCATTATTCACACTGCACCTTACACAAATCATTATTCACTCCCTCTCTTACTATT
CTTTGAAGTCCATTCGAGTGCGCAGCAACTCTTTCACCTCCTGAACGATTGGCCCAGAGG
CTGACAAGTTCTTTGTAGGATCATTAGCATACTTATCACAGCCTTGCAATGCATCTCGAC
ATGAAGTTTCAGAATGTTCATCTCCATTGCAAGCTTGACAGCACGCCGGCACATGAGAAG
TTCAGCAACCTCGGGGTTGGAAACCAAAGGGAAGACATGGCAGGCACCCTGTCTGAATAG
CCATCATGATCCCTGAAGACCATGCCACCAGCCCCTTTGTCCCCAGCTTTTGACATTGCA
CCATCCACATCGGCTTTCATCCACCCGATCTCAGGTGGTCGCCATCTTTCCGCCGTCGCC
TGATGCATTTTCCTCTCCTTGTTTCCATGGACCGACCTCCAGTCCTGCATGATGAGGACA
TCAACACCGAGAAAGACAGGGACAACTTCACCTCTATCACTCCATATGGGCTATCACTGA
GTCTGCTATCACATGTGCATCTGCGATCTTCTTGCCTTCATGCCTATCATTCTTTGTTAG
CCAGAGTGCCCTGCACCATTGTGCCTCTTTCCTCTTCTGAAGCGTCAGCAAACCACAATG
GCAGCCATCTAGATAGTGCGCTCTGAGAGCCTGTCAAAACCGGCGGGATCGCCACCGGAG
CTCCCAATTCCGAGTGCATGAATTTCTAGAGCAGTGCTGAGGACATTCCCAAAACCTATG
GTACATCATTTCCTCCTTACCACATGCAGCACAAAACACACCCACCTTGATACGTTGATG
GAGGAGTTCGGCTCCAACAGCTAGCCCATTGCGCATTAGTCACCAAGTATGAATTTTGCT
TTATTTGGAAACCCTGTGTCTCAAAGGGCAAGCCACTCCTTGTGGCCGGCGGCTGTCGAG
GAAGATTCCGGCCATCCAGTCTTAACATGGTTCTTTGCTATGCACAGGTGGTAGGCTGAC
TTGACAGTAAACTGTCCATTTTTTAAACACTTATAATACTATATTCTATAAAAATATATG
ATGGTAAAAACATGAAAAATCACCATAATGGAAGTATGTATATATTACGACCGACATATT
AGCATTACTTTCAGTAGGTCAACTAGTACGCAGGTCGCCTCCTGTAGACCATGCAGTGTC
CAAAACGACATACATATACAGAGACCACAAGGTTAAATTAATCTGTCAGGATTGTTATTC
TGCGATTGTTAGTACACCTACTCCAGTTATCTTGAGGAAATATTCATGTCTTGTATGTGA
CTTCCTAGCCGGTTTTCACACCCTGCCTTAGAAGAATGGTGTTCCAAAATAACATGGATT
TTGACAAATCAGAATATATTAGCAGTTAGTCCGATGCCATTGGACTTTCCGTGCGTGACA
TGGACTGCCTTTACTACCGTTCCAGTTTTGTGGATAACAGACACCCATTTTTGCTTTGAA
TTAGATGGAGAAGATCCTCGCAGCGTACCGAAAAGCTTCAAGGCAGTGGTGCGCCACTAC
GAACAAGCTAGCTCAAGGTACGATACCTGGTCATGGCCCTTCTGCAAAGTATGATGTCCA
TTTGATGTCTTGTGTTAACCTAACCCCTTGGCTTGTTTCTGTTCTTCGCATGGATTTTTT
TCAGTCAGGCAACGGGGCAGAAAGCGAACAATGGTCGGGTAAAACTTGACCCGGAGTTAC
TGAATGCTACAAATTTGAACCTGCAACACCATCCATTGTGTTAGTTTGCACTCATAGCGA
CTCAGCGGAATTGGCTCTTGTAGAATTGAAATGGACGTCAAGTGAATCATTTGTAAAAGT
ACTTGTTGTACTTCCGTTAGGAATCATATACTGTATCTCCTAACTCTTTAACTCTACTTT
GTTGGATGGTCGTTTTGTATTGAGAGAGGCATGCGGTGAAATGTGAATCGAAGCAATTTA
TTAAAATTATTACAACTAGCGTGTTCTCTGCATTAGCATAAGTTTAAACGAAACTCAGAA
CTCTGTACTGCCAGATCACTATGCGCCAAGCTATGACCGCATCACGTTTACGCAAGAGAA
AAAAATCAGCATCACTTCAAATATCTTTTAGGATTAGCAAATCACTTCATCAATTTTTTT
CTAGGCAAATCACTTCATCAATTGTTTTTTTTAGGCAAATCAATTCATCTATTGGTAAAA
GCTTAAAGGTTACATGACTGGCATTGAGGTCCACAACCACTGTTTCTACTTTCTAGTGGA
GCCCGAAACTACTGGTGTCTGGGAGAAAGACCCAATTCAGGATACTTCACTAATCCGGCG
GCCCATGTGAGGTCACAGGGAGCCAACTCACCGTTCTCGCATGAGATCAAAGATCATAAG
AACTCATTTATTTTCTACACTTTTATTCATGAGTTTAGGGTGTGTTTGGTTTGAGGACCG
AAAGTCATGGAATGTCATGGTTCCGTCCCGAAGTCATGGGTTGGTTCCATCCTTGTGTTC
AGTTGATGATAAAAAAAGTCATGGGTTGGTTCCGTCCCGGTGTTTAGTTGGAGAGATGAA
ATGAGAAGAATCT