morexGenes - Barley RNA-seq Database

Contig contig_1572700
Source Contig contig_1572700
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1572700 (6350 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_1572700

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16197	4	1093 bp	MLOC_16197.1	Available	Available	LOC_Os04g44770.1, FRAME:-2, EVALUE:2e-30, 13104.m04476 protein expressed protein
CDS Structure of MLOC_16197

Contig Sequence (6350 bp)

>contig_1572700 6350 assembly3_WGSMorex_rbca.fasta
GAGGTGTTGCTTGCCACGCGGCAATCCGATGGCACTGGAGTGTGCTAGAATTCCCCGGTT
CGGTCCCCGACGGAAGGGCCATCTCCAGCTGGTCTAGCAGCAACACACTACAACTTTCGT
TGATCCGATGTTGCTCGCATTTTTTCTCTTGTTTTTCTCTTGTGTTTCTTTTGGGCGTGA
TTGTGTTGTCGCCCCAGCACCTATTGGCTATATCGGTTGGTTGCTTTATAATACAAAGTG
TGGGGAACCCTTTCTTCAAAAAAAAACAAAAAAAAAACTGCTCAATGGTCGACACGAGTT
TACAGACAGCCAAGGCCTCCATTGTTGCACAATTTCACAAGATTTGACAAATCACAAAGA
GAGGATAAGAACCACTGGAATGCGTCACAATCGCACGAATACCTCGAGATAGAGGATGCT
AGTGGGTAATTAAGATTAACAAGTACTTCTACCATCCTTGCATTCCATTTGAAGGGTCAA
AGGATTGCATGATGTGCATTAGAAGCATCACAGAAGGGGGGAGCAGCTACAAGCATTGTG
TTTCAAAACTCGTTGTTCCTGTAACGGTATGCTCTTGGCTCCTGATGACCCTTGCTGGTT
GACCGGAATTTGAGGATCTTGTGAACGCTCGCGAGATGTTTCACCTCCTTGGGTGGTGCT
TCCTTGATGTTTCTGCCTTGCTTGTCCTTGTTTTCTCTGGGAGGTGTCGGCTCTTCATGA
ACGGGTTTTGGTGGAGCATCTGAGAAGGAAGGAACACATTTAAAACAGCGAAAGAACCCA
CTGTAAAAAGACTCACTAGGGTGAGCGGAAGGAGTAGCAAGGTTCCTCGTGAATGGCAAT
GTTACCATGCCTTCTCGACAAGTTAGATAAAAACATAGTACTATGTGTGAACAAGGTCAT
CTCACACGAAACAAGAATGGAAATCTTAAGAAAACAGCATCATCGTATTCACAGGGTATT
AGTTAATGTACGAAAGGGTATTAGTTAATGTACGAAACTTGATCATGAGATTGAACAGGA
CGTGTGAAATGTTTGCTGCAAACAAAGGGGCTGCAGAGGGATGCAAACACATACCGTTTT
CTGAATATAAATAGCATGTGCCAACCGTTTCTTCGTATTCTCCAATCTGCCATTAAACAA
GGCATCAGCTACGAGCTCACTCAGGAACTAGGTTAATAATAACCAGAAGCCCTAAAGTAC
AGGTTCCAATATTTTAAACAGCAGGAAAAAAAAAGGAAGGAAAACCAATGAAACTGACTG
GTACAGGTAACATCAGCTAAAGCAGTGCTTGTTATTACTAAAGCTCTCACAAATAATTAT
GGAGTTCATGTGAACCTTAGTTCCATCTATTATTCACTATAACAGACACAAAGAACATAT
CACAAAATTTTCTCAATAACTTCTCCAGACAGCCTCCTATTATGAAAAAGTTTTAACAAA
TCTGTATAAATGGGTATATTCGGATATCGTTCTAAAATTTAACCCCAAGTAAAGTTCCTT
TTCGGAGACGATCAAACTGTATTCAATAATTAAACAAATTACATCAGCTCCCAAAGTAAA
GTTCTAACAATGATACATTAGTTGTACATTCAAACAGTTCTAACGGATCTACACCCCTAG
TAATAAATTCACTCCCATGTCTCAATTCTCAAAGGTATAGTTTATTATAGATGGCAACCA
TATAAAACATCAGTCCCAAAAGTTCAATAAGATAAACTTCAAATAACCATAGAATAGTGC
CCCTTAACTTCCTGCCAAGAAAAGAATAATGCCCCTTAACTTGGCAAGTAAACGTCTTCA
AAAAAGAACATAACATGAATAATACTCCCTCCATTCCTATATATAAGTCTTTTTAGAGGT
TTCCACTACGGACAACATTCGGATGTATATAGACATACTTTAGAGTGTAGATACATTCAT
TCTGCTCCGTATGTAGTCTTTAGTGGAATCTCTTAAAAGACNTATATTTAGGAACGGAGG
GGGTACTCACCATCTTCAGGCTATCACCTACTACCAAGGTAGGAGTCAATGTATCCAAAC
CCTGAAAAAGAAGATTACAAATAACTTAGCGAACTACACCTTAAGACTGTAAGAAAAATT
ATACAGGTAGCTTATATAAGCCAACAATATAATCACTAAACGCATAATACTACCCAGATT
TTCGCCGTGAATCTACAAAACAGGCATAGACACAACCTCAACAGGAATTTGTATCTGCTG
ACGGAATCCATTGACTATGGCAACCTAAAAACAAATCTGAAGGAAAGTTACTCCAAACAC
AAGAAACATATATAGCCCTTTCATGTACGAAGTGGCACATACTAATGGCAAGAACTCTCT
TAGATGATCAGCACGTAACCTACTGCTTCATCTTAGTGCAAACAATAAAATAATTTGCTC
TGGGGCTCTATTGGCCATTTAAACATTTCTGATATAATCAAATCTAAAGTGAACTCTTTC
TTGATATATATCAATAACACAGAGATGGCAAAAGTGCTTAAGGAAAATTTAGAGACACCA
TATCTTCTTAATAACATTTACAACTGAGCCTAATGTCCTTTTGTACCAGTAAGCTGCAGA
CTGGGAGATGAAACCAACTTACAGAGAGTATATAAGGGGCATTTGGTTGTATGCAGGAAT
AATGAACATCATCCAACTCTAGCAAGACATACTCTTCTTCTTCCTCCTCCTCCTCAGCAA
TTTGTTTATCTTTCTCAGTTTCATTTGCCATCCCCAGCAAGAATTTGCACTTATACAGTA
GTAAATCCTGCACTTCACCAACCAGAGTTCAGAAGCAAGAACTGAATGCACAAGATACAA
CTATCCAGGAAATATTTGCAGTAGGCGAAATACACAACTAGCATTGCCTGGCAAAAAAAA
GTAAGTCCTTTCAGTCCCTTTGTATTTTTTGCTAAACAGATAGCAAATTAGTTACAAGTT
ACCAAAGATCGGGACTACAACGGTGCAATCAACGGTACAACAATTGTGACAGAAAGAACA
CCAGTTTCCAGAATAACGGTACTGAACATCAGCGGCTGAACGAAGACAGTCTCCAAAGTA
ATAGAATATACAGGAACAAAAGAAAGAGAAAGAATGAAGCCTTACCTTGTGGTGGCGGTG
GCGGTGGAGGCGTGGGTGGTGGCCGCCGCCGCTTCACAGATGAAGGGAGACGTCGGGAAG
GGGGCTGGGCGGTGATGCGGCGTCAGTTGAGGCCTTGAGGGGCGTGTAGGGGGGCTTGGA
GGTGGCGCGGTTCTAGACGGAGAAGCGCGTCGGCGCAGACGGCGAGCGGCGGGTCCTCGG
AGAGCGGCGGCGGCAGAGCCCACGGCACGAACTAGAGTCGCAGGATGCAGTGGCTGCGCT
GGGATGGGCCTGGATTGGCGCACTGGGCCTGGCTATGTACTTTTAGGTAAGTCGTCTTTT
GACACCTGAAACGGGCACCTTTTCTCATAAAAAAAATGGGAAACGTTAGGGTTCGATTGC
AGTAGATCTAGCTTTTTCACATTCTTTTCTTAATTTTTTACCTTCTATTCTTCTTCCTCC
TCCTCCTTCCTTCCTCCGGCGACCTCAGGCGTTGCCAGCGAGCGTCACATCTTCTTCGAC
GCTCTGGCGAGGACTCCACCAACGCGCCCCTCTCTCGCCTGATGAAACTTCACACGCGGC
CCATGCGCCTGACGACGGTGAGCGACGAAACCACGAGATATGATGCAAACGGGGACGATA
GAGTGCTACCACGGTGACATCCATGTGCTGCAACCCCACGACGACCGGGGGTGCGTGACG
GCGATGACCGAGGTGACCACAGGCTGCAACCACAACTTTTTCGTTGCCGGTAGCCGGTTG
AAGTTGTTTTATATACGGTTGAAGCTTTTTTGTGTCAATGTTTGTAGCTTTTTTCCTGGT
TGCAGTGTTTGATTGGAGCTTTTTTCTTAACGGTTGAAGCTTTTATATATACGGTTGAAA
CTTTTAGCACATACGATTGAATCTTTCTCTGTCAACGTTTGCAGCTTTTTTCCTGGTTCA
GTGTTTGATGAAAGCTTTTTTCTTAACGGTTGAAGCTTTTATATACACAGTTGAAACTTT
TTGCATCCACGCTTGAAGCTTTTCTTAAAATGTTTGAAACTTTTTCCGTTTTTGAGTAGC
GCTTGATTAAAGCTCTCTGTGTCATCTCATTAAAACTTTTTTCATCTAAGGTTAAAACAT
TTTGTGTCAACGGTTGTATCTTTCCCTGATTCGCAGTGCTGGTTGAAGCTTTTTTTCATC
TAGGGTTGAAGCTTTTTTCCAAATATGAGATATGTGAATGCAAGAAACAACATATGAAGG
ACCGTCCGGACGCGTCCGTGGACGTATAAGAGGTCGAATTTGGTCGGTTGTACATACTCT
TATCCTGAACGACCAGAATCTAGGTGGTAGTAATGCCGGTTTCTGGAGGCGCCGGCGGCC
CGGAGAGATATACATGTGTTCACACAAGTGCGTAGTACATTCGTTTCACGTGGCACCACT
CATGGAAGGTCTTGTATCCACCTCTCGGAGCGCATTCATTAAGACGCGAAGCATTCATGA
CAACTTCATGTATGTTCAAAACTTGGCGCGGAGATTGCATAAATGCAGAATGCCTGCCCT
TCTTTTCAAGCTTGACATCAAGAAGGATTTTGATTCGATCAAGTGGAGTTACATCCTTGA
TCTTCTGCAACGCATGGGTTTTCCTACCAAGTTTTGTGCTTGGATCGCTGCTCTTCTATT
GACGTCTTCATCTCGCATCCTTCTTAGTGGACTGCTCGACCCACCAATCAAGCACGAGCA
AGGTTTCCGGCAGGGGACCCCATTTCCCCCCTCTTATTTATCATCGCTATTGACCCACTG
CATCAAGTTCTCAACTTGGAAACACGGAAAGGACTGCTACACAAGATTTGTGGGCGGGGG
GGCACGGTGCGAACCTCTCTCTACGCGGACGACGTGACAATCTTTGTGGCCCCTATCAGG
AAGGACATCAACAACCTTGCCTCGATCTTGAAAGGTTTCGGCGAGGTCACGGGCCTCTGT
ACGAACTTCCAGAAAAGTTCGGTCGTGCCAATTTGGTGCAACCACCTTAATCTTGGGTAC
ATTCTAAGAAGCTTCTCGGGTACATTGACGACCTTCCCAGTAAAATACGTAGGCCTGCCA
CTCTCGATGGGGCGGCTTAAGATGGTGGATTTCAATATCTTGAGGACAAGGCGGTGGGAG
AATTGGTTACTTGGAAGGGGCAAAACATCACAACCATCGGTCGCACAAGCGTCGTCAAGT
CGGTCCTATCATCCCAAGCGATGTGCTCCATCACGCCTCTCATCATTCCGCCGGGCACTC
TTCGTAACTTAAACAAGATTGAAAGAGCTTTTCTCTGGTCAGGTGAGGACAAGACGACGA
GTGCCAAGTGAAAGGTTAATTGGGACACGGTTTGCACGCCGAAAGAGTATGGTGGCCTCG
GCGTGCTTAATTCCGACAATTTTGCGCGTGCTCTACGGCTAAGATGGCCTTGGTGTGAGT
GGAAGGATCCCCACAAATTATGGGTCGGTTTGGGTAACCCCTGCATGAAGGAGGATCTTG
ACTTCTTCTATGCTTCAACTACCATCACCGTGGGGGACGGAGCCAAAACGCCTTTTTGGG
ACTCCCCTTGGCTGCTTGGGCGCAAGCCCAAGGAGATTGCACCACTAATTTTTTAGGCTT
CGAGGAGGAAGAACTGGAAGGTCAGGGAGGCCCTAAAGGGAATGCTTGGATTTTCAAAAT
CAACCACAACACTGTCGTCATCGGCCAGCACATACGTGAATTTCTCACTCTCTGGATGCT
CCTCTATGATTTCCATCTCGATGAACACCTCGCTGATGATATTGTCTTGAAGCACTCAAC
CAACAGGCTCTACACGGCTGCTACCGCCTACAAGGCTCAGTTTCTTGGGCTAACTCTTTC
GTCCATGGATCGCATGGTTTGGAAAGTTTGGGCTCCTTTGAAGGTAATTTTGTTTTGCGT
GGTTGGTCATCCAAGATAGGATTTGGACCGCCGATCGCCTGTAAAGGCGGGAATGAACAA
ACTGTGGCCTCTACTCGGTTTGCAAGAGGGCACGAGAGACAGGTGCGCACCTATTTTTCA
AGTGCCGCTACACGCTTAGCCTTTGAAGGTCTATCATTGTCAAGTTTGGCCTTGCGCACA
TGAACACATCGGATTGGCGCCTTGACGACTCTGTCCACGTTTGGTGGGATAAGAGGACAG
GCACCAACGTCCCCAATCGGAGTGGTATCACTAGTGGAGAAAGGGGTATTAGAACCGGTT
GGTAAGGGCCTTTGGACCCGGATACACATCCGGTGCTACGTATCCGGGAC