| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
 |
Predicted Genes from contig_1572609
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_16173 |
3 |
3816 bp |
MLOC_16173.1 |
Available |
Available |
LOC_Os07g32430.1, FRAME:-1, EVALUE:0.0, 13107.m03288 protein pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed |
CDS Structure of MLOC_16173
Contig Sequence (5586 bp)
>contig_1572609 5586 assembly3_WGSMorex_rbca.fasta
GTCATATATTTCGGGACGGAGGGAGTGGAAGCTAGGAATAAATACAATGCACCTTAAACC
TTGTCTTTTGTGGAAATGCACCTAAATTTAACTATGCCTTCTAAACCGTGACGGAGGTAG
TAACATAAGTGCTATTTTGCCAATGAAAAATAAGTGACAGGTTGCGGTTTGACTAATGAA
AAAGGATTGACAACCAACGGAAGTGTTATTTTGCCAATGAAAACAGAGAAGGAGTTCATT
TTTTATAGTAGTACTTTGACAAGTTTGGTTTCTGGTAGTGGTATTTTGGCTACTGTCTCG
TTGTATGACTAAGGACAGGTGTGGTATTTTGGCTACTGTCTCATTGTATGACTAAGGACA
GGTGCATCCCCCCCACATAATGCAATCGCTCATACATCACTGCATACTGCCGAGGGCAGA
CTATATCAGCACACACAAACATACTCATTCAACATTCCTACCTACAAAAACATCCTCCTT
TTGGGCCTCAGATACGTCAAACCTTTCTTCAGGCCCGGCATAGCAACCTGCTGCTGCTGC
TGCTGCTGCTTGCCCCTCTTCTCCTCCCTCAACTTCTCTCTGCCTGCCGCCTCAGCTTGC
TCCTGCCTCAACCTCTCCATCTCCTCTTCCATGGCCGTCTTCTCCTCATTATGCCACCTC
CCGCGGTCGAGTAAGGAGGTGTCGCTGTCCTTCACAGAGAAGAACATGGGGCCCAACTCC
GCCAGCCATTGCGGCTCAACTGCACTGACACACTGCATATAGTCCTTGGTTGTCAGGACA
AGCTCGTGGTACACGATGTAGTCAGGGGTGTAGCCGAGACCGTAGAGGGCGCTGCTGGGA
TGCAGGTGGCACGGCACCCCATTCCGGCAATTGATATACTCTCCAACACCCTTCAACCTT
GCAGAGTTCTGGAAGTACGCTGAGCAGATGGCCTTCCTCACCACGTCCCATTCCATATGG
CATGATGTCAGTGGGATCTTCAAGGTCTTCAGTATGTCCAGCAGTTGAGATCTCACTTCC
CGAGCCTTTTGAAGACCTTTGACATGGAGGAAGTGATCATTGCACCAGTCTCCCCTATAC
TGGTTCAATTCCCATTGCAGGTATACATTGAGGAGTGTCAGATGGTCAGACTCTGGGACA
AAGAACTTCTCCCTTGCAGCGTCACTCTCCTCCTCTCGATCTTTTGGACGGAAGAATGCT
GATGGCACTGAGAGCATGGATACAATTGTCAGTACTTCATCGATGCACCCCAGCTCGTTC
CCCATGAGAAGCATCTTTGCTAAAGTTGGGTCCAATGGGAACTCCACCATCTTCCAGCCT
AGATTTGTAAGGCCACCAACATTGTTCAAGGCGCCCAGCAGCCAGAGCTGGTACATGGAG
TTGAGGATATTCTCCTGGGGGGGTGGGTCCATGAAGTCGAAATTGAGCAGGTTTTCGACT
TTGAGGGATTTCAGTAAGAGAACCACGTTCGAAAGGTTGGTCCTTTGGATCTCTGGCACA
GGGTTAGGGAGCATCTCATTCTGGTAAGCTGATTCGGTGAAGAGCCTGTAGCATGTGCCA
GGACCAGTTCTTCCTGCACGCCCTGCACGCTGGTCTGCAGCTGCTTGACTACATGGAAAA
ACCTGAAGAGCATCCATGCCCATCCGTGGATTGTATACCTTCATCTTTCCATACCCAGTA
TCGATGACATAGAAGATACCATCCACTGTCAGGGACGTCTCAGCGATGTTGGTAGCAACA
ATGCATTTGCGAGTGCCCTCTCCTGCTTTCTGAAAGATCTTGGCCTGCAAGTCAGCAGGC
AACTGCGAATAGATGGGCAAGATTGAGAGCTTCGGTACAGCCTTGGTGGATGAAGATATT
AGCTGCTCCATGCGCTCAGCAAGCGCATGGCAAGCAGACTCAATCTCCTCCTGCCCGGTC
ATGAAGATGAGGATGTCACCAGGGCCACTTGTTATGTGGATTGCAATGGCCTGCTTCACT
GCCGCTTCCACATAGTCTTCACATGGCATTTTGTTGAACAAGATATTTACTGGAAATGTC
CTTCCAGGTATGTGAAATACGGGCGCGCCACCAAAGAATTTTGAGAATTTATCTGCATTT
AGTGTTGCAGATGTGACAATTAGCTTAAAATCCCGTCGACGTGCAGCAACCTTCTTCAAT
ATACCAAACAGAACATCAGTGTTCAATGATCTCTCATGTGCTTCATCCATGATGATAACC
CGATATTTGTCCAGGTCAGAATCCTTCAAGGTTTCACGGAGAAGCACTCCGTCTGTCATG
TACTTAATTTTTGTGTTAGGGCACGTGACATCCTCGAACCGAATGGCATATCCAACTTCA
TCTCCAAGAACAGTCTCCATTTCTTCGCTGACACGCTGAGCAACACTCATGGCAGCCACA
CGTCTTGGTTGAGTGCAGCCAACAAGGCCAGTTCTGGTGTATCCATCCTCATGCAGATAC
TGAGTCGGCTGGGTAGTCTTCCCAGAGCCAGTTTCACCAATGACCACAACCACTTGATTT
TCCCGCACAACTCCTAGCAGGTCATCCCGGACAGTGTATATGGGGAGATATTGCCTTTGT
TGAGAAAGAGATTTTGATTTTGCGAAATCACTGACAGCTTCTGCCTTTTCCTTCAAGTGT
TGTGAAAATTTCAGCTTATGTTTGAAGTCAACATCACCTTGGTCACCAACAACTGCAGTA
TCAGCATCAATCTGCTCGGCGGTTTTCTCAACACCCAGAATACGTCCTAGCTTAGATCCG
GCAAGCTCCCAGAAGCGTTGTCTTGACTTGTTCATACTCTTCTTTTCACGAAATTCCCTA
ACTAAAAGAGAACCCTTGCGTGCAATAATAGCCATGTCTGATGTTGGGTCCTTGAGTGGC
ATTACAGGCTCTGCTTGCTTTGTGAACACAACTCGTCCATCAAGGAATGGGGGTCTCGTG
TCATGAACAAGCAGTATAACTCGACGCTCATCCTCATCATCAAATTCCATCTGCACCTCT
GTTCTTCTAACAGCTCCAGATCTGAACAACTGCCTGTTCTCCCACTGAGCATTCTCAGCG
GTTATCTGTGACAACTTTTTGCTCTGAGCAAGAGTCATCAGACTTCCATCTTGGCGAGTC
AGCTTCTTGGCCAATTTTGTTTTCTTGTTTTGAAAGGAACCATCATCTCCTAGATAATTA
CCAGCGTTGGATATAGTGCTGTGTTCTTCGCAGTCATACCATGTGCGGTCAGCATTGTAA
TCCATCTCTTGCATCATCTCCTCAGTGATCTTATAATTTCTGTCAGCTGTTGAGGGCCTT
GTCCCAGCTTCAGTGTCCTTGCATGAGCAAGAAGGACCTTTTGAGGAGCCAGAAGGGTGT
ACAGGGGCAGGAAAAGAATATGCATTATCCCAAGGGGATGCTGCAGAGCGTGGTGTAGTG
TCACCCAGCCAAGGAGACAGTAATGGTGCATCAGGGGATGCTGCAGCCAGCATAGGAGAT
CGTGCCGGATGTTGCCATCGGGAGCCACGTCGATCGTAGCAGTACTCCTGACGAGGTGTA
TCATCCCACTCCCATCGACGACAACCAGCTGGATGCTCGTGCCTACTTCTCTTGTTGGGG
GTGAATGCAGCCTCCACTTCCTTGTTGGGACGAGGCATGACCACGCTGCTGCCTTGTGAT
TCTCGTTTCCTCTTCGCAAGGACGTCCAAACCTACAGCGGAGCTCCTTGATCGACGCGGG
TAGGTGACCCTATCCTGCTGTTTCCGCAAGATCAGACCACCCTGCATCGCGCTACTGCTA
TCCTCCTGCCCTAGGACAGTCACCATCCTCATCGCGCCCGCCTGAGGAGGCGCTGGGGGC
ATAATGCAGTGCATTTTCTTCCTGGAAATGAACTGCTGTCAGATCTGAGACCGGTTTGGA
AGAAGAGGGATTCGATTGTTCTCGGCAGCGAAAACAACCGAACAAATGAATCCAAGCAAG
CTAGGGCTTTCTCACCACCAAACAAAGTCAATCGCGTCCGGGACGGCCGATAGGAGGAGC
GCGAAGACGAGTTGCCCCTGCGAACGCGGGCGAAACGGCTCCGGCGAAGACGGCGATGGC
GACGGCGATGGCGACGGCGACGGCGACGGCGACGGATTTCGCGAGCTGGGATTGATTTTG
GTGGGTTGGGGTTGGGGAGGGAGGGGGGGTTATTTGGGCCGGCTTGGCTGTAGCGTTACC
GACTCGAACTCTTTATCGGAGCAGTTTCTTTTTCCATTTCGCACTCGGTAAGGTCTGAGT
TTGTCTTAAAGAAAAAAAATCGGTAAGGTCCGAGGCTTTTCTTTTCTCCCACATAATAAT
TATTAAAATATTGGTGTTTTTTTTAGGACAGTACTCTACGTAGCGCGCCGACGTTAGGTT
TGGTCGGTCGGCCCCGAGCCTTCCGATATTTCCTTGTTTTAGTCGTCTGATCGAGCTTTC
CCACGCGTTCTTTTTTCCTCCTCGCGCAAAAATCTTGTAGTGTCTCATCGCCCTTCCTCC
CCTGGCCTCCTGCTTGCAGCTCCGCCCACTGACTCGTTGTCGCCGCTCGCCGGAGCAGCT
CGTTCGGCGCTTGCCGGAGCGTCTCGTCGGCGTGGCGGGTTGCCCCGTATGGCTCTTGTC
GGTCGCCAGTCCTCGTCGCCCCTTCCTCCCCCGCAATGGATGAGCTCTCCGCGGCCCTTG
AAGCTCGCCGCCGCTCGCCATGGAGCGGTTGAAAGAGGGGATGCAGCTCAGCATGTCGTC
GGTTGTAGCAAAATGAAACATCGATTGTAGCGAAAATCGCGATGTCGTGTACGATGTAGC
AAAATGCGACATCGATGATAGAAAAATGCGGTGTCGTCTGTAGCAAATTTCGATGTTGGT
TGAAGCATGTAGCAAAATTACGTCTTCGGCCATGGACGCAACTTCGCCGGTCATGGCGCA
GTTAAGAGAGGGATACAGCTCGCCATGTCATCAGTGGTAGCAAAATGAAACACCAGTTAT
AGCAAAAATCACGACGCCATGTGCGATGTAGCAAAATGCGACACCGGTGATAGCAAAATG
CGGTGCCGATTGTAGCAAATTTCGACATCAGTTGTAACAAAAATGATGATGACCGTGGTG
CCCGTGGTGACCATGCAGCTTCACCGGACCGTCGTTGCATCTCTCCTAGACGCATAGGCT
GGGCGGCAAGCGCCGACGACGGCGAGCTCGCATAGGTTGGTGCAGACACGAGGGGAGGTT
CCACATGGCCATGGCTCCCGATGTTGTGGGAATGACCGTGACAGTAGAGGAGTAGGCTGG
TGCAGGCGCGAGGGGAGGTTCCTCGTACTAATACGTCTACTAGTAAGCATGCACGTGCAA
CGCACGAATAACCGTACATAAAAAATTCCTTGTTCATAATTAGCAAAAAAATCATACATC
CAAGGCAATGAACATGGTGAATTTCTTCGTAAAGAACATATGAGATATTTATTGTATGTA
TATTCCCTCCGTTCCTAAATATAAGTCTTTTTAAAGAATTCTATGCACTACATACGGATG
CATATACACATGTTTTAGAGCGTAGATTCACTCACTTTGACCTATATGTGATTTATATTA
GAAATT
