Contig Data
morexGenes
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Map Locations of contig_1572546 (5891 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1572546

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16151 3 1472 bp MLOC_16151.2 Available Available LOC_Os01g16146.1, FRAME:-2, EVALUE:5e-143, 13101.m01794 protein phenazine biosynthesis protein, putative, expressed





CDS Structure of MLOC_16151






Contig Sequence (5891 bp)

>contig_1572546 5891 assembly3_WGSMorex_rbca.fasta
TACGTAGATCTAATCTCCACTCGTAATGGACATCACCATGATAGGTCGTTGTGTGCGTAG
GAAATTTTTTGTTNNNCATGCGACGTTCCCCAACAGCTCTCATGTTTGCATCTACTCGGT
CAATGGACACAACTACTCGATGGGTTACTACCTTGCGGATGACATCTATCCACAATGGGC
CACCTTGGTCAAAATAATTCCTCGTCCAAAAGGTAACAAAAACATTCACTTTGCCCAATG
TCAAGAAGCTCCTAGGAAAGACGTTGAGATAGCCTTCGGTGCGCTTCAGAAGTGCTTTAC
AATTGTTTGTGGCCGTGACAAGTACTGGAGCTCCAAGGTTCTATGGCGGATCATGACTTG
TTGCATTATATTGCATAACATGATCATTGAAGGCGAGAGGGATATGCGTGAGAACTTTCG
GTACACCACCAACGGGACTCCAATTGAGCCAGAGTATGATACGAACAGGACCATGGCATA
CCTTGAGGAGCATCGCAAGATCGAGAACCGTCAAGTTCATATTCAGCTCCAACAAGATCT
TATTCAGCATCAGTGGCAACGTCTAAGCGAGTCCTAATTGTTCTATCACATGCTATTTGC
TATATTTGGACCATTAGACGTGTTTAAATTTGAATAATTCAGTTTGTAAGCTTCAAATTC
TGTTTATAAACTATATTCATGATTTGGTTGAACATTCAAATTTATGCTTAATTTGTAGAT
GTGTGCTAATATGTAGTTGTGATATACTAGAATTGCAAGGCTTAGAAAAATGGCCTTATC
GAGCTAGGTCAGGTCAAAACTTAGTGGAGTAAATATACTCCATTAAGCTTTTACTTTACC
GAATACTTCATTATTTTTAAAGAATCGGTTAGAAATGGCTTTATCGAGCCTTGATTCTCA
AAAATGCAGTTAATGTCACCCATCCAGGTTTCGCGTGTCACGGCCTAATGAATATATTTT
TCATGAAAATAAACTTGCAACCTAAAATTCTTAATCGCAACTCACTCCAAGCTATATTGT
TACAGTTGGATTCGAGCACTTGCTACCATGCAGCTCCACCTTGTTTTGCCTGACATTGTT
CAGATAATCCATTTTATTCCATAAACTGGTGCATCGATTGTTAGACCAGCGCATAGCAGC
AAATATATTTATTTCTACAAAGTCTTCTTTAATAGGGCAAGTCCGTGAAGTGTCAATATG
CTAGCTAGGCGAAGAGTGTCCCAGCCATGACAGTAACAGCTTCGCCCTGAATCCGCACTC
GCCGATTCTCAACATCCAGCTCCAGGTATAGTGTCCCGCTCCTTGGAGATACCTGACGAT
GAGATGAACAGAAAAAAAAAATGAAAATTGACACGATAGTTTGGTTGATTGAGCGCTAAC
TTTAGCATTTCCTTTTTCAGAAAAAAAAAGGAATCACTGTAGTAAATGATAGTTCACTCA
GCAACATTACCTGAAACGCTACCAGTTTTTGTTTCCCCAGCTTTCCACCCCAATAGGGTG
CCAAAACACAGTGTGCACTGCCACATACCGGATCCTACAGAAATATTGGGAACGGGTTAC
GCGGTACCCGTCAACGAGCAAGTTAAACGAGCTTCACTATTTATATGTATTCATTACCTC
ATCAATCCCAAATTTTGGGCAGAAAAAACGTGTGAAGAAGTCATAGCCCGATCCAGCAGG
CGCCGGTGCTGTAACAATCACGCCTCTGCCGGCACACTTTCTAATTTCTTCGATGTTTGG
AAGGACGTCGGCAACCTCTTTTCCTGATGAAAGTTCAACCTGGAAGCCATGCGAGATTCT
TTTGGTGAGTCAGACTCAGACCAGTAATCCATGTTTCTTATTTGTCACTTTAGTTCTGTA
CCTTTAACTAAGTTGCATGCAGTTTACAGTTAATTTGAGCATTCTTATATCATGCCGATG
GAGAGCCAGATGATTTTTATTGAACAATGTTTCTGTGATAAACTGATAAGTGCTGCTTAA
GTGAGCAATAGTTCATCAGCCACCAAGAAAGAGTTGTTCATCCTAGTATAATTGTTATAC
TCACTCCATAGTAAAGTTGTACTAAAACAGTGACAATTAATATGGTTCGAAGATAATAGT
AGCACCAACACAATTCTTTACCTCAATTTGTTTCTGAGTTAGAAATACTCCGAAATATAG
GTCGTTGGAGTAGCTGAATTACAGTTGCTTCAACGACATATATTTCGAGTAGTAATTTTT
TAAATCATGGTTATGCACGCAAAAAAAAAAAAAACAACGCGTGAGGTAAGAGACAATACA
ATGAAGTCGTTGGTGGTCACTGATTTATGAACACTGACGGCGGACGCGCCGTTGAGCATC
TCCGGGATGGACGGCAGCTCGTCGGCGGGATCGCAACCCACATAGTCAATCATGGGGAAG
TCCAGCTCAATGAACAGCTTCTCCTGCTCCTCCTCAGTCTCTGGTGCAGGAACCTTCTTG
GCGGTCAGGACGCCGGACTTGGTGGCGAACTCGACCACGCCATGGCTCTCCGCGAGGACG
GACGTGAAGAGGAAGTGGGCGGTGGCCAGCGTCGCGTGCCCGCAGAGCGCGACCTGAGAA
CGACGGCGCATATGGATCAGTTGCGAGGAACGACGCTGATTCAGCGGGTGTCTGTCAGGC
GGGAAGCTAGGCGGCGACCTCCGTGACGGGGCTGAACCAGCGGAGGTGGAACCGCGGCGT
GGCGGCGTCGGCCGCGCGGGACGAGTCACGCGAAAAAAAGGCCGTCTGGGAGAGGTTGAA
CTCGACGGCGACGGACTGCATCCACCGTCCGTCCCCCGCGGGGGCGGCCGCGTCGTCCAC
CAGGAAGCATACCGCGGCCGGGTTGCCCTTGAACGGCTGGGCCGTGAAGGCATCCACCTG
CGACGAGACCACACATGAAGATCAGTTCCCATTCGAGCCAAGAAGAGGAAATGAAGGAGA
GGAGAAGAGATCACTGACCACGACATACTGGATTCCTTTCTTGGACATGGCCGCTAAAGA
GCAGAGCAGCTCCAAATCTGTCTGTGCCTGCTACTGCTAGTGATCTATCGGTACGGATGC
GCACGGGAGCACGTTCTCGTAGGACAGTAAGTACTAGTGCTAGTCAAATCAGCTGCTGAT
GATAATGGGAGTTGGTGCAGCAATAGTCATCAGTGACGATATGGAACTTGCAGGCCTCCT
TCCTCGCGAAACTAATTTACCCTGCTGGCCCAGGCAGGCATTTTGAGTCGCTGCCTGGTG
TAGTCCTCTTGTGTCGAGGCCACTGATAGGACTGCCACTCCAACTGATCAAGACCCGGCC
TGCCCCACGGCTCGGCCCATTCGACAACGACGGACCAACAGCAGGGTCCACGGGGCAGAG
TGTTTGCATTTTATGAAGAGGAGCAAAGCAAATCAAAGCAAAGACAAACAATTATTGTGC
TTTAAAACTGGATATGATGAAGGCCTATGACAGACTGAAGTAGCCACATCTAAGGGTCAT
GATGGAAGGCTAAGTTTTGCAAATCCATGGATTAACATAGTTATGCAAGTGATACAATCT
GTCTATTTTTCAGTTATGTTCAATGGAAAGAAATTGAAACAATTCTTTCCAACACGAGGT
ATCCGACAGGCAGATCGCATCTCCCTTTATCTTTTCTTAATTGCAACAGAGGGCCTCTCG
TGCCTCTTAAAAACTGGTTTTCAGTCGTCTGTTCTTGAAGGAATCAAGGTGGCGCCGACA
GCTCCAACTGTCAACCATCTCCTCTTTGCTGATGATAGCCTGTTGCTTTTCAAGTCATGT
ATGGAGGGAGCTACAAGGGTATCAAACCTATTGGAGTTATACTGTAATGCATTGGGCCAT
CGAATTAATCACATGAAATCTTCGATTTTCTTCAGCAAGGGGTGCCCTCAGAATATGAGG
GAGCCTATCAAGGGTATTTTGGCTGTGAACAACGAGTCCCTTAGTGATAGATATCTGGGT
CTGCCCACAGATGTTGGCCAGTTAAAAATGGGCACTTTCAAGTACCTACGAGACAGGGTG
TGGGAGAAAGTCAGGGGATGGATGCAAAACTTCTTTTAGTCGCTCGTAAAGAGGTTCTTA
TCGAGTTGGTTGCCCAATCTATTCCAGTATACTCTATGCCGTGTTTCAGGTTACCTCGTC
GCCTATGTGACAATATCACATCAATTATCACACAATTTTGGTGGGGGAGTAAGCAGGGGA
AGAGGAAACCAGCCTGGGTCTCTTGGGATGTGTTGACAAATCCAAAATAACTTGGTGGAA
TGTGTTTTAGGGACATGAAGATCTTCAACTTGGCACTGTTAGCACGTCAAGCCTGGAGAG
TCCTCGTTGAACCAAGTTCTCTTAGTGCAAGGATTTTGAAAGCAACCTACTTTCCAAACA
CAACTTTCCTTGAAGCGGAGCTGGGTAATCATCCTTCTCAGATTTGGAGATCGGTGGTGG
ACAGTAGGGAGATAAATGCAACAAGGGGTGATCAATAGAATTGGAACGGGAAGCTCGACC
AAGATCTAGGAATCTAACTGGCTTCCAAGGATGGGGCCGAAGCGCCCGATCACATCCCTC
ACAGCCAACCCACCACAACTAGTCTCGGAGCTCATTGATCATACTTCAGCTTCGTGGTGG
GAAGGTCGGGTTCGGGCGACCTTTATTCCGTTTGATGTAGACGTTATCCTCTCAATCCCA
CTCTGTACCCAGGCGGTTGAGGATTTTTGGGCTTGGTGAGAAGAGAGGACGGGCAGGTTC
ATTGTCCGCTCCGCATATCGCATGGTCATGAACAACACAAAGCATCGGGGAGATGAAAAT
GAAGGAGCATCGGATCTAGGCACCAATAGTACTGGATGGTTTGACCTATGGAAAACTAAG
GTACCTTCGAAGCTCAGAGTGTTCTTGTGGTGACTGGCTAGATATTCAATGGCAACGACG
GATCTGCTAAATCACCGCAACATGTCCACAAATCATCTATGCGCGCTATGTGGCCGTGAG
GACTCCTGGAGGCATGCTCTTTTGGACTGCACCATGTAAAGGTGCATCTCGGCTTTGTCT
GATGAAGTTTTGGTGGAGCATTTGTGTGTCAACACTGGTCATAATGCCAAGAATTGGCTT
CTTTCGATGCATGAGGGATTGTCATAGGAGCATTACACCCTCATGATGGTAACCTTATGA
ACTATATGGAGAGTACGACGAAAGGCAATCTATGAGGACATATTTCAGAGCCCGCAGTCC
ACTAACCAATTTATCAAACCTTATATTTCTGAACTCCAAGCTTTGGATGGACATCAGAGC
GGTCAGGTGAGACAAACGATACCCCGACCTGCTGGTTGGATACCACCGCTGGATGATCAT
TTCTAGATCAATGTGGACGCTGCGGTGGCCCAAAACTTAGGTCGCGGTGTTGCTGCAGCG
ATTTGTCGTGGGAAAGATGGATCTTTTCAGGGGGCATCGGTTGTATTCTTCAAGGGGATT
AGCGACCCACAAACTCTCGAAGCTCTAGCAGTCCCGGAGGCTTTAGCACTAGATGAAGAT
CTAAATTGTGAGAAGATCCACGTTGCATGTGATTGCAAGGTCATTACCGATGATATGAAG
CTCAAGAATCCGGCAAGATATGGAGAAAATCTACATGAAGTCATAGGCTGGAGTGTTTCG
TTTCCTTCTTGTAGTTTTGCTCATGAGTTTAGAAACTCGAATTTCGAGGCTCACAACTTA
GTGAAGCATGTCCTTAGACTAGGGGTTGGCCACTGAGGGAGTCCGGTGTTGGAAATATGC
CCTAGANNNNNNNNNNNNNNNNNNNNNATTATATTTCCTTGTTCATAAAAATCGTTTATT
ATCCATGCTAGAATTGTACTGATTAGAAACTCAAATGCATGTGTCGATACATAGACAACA
CGCTGTCCCTA