Map Locations of contig_157243 (7878 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_157243

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16119 1 516 bp AK376189 Not available Available None
MLOC_16118 7 2813 bp AK356612 Available Available None





CDS Structure of MLOC_16119






CDS Structure of MLOC_16118






Contig Sequence (7878 bp)

>contig_157243 7878 assembly3_WGSMorex_rbca.fasta
TGCAACTACATGACGATGCAACGAATAAAACTAAACACACGACGGAAACAGAATAAAGGN
NNNNNNNNNNNNNNNCGTCGGTCTCGGGCTGTCACAGAGGCGCTGGTATTTTGGAGCTTT
AGCACAACGACTTTTTGATTGTCTATTACAATAAGGTTTGTCCGGCTTCAATGAAGGAGA
GGTGATGACGACGACGTGCCTTTGGCTTGCTCGAGTACTTATAGCCGTCATTAGGTGGTC
TGTGGATATTGATGTAATCTTTTGAGGAGAAATATTTTTGTTAATTCCCGCGTTGTTTGT
AGTGCCATGATGTTTGATAAATAGATCCGAAGTCTTTGTGTTTTTAACAAAGCTCTGAGA
GCATCTACAGCCGGACCGGGCAAATCCGCTCAGTATACGTCTGCGGACACGTCCAGACAC
GCCCGTGAACGCATGCGAACGACCTCTCATAATTCACTCACCACATCCACATATCTCAAA
TTCGTTTTGGGCTCTCAAATCAATGCAAGACCATGCACGTCGATCACATAAGCCATTGTC
GCACGTAAATAACAAATATTGACACCGAACATAAATAGTTATTTACATAAAAAAATTAAG
TGCACAATCAGACATCAGCTCTTTGGTTTCCATTGTGGGTCCACATATGCTCCACAAGAT
CATTGAGTAGTTGCACGTTCACCTGATGATCTCAAAGGTTCTAATGCATATGCAGAAAGT
TCATAAACTGAGCTGCATCTTAATCTCCCGGGATTTCAACTTGTTCTTCACGTGCTTCAA
AATCATTGGTTTGGGCTACACCATTACCCTCATCCTCGACAATCATATTGTGCAAAGTAA
CCCAACATGTCATGAGCTCCACAAAAGTTTATGATTCCCACATCATTACAGCCCCATGAA
AAATTCCCCAACGAGCTTGAAGCACACCAAATGCTCTCATCGTTCCTAGATGCTTCCAGC
ATTATTGCAAAGTGGCTCCGTTTTTGGCCATGCAGTTAGAATATGGTCTTCACAGATGCC
GTCCACTGAGGGTAGATGCCATTGGCAAGATAGTATCTCATGTTGTAGTCTCTCCACTTG
ACGGTGTAGTTGCACGATGACGATTCCACGGTCCAAAGCCTCCTGAACACCAGAGATCGT
TAAAGCACGTTGATGTCATTGTGAGAATCTGACATTCTAAAAAAGCATGCCAAATCCATA
AGTCATGTGATGCCACCAATTCTAGTATGATGGTAGCCTCTTTGGTGTGACCTTGATACA
TTCCCTGCAAACTTTTGGGGCAGTTCTTCCATTGCCAATGTGTGCAATCAATTGATCCAA
GCATTTCTGGAAACCCTTTCGCCTCTCCAATAGCCAACAACTTGTGTGTGTCCTCCACAT
TTGGTTTTCTTAGATAATTTGCTCCAAACACCTCATTACAACACGGGCAAACTTGACAGT
AGTCTTCAGGCATGTGCTCTCCCCCATCCTGGCCATCTCACCAACGACATTTGTAGGAGT
GCCAAGTGTAAGCATTCTCAGACCAGCCGTGCACTTCCGCTTGGCATAGAAAGAGAGTTG
ACCGCAGCAATCCCTTGTGAGTTTGAAGTAGTCATCGTGTGCCTCTACTCCCTCCATAAT
GCGCAAACATTATGACTTTTCGCACGTGAAAATGGCGACGAAATCATGGATCATCCAAAA
AATTTTGGGTTCGAAGCTAAGCAGCCCTTCTGCAACAGCTTTGCTCAAGATACCCTGTCC
CGATTGATCACTCTTCTTCCTTTGATGAGCTCTCGAAATTAAGAATATGCTTCACTTGTC
GGTCCATTTCCTCTTGCATGCTCATGAGCATGATCATGTTCACTTCTTCATCTGAATCCG
AGGAATCAAAGAACTCATCTTGAATCATTTGATCAAGTTTCGTCGCTCCATACTCCCCGT
GGGTCGAAGTATCAAAATCCATTGTTTTCCCTAAAAAAATCACAAAAAATCAGGTGAGAC
AATGTGTCAAACACATTAAGCGCAAGGCGAAGCTATATAGTTACCGGACGTACCGCGGTG
GAATCCGGGTCGGCGATGACGTCCCCTGCGGCAAGAACGAGAGAGAAGACTACTCTGCTG
GAGCTGGCGGCGCACATGCTAGGAACGGCTACGGAGCGTGCGCAGCAACGGAGCTCCAAG
ATGGACAACGTAGAGGAGGAAGAAGAGAGAAGAGAGCAAATGGATCTGGCAGTTCTCGGG
GTGGATTTGATACAATTGCGATGGGGTCGGACTGTCGGGTCGCACGTGGCAGACGTGCTC
GGACGTCCCATATCCGTCTCATATTTAGACTGAGTATGAGGGTTGTCGGTTAGTTCGCAC
GGTCATCTAGATTAAAACTTCGTGACTGGTTAATGTTCCACGGTCGCCCATGCGTTTGAG
AAGGTTTATGATGCTAGATGCTCTAAGAGCAAGTACAATAGAGCTGAGTTAGCTGACTAT
AAGGAATAAACTAATATATTTTTGTTTAGTTAGAGGAAAGAGAAGAGGAGAGAGAAGGTA
AGAGCCAGCTCTAGCACGTGCTCCTAGTCATTTCGTGAGTATGAACGGTGGGCCATATAA
TAAAAAAGTAATATATCTTTGCAATGAACTATTGTACTTCCTCCGTTCCTAAATATAAGT
CTTTTAAGCGACTTCACTAAGGGACTACATACAAAACAAAATAAGTGAATCTACACTCTA
ANNNNNNNNNNNATACATCCGTATGTAGTCCTATAATGCAATCTCTAAAAAGACTTATAT
TATGGAACGGAGGGAGTACATGTTGACTATAAGATGGACTATAAATGACATGACAATGAC
TTATAGCCAGCAGCTGACTATACTATTCTGGTTGCTCTAACAGCGACGGGAAGACCAATA
ATACCCCTGGTCCAAAATCATCGAACCAAGAGAGAAGTCGGCTGTCACTCCCAGCCAGCC
CGTGCGCATCCTCTCCCGCGAACATACCCAGCGCCTGAGGCCTGACGACGGCGGACAAGG
CCGCCCCTCCCGCCGACGGCCAGGCGACAGCCGACCCGCCCGCCCTCCGCCGCGCCTCCC
CACCGATCTCCCCCATTCGGCACATCCCTGACCTCTGCCGCTCCACTCTCCCGGGACTTC
ACCCTGCTGCGGCCGCCGCCGCGCCCCCCGCGCCGACGCCCGGCCCTGCCCCAAGCTCCG
TCCCTCCGTCAGGTCTGCTGTCTTCTGGGGTCCTCTCCGCTGCTTCGCCATTCCACGAGA
CCTACAGCGACCTCTCCTCTCCACCATCTGTCCACCCCGTAACTTCCCCTCTCCCTCTCC
TGACCCCATCTTATGCTCGGGTCTGCTCGAGCTCCAGTCCGACCCAATGCGGCCATGAAA
TCCCTCCTGTAGTCGTGCTTCCTCCGTGCCGTATCTAGGCGTCATCGCTGACGCCTCATA
CCAAAAAAAAAAAACACCTCTGACGCGCGTCGCCGTCGTGGCCGTTCCCGTCCTCATCGC
GTCGCTGCTGTCCCCACCTCGTCCGCAACCTTGGTCCTTGCTTTTTGAGGTATGAGCTTC
TAATCATCCAGAAACTACTAAACCTCAAACCAACCTCGACAAATTTTGGGCGTGCCGATT
CACTTCCTGCACACCATGTAGATCCGCACCTGATTTGGATCCTGACTGCCCTTGGTTTCT
TTTCAGGTAGGATCCAGGGATCCATAAGCGAAGTCTTCCCGAGCTACGGAGGATGTGATT
GGAAGCAACTACGGTTTCATTCAGAAATGGCTACACCAGGGAGCAGTACTGGGGCTGGCG
GCAGCAGCACCAGACCGGCGAATCGCGCAGTTTTCGTCAATTCTGCTGCGGCGGCGGTCG
GTTCGGCCGACGCCAGATTCCACTCCCAACAACCACACCAGGATAGGGTATACTCGTGCG
CTCAATTACTTAAGCTTAGCTAGTCGTTTGTGCCTTTTTTGCTTTAGATGAGCACATCCA
TCAGACCATCACTACATACGAAGTACGAACTGTACCGGACACTAGCTGCTGCAACTTGCA
AGGGCATCTTTACCCCAATAATTATGCTTTAGTACTGGCTGCTTGCTTCATGCAGCTTTG
CATAATGAGCTGAATTGACTATTCATCTTGGTGTTGGTCCATGCTAAATTGCATGATTTT
GCACCAGTTTGGTAATTTTGTGAAGACCACATACATTGTCCTGCTACAGCATCACCTGGA
GTATCTTGCTCTTTCATTCCTTTCATAGATATTGCATTCCTTTCATAGATATTGTATATA
TCAGTATATAGGTATAGCTCGTCGATCTTTATATCCACATTTTGCTTAGAGTTGAGGTTT
GGGAAAAGTAGCTTTTCACTTTGGAAAGCACTGACTGTATGGTAGAAGCACAAACTCATT
TTGGTGTTTTCCATGATAGGATATTTTTCCTTCTGAAGTTTTTTCAGACTTCTTGTGGAC
TGCATGCTGTGACCAGTTAGGATCTTTTTCCTTCTGAAGATTTTTCAGACTCTTGTGAAA
TGTGTGCTGTAATCAGTTAAGATCTTTTTTCTTCTGAAGATTTTTCACTTTTTCTGACTC
TTGTGAGATACGAGCTGTGATGACTGATAACACAATTTATATGTTCTATGTGCGGCGGCA
TTTTGCGCTTGTGAATTTTGCTCTAATTTACTTGCATGGTTATTAATGATGCAATGTGTT
TTTTTTCCTTTATGTACAGAGTTTAATAGTCATCTGCAGTTTCATCATTGACCTAACTAC
TACATTGCGTTTTTAAACTTGTTCTTTGTTCAGCTGTGGAGTCAATTTTGTGTATCTTTT
ACCAATAATCAGCCGGATGGTTTTTATCTCTGCTTCCAGGAACAATCAAATTCATTTATT
TGCTCCCTAAACAAAATTCATTTATACTTGCACTAATGCATTACATGTTTCTCTGTTCTT
AACAGCAGAGTAGATGGGCTGGCTGTTTTTCTGGCTTGTCATGTTTTGGGTCGCAGAAGG
GTGGAAAGCGTATAGTTCCTGCAGCACGTATGCCTGATGGGAACGCGTCAACTAACCGCG
GAAATGCTCTTCAATCTGGTAGAAATTCTAACCAAAATGGGGCTATGAATTTATCTCTTC
TTGCGCCACCATCATCGCCTGCATCCTTCTCGAACTCTGCTCTTCCTTCGACTGCTCAGT
CACCTAACCGCTTCCTTTCAATATCTGCAAACTCTCCTGGTGGCCCAACGTCTAATATGT
TCGCTGTTGGACCATATGCCAATGAACCTCAACTTGTCTCACCTCCAACAGCTTTTTCAA
CTTTCACAACTGAGCCCTCTACAGCACCACTGACCCCTCCTCCTGAACTAGCTCATGCAA
CCACTCCGTCCTCTCCAGATGTTCCATATGCTCGGTTTCTTTCATCATATATGGGTCCTA
AAACTGCTGGCAAGGAGCACAACATGCATTACTTGTCAACAGCATACTCTGGTGGCTTAG
GACTGCAGGGATCTTATCCACTTTACCCAGGGAGCCCTTCTAGCAGCCTCATATCACCTG
CCTCAGTAACTCCAAGGACCGGTCTATCCTCACCAATCCCTGAACAAGATGTTCCTGCTG
CACACTGGAAGACATCTAGGTCCGTCTGTGACACACCATATTCCATTGCATCGCCCATTC
CTGAGCAAGAGGTCCCTACCGCACAGTGGAAGACTTCCAGATCTGCTTGTGACACACCGT
ATTCCAGGACATCACCATCAAATATCTTTGGACTTGATTCAGCTGCCCCTAGAAACTGTC
TGCTGGATAGCAATTTTTTCCGTCCAGCGGCATCTGCTCAGTTCTACCTGGATCAGGCTC
AACAGTCATTTCCGTATAATGGTGGAAGGCTTAGTGTCTCAAGGGATAAGCAAGATGCTG
ATGAGGTTGAAGCATACAGAGCATCATTTGGATTCAGTGCGGATGAGATTGTTACAACTC
AACATTATGTAGAAATACCAGACGCGCTGGATGATGGGTTCAGCATATCCCCATTTGGAA
ACAATGCCCCTGCTACTGAGGTGTCCCCATTTATTGATCTGCCTAATGAGGTTCAGAAAG
TTGATAAAATGGATAAATCACTCTTCAATGTCAACGAGACCACAAGCCCAAAGAAGTCGC
CAGACCAGCTTTCTGGTGGCAGTCCACAAAAAGTACTGCACGTGGATATATTCAAAGGTA
ATTTTTTTTCCTGACTTTTCACCGCGGCCATTCTGTTATATCTTGATTTACCACAATCAT
CATTTAGATCTCCGCGAACTATTGTGCAGACTAATTTATTCAGTAATTTGAAGTTTTGAA
CTATACAAGCACTCTGTAACCTCAACACAAATGTCTTTCATTAACATCCAGGTACACCCA
GATTTCTATTTGCACAATACCCTACTGATATCCTTAATCAACTTACCTCAGGATCGAAAG
CGGGGCATCTATCCGAGGATGACACAACCGTGAAAGATTGCCATCCTTTCAGGAAGGCGG
GAGATGAAATATCTCTAAAACCCATTGAGGTTAGGAAGAAATCTCCGCCTAGCCAGGCAT
GCTCAGACGCAGAAATTGAGTACAGAAGGGCGAGGAGTTTGAGAGAAGCCAACAGTGTTC
TGTCATGGCGAAGCTCACTGTCAAGACAGCTGCAGTAATGGTGCTCTAGGGTGCAGGATA
AGTTTCATAGTTCCCTTAGCCTAGTGTGCCTCGATTCGAGCCGAGCTGTTAGAAGAAAGC
CGTAACCGGAGAGTAGCCTGTACTACGAGATTAAAAAAGAGTAGCATCTACTACTCCTGC
TATATATATGGGGATTCGATTTATACAGCCAAATTGCTCTGGGTATGTTATGAACAGCTT
GTATTCTGCTCCCTGTTTAAGATTACCATGTTCCTCTTTTGTAGACACTCTCTAATGGTT
AGCTGGAGCAATGAAATGAAAGGGTGTGCAAGATTACTTTGAATTCTGATGCGAGAAGTG
ACCCAGAGTTTTCCAAGGGTTTTTGGAGTATTTTTCTGGTCCAATCACGCAGAATCCTCA
TGCTTCTCTCCCAAATGGTGTATTTACGGGAGCGTTCTTCTCTTGAAATATCTAAAAGTT
TGACATTGCAACGACTTGTTGGGCAGCGCGAATTCTGTGTGACAGTTGAGCTGCAGATTC
TAAAAAAGCTGCTGTGAAGAAACTGAAAGCTAAAAAATTGGATAACCCATCTTTAAAATT
TAAACTAAAAGAAGTTACAGATTCTTAAAAACTGCTTTAAACATTTACTCTTTTAATTAG
CTTTTAGCCTTTCAAAATAGAAATTCATAAAAAAAAACTGAACCAAACACATCCTAATTC
ATCGAAAGCTTACAACGCGAGGGACATTGGGATTCTGCCATTTTCTTTATTGGATCATGT
TTTACAATTGAGAATGAGCAGTTAAAATTAGTGGTCCAGTGACCCAGAGAACCACAACCA
CGTCTATACATGACCAAGCTAGAGGAGAGTACAACAAGTTGTGCAAGCAAGATCACGACT
TCACGAGGAGGGCACGCATGAGGCAGACACGAGAGCGCGCACGGAGTGTCCATGCACGTC
GCCGGCTGGCTTCGGTCGTCGCCGCGGAGCCTTGCGCACGCCGACAGCCGGTCGCCTGGT
TCAAGTGGTCCTGGATCCTCGCTACTGCGCCTGCGCCTGCGGGTTGTGCAGCTCCACCGC
GCACTGCGACTTGAAGAGCGGCGCCAGGGACGCCGGCTCCGGGACCGGCGACGGCATCGC
CGGGTGCCGCCACACCCCGCCCCCGTTGGAGGCAAGCGTCGGCGTCGGCGCCGGCATGGC
CGGGTGCCGCCACCCGCCCCCGCGGGCCGGGGTCGTGGCCGCCGCTGCTTGGACGTTGCT
GCACAGACCACCCGCGCG