Contig Data
morexGenes
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Map Locations of contig_1572316 (2056 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_1572316

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16079 1 267 bp MLOC_16079.1 Available Available LOC_Os01g72880.1, FRAME:+2, EVALUE:2e-31, 13101.m07948 protein DNA mismatch repair protein Mlh1, putative, expressed





CDS Structure of MLOC_16079






Contig Sequence (2056 bp)

>contig_1572316 2056 assembly3_WGSMorex_rbca.fasta
ATCGCTCTGTTGATGAAAATAGTACTTGCTTGCAGGTGAACACCGAGATACCGAAAGAAA
ATGCTGAGATGATTAACGAGTACTTCTCTATTCACATTGATCCAAAGGTGGCAACCTGAC
CAGACTTCCTGTTGTACTTGATCAGTACACCCCTAATAAGGATCGCCTTCTAGAGTTCAT
GTTAACTCTAGGAAATGATGTAGGTTTCCTTTTATTATGCTGTCGCGTTCATTACATATG
GTATTTTAAATTTGGTCATGATATTTGATTATCCATTCCCTGCTGAGGCAATGGCGAGTA
AGTTTTCAGGCTGCTACTGTATTCAAATTTTAATTTTGGTGTTTCATGTAGATATGGCAG
CTAGCTGTCCGGAAGTAACTTCTGTTTCTTATTTTATATTTTAAGTTGTTTCGGAATTTT
ATTTCCGGGAGTTGTTGCTTTATGACATATTTTGTTTTAGATTGTACTTTAGTTATGCAA
ACTGCCAGTTCTGATTTTTAGTGATTACTGAATAGATTACCTGGGAATTTGAGAAAGAGT
GCTTCAGAACGGCAGCAGCTGCTATTGGAAACTTCTATGCACCTCATCCTCCCATCCTTC
CAAATCCATCTAGCAAAGGCATCCAGTTTTAAAACAAAAATAAAGATTGCATGGAAAGTG
CTGAACAGGCTGGTACTACAGGTGAGCTTGTTGTTAATCCGTATCCTATAGTTCTATACC
ATTAAAGTGCCAAAGACCATGTATGCTTACTGTTACACCCTAGTAGTTAACTGAATCCAT
AGTTTCTACCACTTTACTACCCATTAACACTGAGATAACATGACACTAAAATCGACGTAC
GAAAGAAATATTCATTACAGATGATGCTACAGTAAATATTTGATGGAGCCAATTGCATTG
TATTATTCATTCAGAGTTAATTGCCATAGGGGCTAAATATGCATTTCATTACAGATGAAG
ACGATATCGATGAAGGAACACTTGCGGAAACAGAAGCAGCATGGGCTCAACGTGAGTGGA
CCATCCAGCACGTCTTGTTTCCATCCATGCAGCTTTTCCTTAAGCCTCCGAAGTCGATGG
TGGCAGATGGGGCGTTTGTTCAGGTTCTCTCCTAACGTTGGTTCAGTTCTGCTTTATGTT
CGATAATTATATGTGCTTCAGTCTTCTACTTATGTTCTGGACTTGTAAAATCTAGATTTT
TTTCTGAGAAAAAACAAAGACTTTGCCTTTCTTTTCATTGAAAAGGGGGATAAAAGTTAC
AGGCCTCCAAATGAGGTGGTTTACAGTTTTGTTACAATGATTTTAATTCAGAGGGGGTTC
CTTTGGGCTGGTTGTGCTGCTGCCAATGGAGGGCACTGCCACGTCAACTGACACCACGTC
TCCCGCCCGATAGAGTATGGTGGTCTGGGCGTTCGCGATCTTGAGCGCGCCAGGCTTGCG
CTCCAGCTGTGCTGGCTGTGGCTCGCACACGGTTCATGGCCGCGCCTGGCAAGGTCTGGA
CCTGCACCTCCGACGAGAACTATTCTTTGCGTCCATGGGCGTCCATTGGGAATGGCTCAG
CTGTCCGCTTCTGGGAAGACCGATGGCTGCATGGGCAGTCTCTCAGCGAGCTAGCATCCC
TACTCTACCTGTGTGTCCCCAAGTGGCGACGGAAATTGAGAACAGGGACAGAGTGAATTG
CTAATAAATGCATGGGCACGTGATATCCGAGGAGTCATCGGCCTCCACGAGATCGGCCAG
TACCTGTGTCTCTGGAAGGCCGTGCAGCACACCACCATACCGAACGAGCCAGACCGGCTT
TGCTGGAAGTGGACTGCAAATGGAAGCTACTCCGCGCAGTCCAGCTACTCGGCTACCTTT
CATGGCTTGACGCTTTGCTATTCCTAGAAGCTTGTCTGGAAGAGCTGGGCGCCACCGCAT
GTGAGATTTTTCCATTGGCTTGCCAACCAGGACTACTGCTGGACTGCCGATAGACTTGTT
CGCCGTGGACTGTGTTGAAATTAATGGTGGGCCTTAGGCCCATAAGAGAATTTCAGAAAA
TCTCCAAGGGCCCATG