Contig Data
morexGenes
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Map Locations of contig_1572309 (6259 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_1572309

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16077 4 1886 bp MLOC_16077.1 Available Available LOC_Os07g10030.1, FRAME:-1, EVALUE:4e-35, 13107.m01015 protein expressed protein





CDS Structure of MLOC_16077






Contig Sequence (6259 bp)

>contig_1572309 6259 assembly3_WGSMorex_rbca.fasta
TGAGCTCGGGTCGGCCTCCCGGCCCGTGAAACTANNNNNNNNNNNNNNNTTTTGTCGCGC
CCCGCAAAAATATTTACGGACCGGGACGGGATGCGAGGCTGATCGGGCAGGTTTTTCCAC
TCCGACCCACACTTTAACAGTTATTTTGTGAATCGGGACGAGATGCGGAGTCTGCTAGAG
TTGCTCTTATGCCTCCACAGCAACCTCCAGAGCAACAGAACCATTCTTAAGCGACGACCT
GAAAAGAAACCGACCTTATGTGGAGCCTGGTCTTACACTAATCAGCGCCACTGTTCAAGT
TCTATGGATCTTTATTATAGTCTGTACTGTAGACTCTAGCTGTGGCATGCATGCATTTCT
TACCACAATCTAAGATGAAAGGTGGTGCATCTCCGCTGTGCATTGCATACTTTAGGAAAA
CAATCTGCAAGATTTGAAGCAAGTTTTGAGCTGGTTGTGTCTTAATACCTTTCCACTACT
AGTACTTTGTCAGCCAACTAGGGGCTGTTTGGAAAAGGTGTTAAATTTTGTGTGACCACT
GGTATTTAGTTCAAGTTTGAGCTAAATAACCAGCAAGCACACAAAAATTACACCCATTCC
AAACGGGGCATTAGTGTTTATGAGTCACCTGCCGTTATTCGTATTCTCCTTGGATTTGAG
AGGATCATACTCTCAAGGCAAGGCAAGCGACCTATGCATAAAATCATTCTAATATTATGT
TCGGGAAGAAAGTAACGACACAATCATGGGTACTGATTCCAGTGATTTCTGAAACAATGT
AAAATCACATCTGCCTTCACTGGAACAGTAGAATGTAAAATCAGATCTGTCTGTACCGAA
GCGGCTAACGACGCAATCATTCTAACCATGTTTGTTCCGTAACTGAATTTTCCAATACAC
CGCTTCATAAAATCGGAACCACATGTACTGAAGTGGATTGGAAGACCCAAACCGGCACTC
GTCACACGAACCAAGCAACGTATGTATACAAGTAAACATGTGTAACTCAGATGTTGTGGC
GTCAGTTATGCTATGGTTCTGCACTGTTTTGATGTATCCCAAGGGGGCATGTCGCATGGG
TCAACCTGCGCTCATCTATATATTCAGACTCGGGGAAACTTACTGCCGCAAAAACCCATA
TGTTGCAACTTACCATGATGGAGTTTTAGGTCTGATTCACTATACAACTTACATGCCACA
TGCCACCAAGCACTAACAAAGAGTCCAATGTCGCATGATTGATGCTAACATGACACTACC
AAGAGTAGGTAAAGTCTCAAGTTGATAGAACATAGCTCGAATGGAAACACAACCAACTAA
ATAGTGTCCTTCCAACACCATTGCAACCAAGCAACTTGAAGGAGCACATCGAGTAAGGCC
CACTCAATTAGGCCACATCAGTTTGCGCTGCAAGATCCAGCTTCAGTTTCAGTCCGCAAC
TCCTGCATCGCAACAAGTATTCAACCAGTTAATACTCTACTTGGGTAATGTGTCACTAAG
CAAATACAATAAAAATGGTGCGGCTCAAAAGACTGAAAAAACTTGCAACAGTGGAACGTA
ATCTCTTAACATCAAACATTGGGTCTCGCTTAAGTATAGAATTTCCCAAGAAGGTGGTGC
TGTGTATGTTTTCATGTCTACTCTTTATTTTGTTCAGTCTTACCTTTATGAATGAAAAAT
GTGACACAAGGGCTTATGCAGATTGGAAATCAAGAGTCTAAACTCAGACCAAGTATTAAT
ACCCTTTAGTATCACCCGAATAAGTATTATCAATACTCCTTAATTCAACTTTTACCTATA
TATATAATGTTGTCTTAACAGTCAATGTTTGAAAATGTGATGAAAGGCTTGTGCAGATTG
GAAATCAAGAGTCTAAACTCGGACTAACATTTTTTTTATGATATCCTGGAGTTTTTCTTA
GCAACACATGTACCATAAAAATGAACACGTGCATTATATGCTTGCGGTAAATACACCATC
ACCTCTCAGATGCAAATGCAATCATGTAACTAGCATAGAAAGATAGATGAAAGAAAGCAG
CTGAAAAATGAAAGTCAGAAAATGATATCCTCCATGGTTTTGAAATGGCTATTGAAGGAA
CTAAGTGGTCCAAGGACAGCAGAAATCAATAAGGTCAGTTATAAAAGGTATTTCTATTAT
TGATAATGGAGCTTCTCTGTCAACCAACAATTTCAGGTATCATTATTATGTGTAGATGGA
ATTTCTACATACTAAGCCGTTGAGAGTGCTCAGTTAATATACCTGCATTTGTGGCAGACG
TGAACCCAGAGGTTTCAGCAGGCCGTGACACTTGAATACCTGTGAAGAGATTCACAGTAG
CCCCTTGATTAGTTCATCTGTGTTCTCTAACGATGAAGTATACTTTGTAAAAGCTGGATA
TTCATCTAGGTTTGAAAATGAATGCAGGTGTGGGAAAAATTTAAAATACTTAACCTGAAT
TTGCAACTGGTGGGTACCAACAAAGATAATTAGGCAGACCCGTGCAAGTTGGATTGCCTG
AAATGTGTTTTGCAGTTAGAACTGATGGCAGGCAGCCAAAGCCAAGCAAGTGTTCAGCTA
ATTTACCTGCATTAATCACGGATGAAGTCTCAATGTTTTTAGCAGGGCCTGTAGTACCAA
GCATGGTCTGTGAGAATGGAGTAATAAAAGCACCTGCAAATTACTTGAGTTGAGCAGTAA
GAAACGACAGCAGGTAGCCAGGCATGTACATGTAACACCCAGCTTGATGGCTGTGTCGTT
GTAATGCTAAATCTGTACCACAAAAATGAGCATGTACATGTAACTGACACGGTGTATCAT
AGAATTTGTGGTGCATACGCTTATCAACTCCCATATGCAAGTGTAATCCTGCAGCTATTA
TTGGGCATAAAACAAGTAGAAGAAAGAAAGCAGCTGACAAATGCAGGAGTCATAAAACTA
GAAGGTTCCAAAAATTAGTTCACGAACCAAAAGATGCACAAGGAAAGCTGATATATCTAC
ATGGCGAGTTATAAAACAAGGCAGGTAGAATAATATCATCAATGATGGAGTTTCTGTGAC
AAGTGACAACCAAGAATTTTAGATTTTTAGTGCATGAGTATGTGCATATGGAGCTTCTAC
ATGGCATGAAAACGGTTGAGGGTGTTCAGTTAATTTACCCACATTTGTGGCAGATGTGTT
CCAAGGGATTTTAATGGATTGTGAAACAAGAGTTAGAAATGATTCTTATAGTCCATACTC
CATACATTAGTTCATCTAGTGTTCTCTAACAATGAACTACTCTAGGAAGTACTGTATGGT
GTATGGTCTGTAACAAAGAGGAAGTGCAATTACTAGTAAATTAACAAGAGAGATACAACG
CAATTAAAGTGAGATGAGGCATCACAAAAAACCCATATGAAAAGTGCAACTGAAGTTCAG
ATGGACGGAGAGATGGAAAGCTGCTCACAACTATGAATTAACTACCTTCCATTGCACTTG
ACTGAAGTAGGTGCCCTTGATGGAGCTCAGGAAGTCTACCATCTTTTATACAATCCTCTA
ATGTTTATCATGTTCACATGAGATTGTCAGCGCATAGTCAAAGTTAGTGTCAGAAACAAA
GAAACAACAGATAAATTTACTATATCACTATCAAATATGTTCTTTACAAACTGGAATTTG
ATGGTCAGGGACTAATTCTAATTACCGATAAGATCCACCACCCGGTTCCGTCCCTCAGAG
TTCAGACCTGCCATAGAAAACATTAACTACCACACATATGCAGAGGTTATGATAGTAAGG
TTGCTTTCGTGCCAAGATGTTCATACCAAAAACTGGGCTAGAAGAAGGCAGGCTGCAAAA
GGCAACACATATATGTGAGTGTCATGTGAAAACTAGGAGACATAGCACTGCAGAACTGAG
GACCAGTTCGGTAATGAATGATGCTTGCTGCATATACGTACATACCTCCTCTTCCTGTTG
AGATAGGATTTGACAATAGCAGATGTTGTTGGCCGCCAGGATGTTTCCCTCCTTTGGCGC
CTTGGACGACGGGGACTAACCAATTAAACAAGACAATGCATGGGATGATGATCATATCAT
TTACAGGAGAACTAACTGTCGAAGCTGGTCAGAAAGAATTAAGGAGCAAGGTTGGATGAA
TGTATGAGTACCCGATGGGAAGCAAGTCATGCGGACTCCGTGGGCCATTCGGCAGCAGCG
ACCTGCGCCTCAACTCTGGGGAGTGATTCACCAAGTCATCGGCGACCAACGATGCCTTCT
CTCTCACCATTTTCCAGTCCAGGGACGCCCTACATTAGACAGGATTCTTTGTTTGAGGCT
CAACAACAACAAGCAGAAGAATGTCTGCCACCAAGTATATTTGAGTGAATTGCAAAAAAA
CCACCACATTTGAAGTCCTTATCCGGAATTGCCATCACATTTCTTGAACGCCCCAAAAAT
CTACCTCTTTTCTTGTTCATTTTCTCAATATACTAATATTTACCTGAACTGCGGCGAGTG
GTGTATCTTGTGGAGGATGGAAGAGAGTTTGGTGTTGCCAGCGCACATGGTCGTCAGTAT
GCCGACGTCGTGCTTGTACACCGCGGTCGCGACGGGGGCGCCCGCTGAGCACGCGGCGGC
GGCGTTCTCCACGGCCCAGAAGGTGTCGAGGAAGATGTAGAGGGTGCGGGCCTCGACGCC
CCCGATGGCCGGCGGTACGAAGCGGCGGATGTAGCCGAGGGCCTTGGTCCACTGGCCGCA
TGCCACCAGCTGCTTCAGACGCCGGCGGCTCATGTACAAATCCGTCTCGTGGACTATCCT
GCATTGCATTGCACGGCCGGGCTGCATTGGATTTAGCACGCACCTAGGAGACGTCACGGA
GCAGGTAAAGAAACGGCCGGCCGGGCGGGCGCGCGGGAGAGAGCACGTACCGATCGTAGG
CGGACTCGAAGCCCTGGAGGTAGAGGTAGACGATGAGCCGCCGGTTCCGGAGCCGCCTCA
CGAAGGGATAGTCGGCGAGCATGCCGACGCCGGGCTCCAGGGCGTCGATCCGCTCCATCG
TGCCGGGATTCGCTAGAGATTGGATTCGATTTGGGGGAACGACGCCTGCTAGCAGTCGAG
TAGTATATACTAGTGCTACGCAATTGCCCTGCCATTTTTCTTCCGAGGAATAGTTGGCCT
GCCATTTTATTACTCTCGAACAAGTGTGTTTTTCGTCCCTATAAGTTACTTTTTTTTAAC
ACGTCCTTATAAGTTTCCTTGTCCTGAAGATTTAGGTCCTTATTTATTTTTCGTGTACCT
TTCAGTTTCACCGATTCGCCCACACAACTATTAAAACCCGGACACTTTAGTTTCTACTAT
TCTTTTTGTGTGGGTGGGAGGGGGGACACTAGGCGCCGGCGCGCCGTCCCAACAATTGGG
ACGATTGAGCTCCACCTGTCCGATGTAACGATTAAAAATCGTCAGATCTGTCCCGCCGCT
TCACGAGTCAATGTCCCGAGCGTCACGGACACCGTGCCCTGAGCTTGAAGCACCACCATC
GTGTCCTCGTCGTCGGTCGGCACCCTCGCCAGCCGTCCTCGACGTCAGGTCGCCGCCCTC
GTCCCCGACTCTACCCATGCAACAGTTGCACCCTCTGGGTTGCAGCTCCGCGTGGCAATT
GCTATAGCTTGGTGACGATGCGGCACTCTCATGCCGTCGGGCCGCAGCTTCTTGGTGTCG
CTGCTCCCACCATCATCGGCATGCTGTATTGGTTGAAGCTTTTTCTCATATCACTTGAAG
TTTTTTTCACGATGGTTGAACCTTTTTCACGAGTTGACACTTTTTTTCTCATGACCACTG
AAGCTTTTTTTCATGGTTGAAGCTTTTCACACATCGATTGAAGCTTTTTCACACTACGAT
TGAAGCTTTTTCACAATACTGTTGAAGCTTTTTCTGAGCGACGAGGCAATGTGCAACGTT
TTGTTTGCTGCAATGAGCAACGAGGCGATGAGGAAAGCTACAACCGGTAGCCGTTTTTAC
TACAACCAAGAAGATGACGAAGTGTGGCCGACGACGACTGGTTTCAAACTTGTTGCAACC
GATAGTGGGAAAAGCTACCACCGGACATCACGGTGACATGAATTTTGCTACAACTGGTGT
TTTTTTTCTTTCACCACGGTGACTGTTGGAAATATGCCCTANNNNNNNNNNNNNNNNNNN
NNNNNTTATATTTCTTTGTTCATGATAATTTTCTATTGTTCATGCTATAATTAGATTAAC
CGAAAACCGTAATACATGT