morexGenes - Barley RNA-seq Database

Contig contig_1572151

Source Contig contig_1572151

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1572151 (4042 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1572151

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16026	4	1161 bp	MLOC_16026.4	Available	Available	LOC_Os07g12170.1, FRAME:+1, EVALUE:9e-24, 13107.m24462 protein ADP-ribosylation factor, putative, expressed
MLOC_16027	1	1200 bp	MLOC_16027.1	Available	Available	None

CDS Structure of MLOC_16026

CDS Structure of MLOC_16027

Contig Sequence (4042 bp)

>contig_1572151 4042 assembly3_WGSMorex_rbca.fasta
GCATCGGTTTTTTATTGATGTGCATAGCTAGGATCATTGCAAGGTCATCCTCCTCTTCAA
TATCAAATTCTTCTTCGGAAGAATCATATGACGAACTCATCTACAATACTGAATTTAAAC
TAGTCTATAAAAACTAGAAAAAGCATGCACCGAATTCATATAAAAAATATCAAGCTGAAG
CAAGACATACCTTGCAAGCGTTTTGTCGAACACCTTGTGGGCGCCGAGCGGAAGTTGGTG
GCCGAGCGCTCTACATCGATGGAATGGCGCGCGAGGGGCGGCGCGGATTAGAGGGAGATG
GAGGAAACCGAGGCGTCGCGGGCATAGGCCTGGGAAGCGCCGTCGGGTCGCCGGAGCAAA
TGAGGTGGCGAGGGCGGTGACGCCAACCCCTGGATCCAATGGTGGGTAGACGATGCGCTC
GAGTCGTCGCTGTCCAGCGCACGGTAGCGGACACACGAAATATGAGGCGCGCGAAGCCGT
TTCGCCTCGCGCGCTGAACCGTTTTCCCCCGCGCGCTTTTTTCCGCCTCCGTTGAAGCGT
CCGAAGCGGCTGCGCGCGCAATAGACGCTGTTTTTTCAACGCGACGCTTATATAGCGCAA
CTGTTGGAGATGTTGTTAGAGCTAGTAAAGAAAACAGGGTGAATGGCTGCCGTCGCACTA
ACCCTGATCAGCAGCAACATCGTCGGAAACAACAAGCGGCGTGAGATCAGAAACAACAAG
TAGCATCTCTAGTTACTATGCATATGGCGTCTAAGGCTGTCCGTAATGAGAGTATCATAG
ATAATATCATTCATGCCAACTAAACAATCTCAATGAGGTGACATATAATTTAATGAAGAA
AAAGAGGGTTGAGTATCATATCATGATACCATATCATATTAAATGATGTGCTACTATGTG
TCTTCTATGATAATAAATGAACTACTCTATGATACTAACATATGATACTATGCATTACAT
ATGTGATATCATATACTAGTATCATGTGATACTATCGATTACAACCAGCCTAAGATTATG
CACTCTGATTTAGGCGCGTGCTAATCGGCCGGTATGATAGATGTAAAATACGCTGAAATT
TTTTGTTATCTGAACCAATTAATGGCAAATTCTTTATTATCTCCGTCCCGTTGTATAAGT
CATTCGCGTAGTTTTAGGTCGACAATTTAACTATCTAAATATGTATCATATGTGACAAAA
AATATATATTTAAAATCTACATTCGTGTAGAGTGATATACTTTTCGTGATATATAACACA
TATTTAATTTTTCAAATGAACCACCTATACTAACCCACTCCTACGCCAACCTTTCTCAAA
TTTCAGGATGAATAGCGAATCAATAGGCATGCATGCACTGCGAGGATTTAATTGCCTACG
CGACAAATACTTTTGGAAAATCTAAATTCTCTTAGGTGCCCTATGCAGTTGGGAATACAT
AGCGCCGCAGCTTACTTCTAGCGGGACGCACAAGACGCCCGTCTGAAGCATCGCGCCGCG
GCGGCACCATCAACCTCGCCGTAGTACCCGCGATACCCATACGCATGACCAAACTGCCAT
CCTTATCAAGGAGGATCCCCACTACCCCACCCCATTTCCTCCCCAGCCGGTAGGCACGAC
TATTATCTCCCTGTCTGTTCCCGTTGCCACAGAGGAATCGGTCATCGATTTTCTGCCGAG
ATCACCGATCCAAAGATTGGATCTGACATTCGAATTGCGTGGTTCTCGGCGGCGCTAGAT
CTGCGACCGGTCAGCGTGGGGTTAGATTTGCGCATGAGGATGTGTATTGAGACGTTTGTT
TTTCGGGCTGGATCCCGTAATGTAGATCTGAGCGAGCAATGGTCGTGAATTTCAGGTGAT
CGGAAGAGTGTAAGGGCGAGATGGGGCTCGCGTTCGGGAAGCTCTTCAGCCGGCTCTTCG
CCAAGAAGGAGATGCGGATCCTCATGGTCGGTCTTGATGCCGCCGGAAAGACTACCATCC
TTTACAAGCTTAAGCTCGGCGAGATCGTTACCACCATCCCAACTATCGGTGAGATGTGCT
TCTCGTCTTGTTTGCATGCTAGTCTTTGAAACTATTCTTGGTGCAATTTTTTAGCAATAG
GGTCAAGGTATCTCTAGCCAATATTTTGGCTAACCAATAGTTGGGAGAAAATGTTAGGCT
GTAATTAATCAACCAAAGAAAAGAGTTCATATACCCCCTAAACTTTCACGATCTGGCTAC
ATTACCACATTAACTCCAAATTTGGTTATATAATCACCTCAAGTTTCCAAACCAGGCAAC
ACACCTGATCGCATACCTCCAAGCTGGTTTTGAAGATGTTTTTTTTGTGTGTGGAAGTTC
TGAAGATGGTTTGATCCACATAGTATGCGGACTAGGATTTATTTTTTAACTTGTACTGGC
AAATCATCCTGGGAACCATTATAGCAGTGCCTTCCTAGAAAAGCTGTCCTGCAGTCCTGA
CACATGTGAGACACAACATCTCTGCGGTGTAGTCTCGGAGTTAAACCTGGCACCCGCACC
ATGCTGGTGGGAAGAGGTTATCGACTCCTGCGTGGGAACAATATGTGCTATGAGGTAGGA
GAGGATGCCATGCAAGGAGGAGCGATGTGAGATGGTCCACTAGAGGAGAGCGTAGGTCAG
CAGCACCAGTGTGAACCGTTTTCTCTTCATGCATACAATTGTTGTGCACCCACTTCTCGT
CGTCCTTGTTTCCATTGTGCACCTACCTGCTTGCATCTGAGCAAGCTATGCCGTTTTAGG
ACCCCTCGCAGACCACGACAACACTGCGTAGGGGCTCACCTCCCGCAGACCATGACAACA
CTACTTGTAGCACCGGCTCGTCCTTTGTCGACTCAAACCCCTTCACACGTGTTGTTCTGG
TGCCAGCGAGATTTGACTCACCTAGATTGGTATAATGACTTGAGTGTGTGTGCTGGTGGT
TCCTCTCACTTGTATGCTTCGTTGATACCGATCAGCTTGATAGGGCGTCGGTTGATATGG
GAGGTGGGGTACTGGGTGTTGCCGATAGCGGTGGCTTGCAGCTATGTGATGATGGGAAGT
GTCTTGGCGGTGTCAAGATGTAGTAGTGTGTAGGAGCAGTGAGCAATGCCGAAGGGCCTC
GTGCCTCCTCCTGTGTTAGATCAAACACAACAACAGTGGCCGCTAGTGTTGTGACACACA
ACTAGCTTAGCTAAGTAAGTAGCCTTGGCTTCTCATCGTGAGGACAAATAAGATGTCAGC
ATAAGCATTGGGGGCCATGATGCTCTTGCCATACCCGAGCCAGGGCCACGTCCATCCAAT
GTTGTTTCTCACCGCAAGTATGCATCTCAACGCAAGGATGCATAAGAAGTCAGTGCAGGC
AGTAGGGCACATTCTACTCCTACCATACCTGAGCCGGTGCCATGTCCACCAAATGTTGTA
GTTTGCCACGGGCTTCGTGCACCATGGCGCTCGCCCCACATCGCCGTTCGCCTCATGGTC
GTAAAGTGCTTGAGCGGAGCTTTGTCAGTGTTGAAGGCGCGGTTGGTGCGCCTCGACCGT
GGTGGATGCTACGCTATGATTAGCAAGGTCAAGGTGCGACAAGAGCATCTCTTGACAATC
CCCTATTTTTTAACTCCCCATCCTACCCCCTTCCTTTATTTTTTCATTCCTTAGGGAATT
GAACTTCTATATGCCTAGCCCCAACCCCAAGACTTTATCCCCCAAATAATTTTGTTTGCA
CACAAATTCTTCAAACACAAATTTGTATTACTTAATTGCATAGTTAAACATTCCATTACC
TACTACAATACCACTATGTTGACATCAAACTTACTAAAGCATCTACATATTACATACTCC
CTCCATTTTTATTTACTTCGCCTATTACTTTTGTCACGAGTTAAACTTTCTAAACTTTGG
CCAACTTTATACAAAAAGTTATTAACATCCACAATACCAAATCCATACTATTGGAATCAC
CATTCAATATATTTTCGTACCATATATACTCCCTCCGTTCCTAANNNNNNNNNNNTTTAG
AGGTTCCACTAGTGGACTACAT