morexGenes - Barley RNA-seq Database

Contig contig_1572144
Source Contig contig_1572144
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1572144 (6457 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_1572144

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16024	2	1788 bp	MLOC_16024.2	Available	Available	LOC_Os02g17760.1, FRAME:+3, EVALUE:9e-120, 13102.m01984 protein cytochrome P450, putative, expressed
MLOC_16025	1	221 bp	AK373698	Not available	Available	None
CDS Structure of MLOC_16024

CDS Structure of MLOC_16025

Contig Sequence (6457 bp)

>contig_1572144 6457 assembly3_WGSMorex_rbca.fasta
ATTAAACGAAGTTATACGCTCCTCGCCTCAGAAAACATATAGGGTCTTAATCATAAAAGT
GAAACGTTTTCCTCATTAAAGAAAGGACTGCGGGTTTATTAACAGAAAACGGAAGGGTCT
TTTTGCAAAAATGCCATGACGGATGGCCAGAAATCCTATTTGCTTTATTATTAGGAAGGA
AGAGATTGGGAAAATTGAAAGGAAACTGTAGATATTTGGGTCGACCGAGGAATGTGGTGG
CAAATCCGGACAATGTGTCATAAATCCTAGTATTGATGTGTTTGTTGTTTTCTTGACTGT
TCTCGTGTGACGCCAATGTCTGCGATAACGTGCTCCATCAGGCAACCTTGGACCTCTGAC
CAAGTGAGGCAAATGGTCCTCCAAGGGAGCGTGAGAGGGGTTAGTAGTAGTACCCATACT
CATCCTGAGCGGCGGCTAAGGCCCGGCGGGCTTGCGGTCATGTTCTCTGCACCAGGAGTC
CAGGACCTAGCCCGGCTATATATCCGAGTGTATTCTTGTCATGTTTTGTACTCAGCTGCC
TGCCATGGAGAGTTGGTTAACCTTATGTTGCATAGCCATATCCACGTTACTGGCCCTTTG
GTTTTCCGGCGGCAAGAGCAAGCCCAAGAAGCACTTGCCTCCCGGGCCATGGACTCTCCC
GATCATCGGCAGCCTCCACCACGTCCTCGGCACGCTCCCTCACCGCTCCATCACCGATCT
GTGTCGCCGGCATGGGCCACTGTTGCTCCTCAAGCTAGGCGAGGTCCCCACGGTGGTGGT
CTCCAGCGCCGAGGCGGTGGCGCAGGTAATGAAGACAAACGACATCGCCTTCTCGAACCG
GCAGACCACCGAGCTACAGGAGATCATTGGCTTCGGCGGTAAGGGCATCATCTTCGCCCC
CTACGGTGACCACTGGCGCCAGATGCGCAAGCTCTGCATTGTGGAGCTCCTCAGTTCCAG
GCAAGTGAAGCGCATGGAGTGCATCAGGGCGGAGGAGGTGGGCAGCCTCCTCCGCTCCAT
TATCAGGACCACGGCTGCGGGCGCCACCGCCAACCTCAGCGAGATGTTTGCGGTGCTTGG
CAACAATGTGGTGGCGCAGGCGGCGTTCGGCGGTAAGTTCACACGGCAGGAGGAGTTCCT
CCACGCAATGGACCAAATCATGGACCAGCTGGGGGGCTTCTGCCTGGTCGACCTCTTCCC
GTCGTCTCGACTTGTGCGGGGGCTCAGCAATGGCGAGCGCCGCATAAAGAGAATCCGGGA
CCTCATTGAGCACATCATCACCGAGATCATTGACGAGCGCAAGGTGGCGCGAGCAGCCGG
TCACGGCGCATGCAACGCCGACGATGAGGACCTGCTCGACGTGCTGCTCAGGCTGCAAGG
GGAGGACTCGACGTACCCTCTAACCAGAGAGATTATAGTCACCGTCTTGTTCGTGAGTAT
TTTCTTTTCAGTCATTTTTTTATCGTTTGCATCTACTTCCTCCGTCCGGAATAACAACAG
TAGCGTTTGTTTCGAAAATTTAGATATTATTTAATTATATATATATCTCACAACATTACT
ATTTTCAGGATATGTTTGCAGCTGCCTCAGAGACCACAGGAACCACTTTGGAGTGGGCCA
TGTCAGAACTAATAAGTCATCCTGAAGTTATGACTAAGGCACAATTAGAGGTTCGAGATG
TACTAGGTCAAGGCCGAGCTATCATTAGCAATAGTGATCTTGCAGAACTTCACTACATGC
AGATGGTCATCAAGGAGGTTCTTAGATTGCATCCACCTGCCGCTTTACTCCCCCGCAAGA
CTAGAGAGGACTGCAAAATTATGGGTTATGACATCCTTAAAGATACCAACATATACATCA
ATGTCTTCGCAATTTCCCGGGACCGTCGGTATTGGAGCAATCCAGAAGAATTTAATCCAG
AGAGATTTGAGAACAACAATGTGGATTATAACGGGACAAGTTTTGAATTCACTCCTTTCG
GAGGTGGGCGACGACAATGCCCTGGAATAGCATTCGCATCATCAATTTTGGTGATTACCT
TGGTAAACTTTCTCTATCACTTTGACTGGATGCTTCCTGACGATGCCAACTCAATGTCAC
TTGATATGTCTGAGAAATTCGGGTTCACTGTCCGTAGAAGGTCTGACCTACTGCTCAGGG
CCATTCCTCATGTATGCTCCAAGGCTACACATATATAGATCCAAGACGTGGGTGTTCATA
CTTGTTGCATTGTACCTTTATACATACATTAGAATAAGAGAAGCTCATGGAATGACTTGT
TGAACCAGATTACATGCCAAAAAAAAAAAAAAACTGAGAGTAACTATTGGCAGATACTGA
ATCTCGCATTTGGGAAAGCATGCCAACATCTGCCATGTATCTTCCTCTGTGGCCAATTTT
GAAGATGTTATCATGAGTGATTCTAAGTAAATATTACTGGTTTGTATTTGTTAAGTAGTC
GACTTACCTTAAGAACTATATTTTTATGTTATAATAGTTCAAAATTATTGTCCTTTATCC
GTTCTCATTGTTGCAGGCACATTGAGCATTTTCTATGCTGCAACTGTGTCGTATATGTGT
GTTGGTTACCCGTAAAAAAATGTGTGTGGGCTTCTATTTGGCTAACTACCAAGTTTTGTG
ATATATGCAAAAGCAGAGGACTCAACCAGGCTAGCTAACTATGACCATCAGATATATGCA
GGAAATAAGGACTCAACTGGGCTAGCTAACTATAACCATCACATATATGAAGAAGCATCC
GTAACTACGGAAAAAAATGAAGATAAATCTAACCATAACATTAAACGTATGGACCAAATC
AGCCCCTCATAAAACAACGCATAAACTAGGGTTTAACATTCTATCAATCTCGCAACTCAT
CATCTACTTGTTATTTTACAATGACTTCTCTTAAGTCCATAACATGGTGAAGTGTCATGT
AATTGACGTTCACATGACACCACTAACAGGGACGGACCCAGGAAAAAAAATTATGGGGTT
CAAAATTCATAACCATAGTCATGAACCAACAGGGCAAAAGATTGTACATAAACTAAAACA
TGGGTGTAATCACTTCATTCCACACATGTAATTGAAAAGTGGGAGAAAACTAACCATTTA
ATTGCGTCAATATGACAAAATATTGTTCTAAAGTTGCATAAAAGAACATCGGCACATTGT
TGTAACAATCAAACCTTCAATCTAAAAAAAAGACATTATTAAATCGAGGAAGTATGTAAA
CATTGATGAAGGGCGGTACTAAAAATTAGAAAAAAAAAAGCTTTAGCGCATTACCTTCCA
TTTCATGCCATGGCGATCTCTCACCGCATGAAAACATATAACTACCTCATCATTAAAAAA
ATAACCAATTCTTTCTCGACAAAGCGGATAAGGCTATTATTCATAAAATCATCAAGTACT
AAAAACTAAAATGTTACATGAATTATCTGGTACATGAAGATAAAGTGTGCTTGGAAGTCG
GAAGTAGAAATATATTATCCAAATTAAATTTAAGTATTTAGTCAGGACTAGCCACTGATT
GTAAGTACAAAATTGCATAATAAATTTATATGTTATTATAGAAAATAATGTTTGAACCGA
CCTAATCACCTAAATCGATAGATTATACACATATAAGTTAATGATTTCTAACACAGAAAT
CACAAACGAACAAAAAAAATCAAAAAGAAAACACTAGATGATTTATAGGTCCTACCTTAA
TGTCAAATAGAATTAGGGAATGGTGAAATTGGGGTCCCTGTTTGGCGACGGAGTTGTGCT
ACCGCTTCGACATTGTCATGCAAGGCCACGGCGATGCGAGGGATCGTCGGATACTGCCGG
CGACTTTGCGATGGCATGAGAGGCGAAGTAAGTGCTTCCGTCTGGCTGCACACGTGATGG
CGTGAGGTGTGTGTCTACCATCTAGGTTTAATGTGGCAATTGACGGTTAGGCAACGTGCA
TAATGCATACTTGCGTTGGGCCGTAGGCTTCAGTGGATGAGAATTTATGCGTTGAGCTGC
TTCTTTTGAGTTGGTATTTGAAAAATATACAACAGATTTGGCTGAGTGGGGGCAGGCTAC
TCGGCTGAGTGGGAGCACTTGGCGTCGCTCGTTGAGCACTCCTACGATGCGGGTCTCGCA
GCTGGCGACATCACCCCCACCGCACTCAGAGTGACTGGTGGTGATAGTGGTGGTAGCTCC
TGCTCCACCTGATCATCCGACTCCGCCCTGACACCCCAAAGTCGGCCCGGGGCCGAAGAA
TACTCAAATGACCCAAACCTGAGCTGATGCGTCGAGGTGGCTACAGGTGTCTTCTCCTTC
ACAGCAGCCGTCTCATCTGACTTGGCCTCTGGTGTCGGACTCTATCTGGAGCATCCCTGT
GATCCGAACCCTTATCCTGGTTCCTATCTCCACTTTGACCATCTTCAGTATCCATATCGG
TGTGCCGAGCCAACTCCTGAAAGTGCTGACTCTCTTGTATCTCATTATCCAAGTCAAAGC
TCCTGCCATCATAAGTCCACCTCATCATGTCTGGAATATGCTCGATGCTAACCACACTAA
CAAACAGGCGAGCCACTCTCTGCGCACGCGTGAAAGGCATATCCACCTTCTCTGTTTTTC
CAATCAGAGAACCAAGACTCCAAGTTACCATAAAATCATCTATAGCCGCACATGGAGCTC
CAAGAAACCTGACCCAAAGCTTAGATAATGGAGTTCCCTCGGGCTCCTTCTGAGTCCAAG
CATCAATCTCAAGAACGCAGTTGCTGTTTGGAACCCTGTTCATCCCAAACTTCAGCAGTC
TCGCAAGATCTTCCTTAGTAAGAAAGTCCATCCTGAAAGAATGCTCGTCCATTCTGACCG
GATCCCACCGGAAGCTCGCAGACACCAACTCGCACATGCGTTGAACAACCTGGTCCATAG
TCATCGTTCCACGGGTCACCCGAACAACACCCGTCCGGGAACTCTCCGGAGTTGGTGTAG
TTGAAGTAGAGCGAGGAGACTCAAAGAACATAAGCTCCGAGCAGCAAGCCCCATAAATAG
TCACCACTGGCTTCGGCCCCAAGAGTAAGGGGCACTCTCCCGTCTCATGCCTCGGCTTAC
GGCAAATGTCGCATAACTCAACCGAGCACTCAGCCACAAAATGCCCCCGTCCTCCGCATC
GGTAACATGTCATCTTTTCTTTTTTCCGAGCCCACTTCATAGCTCTCTCACCATCAGACT
TATCGCTTGCTTTGTCCGACACCATATCCCGAGTAGCAGCTTCCTTTACAAAATTCACTT
TCACCCCCGCGAGAGCACGAACCGCTTCCATGGTTGTTCCCGTCAGAGATGCGGAAGTAA
TGGCTTCACCATCCGTGTTTGCCATAGGCCCCGTCCCAGCTTGAGCGTCTTGCAGCGGTG
GAATAGGCTCGGTCCTAGGTGGATCCCTACGCGGGTATGTCCGTCTCCCACCCCATAATA
CATACATAATATTGATCCATACCAAGATAAGAAAGAACACAGCTAATACAACTCGCGTGA
GAAGTGTAAGTCATTAAGCATACACTATAGCATAGGAACAAAATAATGAGATGACTAAAT
AATAACCAGCAGGTGCATATTGTTGTAGAACTCACCTAGAATAAAAATGTATTATTTCCT
CGTTATATTGCCATTGTTCTTGTAAGTAAATTTCTCTCAAGGTCGTTATTACAATCAGGT
TGTTAACATCACAATAAACTTAAAATCTGAGTTTGTGCCAACAATGTAAAACTGCAATGG
CATGCCACTACTATAAGAAATTGTGCATCCCTGCAAATGACAAACGAAGATAGTGAGATG
CCAGATCCAGCTTGAAGTGTACTGTAACCTGAAGAGAATCAACTCTTACAGGCATGTTTA
TCGAAGGAAAAATAGATATGGAGAAGGCAAGAACTTACTCTGTAGCTCCTGGGAAATTCA
GAGGCCCATCTAAAATCTGCATGTTGCAAAGACACTCTTTTAACAGCATCAAGGAGGCGG
TGTTCCTCAAGTGTGTCCTGTCTATCAAGAACTTGCTCATGTTGTACATTTGCATAGACA
GAGAACATTAAATAAGTAAATCTATATCCTATTAGAAGGAAAAGAGAGAAGAACAATTAG
TCGATTACAAGGTAGCAAAATACGAAGCTCCTGTAGAAACAGTCCCCATCTCCAGTCACC
GGTCTAAATTCAGAATACGCATCAAGATGGTCCACTCCTTATCCCGTAGCCAAATCGGGA
ATCAGATAATATTTTCTGACTTCAGTGGTGGGACGTGACTGCAATGAACAGTGTAAATAC
GGAAATTAAAATTACATAGACAACAGGAGCAGGCAACGTTTGGAAGTGTGTGGAGTCTTT
GGTGGTGCTTTTGTTTGGAGCAGGCTGTTTTGGTCGATGAGGTGAGCAACAGGAGCATCC
TTCACATGCAATTGCGTCGGGCGAGCTATGTCGGCTT