Contig Data
morexGenes
Links



Map Locations of contig_1572012 (5434 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1572012

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_15972 2 1448 bp AK356512 Available Available None
MLOC_15973 6 3454 bp AK360384 Available Available None





CDS Structure of MLOC_15972






CDS Structure of MLOC_15973






Contig Sequence (5434 bp)

>contig_1572012 5434 assembly3_WGSMorex_rbca.fasta
CGAGCACCGTGGCCATCGCGGTCACCCGGCTCGGCGGCCGCGCCGCGGTGCTCGGCAAGG
TCGGCGACGACGACTTCGGCCACGAGCTCGTGTACAGGATGAACCGCGAGCGGGTGCAGA
CCCGCGCCATCAGGTTTGACGGTGCCGCGTCCACGGCCACCGCTCGGATGAAGGTGGCGT
TCCGGGACAGGGAGGACGGCAGCGGCGGGACAAGTCTGGTGGCCGAGACGGTGAAGAGCT
CTGCCGAGGACTCGCTCCACAAGGACGAGATCCATGCAGATGTGTTGAAAGAGGTGAGTG
CCGTCTCCATAGGCGAGAAGCTGCATTATATACCGTATATTTGTCATAAGCACAGAATGA
GTTTCAGATCTAACATGTGATAATTGCACAGGCCAAAATGTTGCATTTCAATTCAGAAGT
ACTGCTGACGCCGACGATGCAAGACACACTCTTCAGAAGCATTGAGCTATCCAAGAAATT
TGGAAGCAAAATATTCTTTGATCTCAATTTGCCATTGCCTTTGTGGAGGTCAAGGGACGA
GACAAAAGAGTTCATAAATAGGGCATGGAAGGAGGCTGATATCATAGAATTGTCAAGGGA
TGAGCTGGAATTCCTTCTCGATCACGAGTATTACGAATATAAGCGAGCCACCCCGCCTCA
GTATTATTTGGATGGGTTCCATTTAACCAGGAACTGGCCACAGTACTACCACTATACCCC
TGAAGAAATTGCTCCGATTTGGCATGATGGAATAAAGCTCTTGCTGGTGACCTACGGAAC
ACTTCGTATCCACTACTACACACCCAAGTTTCATGGCTGTGTGGTTGGAACGGAGGATGC
ACTCATAACTCCAACCACAACTGACCGGACGGGTTCTGGCGATGCTATTGTTGCTGCTGC
TATTAGGAAGTTGACAACTTGTCCTGAGATGTATGAGGACCAGGATACATTGGAGAGGGA
GCTAAGATTTGCTGTTGCTGCTGGCATCATTTCACAGTGGACTATTGGTGCCGTGCGAGG
GTTTCCCACTGAAAGTGCTACCCAGAACTTGAAGGAGCAAGTATATGTGCCTTCTATGTG
GTGAACTGGTGATTGGTTAACTAGTAAATCATTTCTGATGAAGGAGGCAGAAATTTATGT
TATGAGCATGATTCATAGGTGGTGCAGAAGAAGTGAACAAGGATAATATTTTACCACAAG
AGTTGACAGGTACCTTTGTCTACCATTTTAGCATCCAGTTTCTACCATAACAAACTTAAA
CTTCAGTACGAAAATGTCTCCGCCACTGAAAGACTTATATTGCCTGACGATGAAAATTGT
TTATTGTATTTGATATATGCTACTGTTAAAGCCACCTCTTTTTTACCTTTTTTGTTTAAT
GCATATCCACTAAGCATAACGGACATGTCACACAGCAAGCCACAAAAATTAAATGCACGG
AACTACCTGCAACATATCTAATGATAGAAAAAAATGCTACGAGTACAACGAAATTTCAAT
CGTTTAAATAGCAGCGAAAGCAAAGATTGCATCATATGGACAAGGCTATTTTTTTTCTTA
TTCATCACTTGCTGTTACAACTTTGTCTGTAGCTGACAACTATTGCATATACACAAATCC
ATCCTGAATGAAGTCGTACTTAGATTAATACAAAATTTTGAACAAGAGAGCAAAGACTGT
ACATTCACAGTATAAACGAAGTACAAACATGTATCGGAAGTTCTCTGACTTGCTAATCCT
ATCCTCTGTTGTACATTTGTCCTCTGAAACTACTCGAAATCCCTTTGTCTTCCCATCCAT
CGCTACACTTGAATAAACAATTTGTTGAAAATGCACTTCTCGGAGGACAATGAGTTAACC
TCTCTTTCCCACCTCCATATGCAAGAACGAGTATTACATACATTGTTAGCCTCTACTAAA
ATAATCTGTGGTATGTTGCTGTTAGTTTACTAGAAGTTGCAGTATTTGGTTTATCTCAAT
CATCCTAAGAGATGTCTACCTATTTCCATGTCGCATGCAGCGAAGAGGGTTGAAATATCC
CCAATCCCCACCGCTTCAAAGTAATTCCATGTCGCTAAATCCTTTGTGTTTTTTTGCACA
AGCACCCTGGGAGAGGATTTGCATAAAAATACTCCTCTTGCCTTGGACTTTGACCAGACA
GCCTCTGATATGGACCTCCAAGTCTGTTTTCATGATGTGTTTTCACTTTGTTTTGGAAGT
CGTTCCAAGTTATTGTACCCTCATCAAGCTTGTCAATGAGCTCAACAAGCTTTTGCCTGT
AAACAGTTAAAGAATTCAGCACTTAGAGTTGAGATGTACTAATAACTTAAAACAGCATTC
CCATAAATGTACCTGTCAGGATTAATGGTTGTCCGGAATCCTTCAAATCTTCTATGACCC
TGTACTGCTTTGGCCATATTTCCATCATATGTATACACAAAAACATCACTCTGGAGGGCT
ACATTGTAGTCCACTGCAGCTAATCTGTTTTGGTACAGCTTGAGGGGCTCTAATTCATCT
GCTGTTGCTAGACTATAATGTGTGTAGACATTTGGATATGCGGCCTTTAATTCGTCCATA
CTATGTCCACCATATATTTCACCTGCTACAATGTAGATATTCGTCGTGGAAGGATAGCCC
ATAGCTTTAAGAAAAAAAGCTGCTTCACGAGGAGTCATAGGACAGCCTCCTTGAAGTCGC
CTCTCCCTGCTGTTAATTTCCTTTTCTTTCCAGTGCCGTACCTTGAGTCTCATTTCTCTC
AGCTCCTCTGCCTCCTGATGTGTTAGATTATGGCTGCAGCCAGTAAATGAGAGCATGTCC
TTCTCATATCTGTCAGTTGATAAGGAAAACAAATATATTACTGAGCTACATATTCCTCTG
CATCGAAATGATAGTAGATTTATTAAACATCTGCAGCTGCGATCACCTTAAATGAAGTGC
GATATAATGGTTGGACCCATTCCTCAGTCTATCAACTAGAGTATTACCTAGATCTTCAAT
TTCGTTTTTGTATTTTAGTGCCTCGTAATTTGTCCGGCAGCGGAGTTGTTGGATATGAGG
AGCAAGACCGTTGTTGACAATTCGTGAATCTGTGTGTGTGAATTTAACAACTTTGACCTT
CTTTAGTGTCCGTGCAAAAGCTCTGTAGTAAGAAGCCTGCAAAAAGGAACTAGGAATCCA
TCATTGTTCAGCCATACTAAGAACTGTCCCAATTTCTAAGCAACTGCTATGTCAACTTGA
GTAGTTTGTTCATACCCTGGACCAGGAAGATGGTGCCCTCGTATAGAGTTTCGACCTTCT
GTAAGCTGGCGGCAAGGAGTCCACAATCACAATATCATCCTCTAGAGTTTTCTTGAAGTG
CTCGACATCAAATATATCTTTGAAATCACTGCACGCCAAGACATAAAAATATCAGTCATC
TGAATAGGTTTTATAGGATCCTCAGTTATTGTGATGAAGAGAATAACAACCTTGGATCAG
TCCAGAATGATCTGTGATCCAGTGTAGGGATCACTAGTGTCGCATTCATGATCTTAGCAA
CTGCAACCATATCGCTTATCTGCGAGGGTGATTTCAAACGAATGTTAATGAACTGCTGAA
AGGCATCTTCAGAATCTAAATTTTGTCTTTCTAGAAGAAAAACATGAACGTGCACTTACT
CCCATTCTCATCTGGTTCAGTCCACCATTGGCATCAACCATGATATAGCCAGCTGTTGCA
TTGCTTGTTCCTGGAAAAGAAGCATAGCGATTGGTCGAGTTTACACGCTCATTTCAGGGT
AGCATTAACTTGAAAGGTTGAAGGTCGTTAGTCCAAACTATCAGATGTGGAAGTGGAGAC
TTACTGTGGTGGTTTTTCGGGCGTTCGATGCATTTGCTGTAACCCTCGCTAGCCGGCATC
GTCCATATCTTGGGAATCTGTTTGTGTTGTCAGTGAACTTCAGCACATAGCTAGCTGATT
CATATCATCTGAGCAAGAATTTGCTTTCCATGCATGAACAACAAAAAGTAGCTAAACAGA
ACTAGACGGTCTAGATCTCAGCTAGAAACATCGGTGTCTTTTTTTTCTAGAGAATGAACA
TCGGTATCTGACTGACACCCATTCTGCTACATCATTTTCAGGTATAAGGACACTTTAATC
TGCGTGTTACGCAGGCAGTGAGCCACGCTTCATGCTGTCCAATCAGCGGGGAACTCTTTT
GTGCGAGTGTTTCCAGTCACAGAAGCACTATTGTAGCACTTGGTGGGGATAGGATTGATT
GATGTGAAACCCCCACTTCTTTTTCTCCTTTTTCTTTTTGTATTTTCTCTTTGCAGACCG
GAGAATGCAGCACCCCGGTTCTGCTTCCTAGAAGCATATGTAGAAATTTTGTAGAGTAAG
CAACGCTAGGAACCTCCAGTAATTTGTTCATTCGCAGAATTCGGCGCCTCTGCCGGTCAT
TTCTATCTTGAATCTCCATGGCGTTTCTATTTTTTAAAACTGTTGTACCGCCTGATTACC
GCGCGGCAGTGGGCTGTGGAAATTGACAGCACGTTTCTACAAGTGTCCCGGTTCTGGGAA
CCTCAACCGGAGCATCGACATCACCCATGGCCTTGAACCGCAGGGAACTACCACTACCCC
GATTGAATTGAATTTTTTAACGGGTGACCACCGATTGGAAAGAAGAAACAGCGATGTGGA
TGAGAATACCGGTTTACGGCCACACCACAGACGAGACGAGACGAAAAGAAGGGGCACTCA
CCATTCATTCGTCGACGGAGACGCCGACGGGAACGCTTCCTCTGGAAGCTGTGAAGGGTA
TTTTGTACTACTCGGTCTACTTGCTTCGTACGTACTGTATGATTCTACGGCAAGAATACA
ACTAGGCTACTGCTACGACCTGAGCTCAGCAGACGGCTGCGAACGCCCGCCAAGAAACTT
CTCAAATTCTCTTCTCTTCTCTTCTCTTCTCTTTGCGTGCACACACACGCACACGAAGAT
CAGGGCACGCCTCTGGTTCCGCCGTTCCGCGACGATTTCCCACCCGTTTTTGGCCCCATG
CATGCATGGCACGATCCTCAACGGTATTTGTCGGATATCTCAAGCTGTTGTGCCGTGTAT
CGAATAAAGTTACTATAAAGATAGGGTATACATGTGTGTGTTTATAGAGATGGGTATACA
TACATATGTAGTATGTACGATCATCTGTACTAATTTTATAACAATCAAAAGGTACTTTGG
TTTTAATCTAGCTTGGTTATATTGGCGACGAACGGACTGAAACTTGGCGGTAACAAACCG
AGCACAGGCAGCGGCGAGACGCACTTACCGGCGTGTCGGGCGAGAGGCGAGCGAGGGCCG
TCGGGTTCTCCTCCCTCCAGCCCAGCGCCTCCCCGTCCACCCTCCGAAGGGGCCTCCCCC
CCCCCCCCCGCCCGGCCCGCTCCCCCCCCCCCCC