Contig Data
morexGenes
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Map Locations of contig_1571856 (5366 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1571856

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_15911 2 1288 bp MLOC_15911.1 Available Available LOC_Os12g38140.1, FRAME:-3, EVALUE:8e-54, 13112.m03927 protein expressed protein





CDS Structure of MLOC_15911






Contig Sequence (5366 bp)

>contig_1571856 5366 assembly3_WGSMorex_rbca.fasta
GAGAGGTCTGAGTATTTGGCTCAGCTTGCGCTACTTCATCATATGAATAGGAGTAATGGC
AGATGTTGTCAAGATGACGGATCCAAGCTGTTGTACTACTTTGTAAGGCCCTTAAAAATA
ATCAATAAAATGGTTGCATGCATCGTGGGTTATCCTCCTTTTCAAAAAAAAAAAAATACA
GCGGCTGTGATTCTCTCTTGTGCATAGTTCTCAGTTCTCACTGCCGGAGAAATTAATCTT
CGTTCCACACTGTTCTTGGCTCTCTCTTGGGCTTCACATTGACAACCACCGTTAGTTCCT
CTTCCTAGAGATCACATTCTACATCATTTTTACTACCGGTCTTCTCGCAGATATTAGATT
CCCCCATCACGAGGAGAGAGAGGAAGGGCATGTGCCGCGCCCATGCGCGAATGTTTCTCC
TCTTAGCGTGCATGCACGTTGAATCTTTCGATAGTTGTGGCAAGTAAGAAAAAAAAACAG
CAGTTTGGTGACCCAGCCAAATTTTAAATCTGATTTAAACTAGAACAAACACACACACAC
ACACCCCACACCAACGACGGATACAGAGCTGACGACATGCAGTTCATTGCACGGCCATGA
AACATCTCTAGCCACACATCCACCACCGCAACTACTAATTGAACAGCAAATCCGACACGA
CGCGACAAGATGAACCAACTAGCAGCTGCATGCAATACGACTAAGATCCGCCAAGCTGCA
GACTTATTAAACAAACATACCCAGCAGCAACCTAGCTACTCTAGCTCGCAAGCCATTCCA
TCGCTGGCTGGATCTACGGCTTGTAGAAGACGATCTTGATCTCGTCGACGCCGTGGCACT
TGCCTCCGGGGACGGAGTGCTCGAAGCACTTGCCGCCGCTGGTGCAGCCGGCGGTGGGGC
AGTGGTCCTTCAGGGGGTGGCCGTGCGGGGTGATGGAGACCCGGATGGGCATGCGCGACT
GGTCGGTGCTCACCTGGTACCACGCCCCGCCGTCGTACCCGAGGTGGAACTCCGTCACCA
CGGCGTCCTGCACCTTCACGCGTCCAGTCCACGAGCACACGGTGAACGAAACGTGGGTGC
CCTGGCGGAGCAGGTGGCCGGGGCTGTAGAGGAGCTTGCTGTTGGCCAGCGGCTCGATGC
CGAGGGAGAGGTCCTTGCCGCACAGGTTCTGCACCGTCACGTTGCGGCTCGGCTTACAGT
TCTGGGGGTCCTGCCCGGCGGCGGACATGGCAGTGGCTGCCAGCGCCACGGCGAGGAGGA
GAGCAGCCAGGGGCTTGGAGAACGCCATGAGCGGTTTCAACTGTTGGACGCTGGTTAGGT
AGGAGTGGAGAGGTGAGGTTTGAGTTGAGGTTTAAGGCTCACTTTGAAGGGTATTTGTAG
GCTAAGGGAAGGAGAATTAGGGCTTTGTCACGAAGGCTCGAGATTCTTCTCAGCTAGCTG
GGCAATGCCCAATCAGACGTGGTTAAAACTTTGTTTTGTCACTGCTACCAGTCACATCGA
TTTATTGTCAGATAAAGATTTATGAGAGATCGATGGCGCAGGACAACGTACTATAAAATG
TTTTCTTCCGTTGTCTCATACTGTATTAAAAATAGCTTGGAAGGACAAAAGGTTAAATGA
ATATAAAACATGACCTAATGCGATCGGAACAAACGAACAAATATACGTTTTCGATCCATT
CTCGATCCGTTTCGGTTCAAGCTTGAACCGCGTTTGCGGTTAAACAGACACGCGCGGACG
GGGCGCGACGCGTGTGCTTGTTCGCCCCTGGCCCGCTAGTCACTGACACAACCCTTATCC
TGCCCTTTCCTCGCTCCGCCCTCGGCCCCTCGTCCTCATCGCCGCCACGCCAGTCATCCA
CCTTGCTTTGCCCGTCGATGGAACAACCCCTTTTATTCCTCCCTTGTTGTCGGTCCGCCC
TTCGCCCACAATGGTCCACCTTGCTGCTTGCGAAGGGGCTGGACGTGCCCTTTGCGGCCG
CGTCTCCACCACAACCGCAAGGTGTTCGATGCTTTGCTCTCAGGGTACCATGGATAGCGG
AGATGGATACTTTTTCACAACTTGATTTGTTCATCGGATGATTCATCCTCACAGGGTGAG
GACATAGTGGTGACAACATTGGTAGTCCATGACCACATCAATAGGACGTGTCCTCGATTC
AGGGGATCAATCTACGGCCATGTTCGAGCCTTGAACCGCAATAGGGAGAAAGGGTACCAT
CTCCTCTAATCCGACTACTTTGAGAGAACCGCGCTGTACAAACCGCATCAATTTTGTCGC
CGCTTTCAAATGAGGGGACATGTGTTCAATCGTATTCGGGAAGGAGTGGTTGCATATGAC
CCATACTTTGAATGCAAAGAGGATGCCCTTGGCAAGCTTGGCTTCTCTTCTTACCACAAA
TGCACTGCGACTATTCGCATGCTTGCATATGTAATTCCTGGTGACCTTGTGGATGAGTAT
GTTCATCTGAGTGAGTCCACGTGTCTCCAATCAAGGTACATTTTCTGCAACGACGTGGTG
GCCGTGTTTGGTCCTGAATACCTCATAGAACCAAATGTTGCTGATACACAGAGGTTGTTG
ACGGTCAATGTCGAGAGGAGCTTTCCGGGCATGCTTGGTAGTAACGATTGTATGCACTTT
AAGTAGAAGAACTGTCCATTTGCTTGGCAGGGGTAGTATAAGGGACATGTGAAAGGTGCC
ACTGTCATACTTGAAGCTGTGGCTTCACAAGATATGTGGATATTTCATTCTTTCTTTGAC
ATGGTTGGTTCTCACAATGGTATTAGCGTTCTTCAGCATTCTCCAGTGTTTGCAAGGCTT
GCAGAAGGCCACTGTCCCAAGGTCAACTTTGAGATAAGTGACCACCATTACAACAAGGGA
TATTATCTAGCTCATGGTATCTATTCCCAATGGTCCACTCTTGTGAAGACCATACCCAAT
CCGCAAGGAGATAAGAGATAGAGTTTTGCCCAAATGCAGGAAAGTGTTAGGAAAGATGTG
GAGGGTGCATTTGGTGTGCTTCTTTCTCGATGTGGTATCGTTCGAAACCCTGCATTGACA
TGGAGCAGTGAGAAGCTTTGGAAGGTGTTGACTGTTTGTGTGATCATGCACAACATAATC
GTGAGGTGAGCGTGATGGCAACATCTATGACAAAGGGTTTGATTTACACGGTGAGAATGT
TGAGAGTGAGCACTCACCTCCTACAACCTTTGAATAGTTTGTCCAATTTCATCGTGAGAT
GCATGATCGGAACGCTCATACTCACTTGCAAGATGACTTCGTTGAGCACATGTGAGATCA
CATTGGCAATGAGTAGATCTATCGGTTTAATCTCTTTTCGTGTGCCCAAACTTTGAGTGG
TTTTGTAAGACTCTTTGCTATTTTTTAAAATTTAGTTGGATTGTAATAAAAGACTATGTC
GAACATGAAACTATTTGTTATGTTTTATTTGAACTATTTCTGCTAAGCTTGATTTTATTG
TACTTGGCCTCCGGCAAACGAGATTGGGCACAAGATGCGGTCACGCATTGCGTGCCGGGA
TGACACAAACCCATACCCGGGCGAACACTGCCCCATTACCACCCCAAAAGGACGAAATCC
AGACAAAATAGATGTTCGTTTGGGGTCGTGCGTTGGAGTTTCCGTAAGAGCATCTACAAC
CGGACCCTCGCACTCATCTCAAACTTTCGGGCAAGCCGCTTGATCCCTAACTTGTCATGA
AAATTTGACCCAACTCGACACATCAAACGGGTCTCAAACGTCCGGGCTGACCAGCACCAC
TCATATCTAGCCCAAATATAGGTCAGATATCGGCCGCGCGGGCACGCCCGCCACGTCGGA
TCCGATAGCATGACCCCATCGCAAATTGCACCAAATCCACCCGGCTAAACTGCTAGATCC
ATTTGCTATTTCCTATCTTCTTCCTCCTCCACGCCGTTCGTATCCTAGCTCCGTCACCGC
ATGCGCTCCTCCACCGTTCCTAGCCTCTGCCCCTCCAGCTCTAGCAGAGCAGTCTTCTGC
CCCGTCCTCGCCATGGAGAACGTCGTCGTCGACCCGGAAGACTCCACGGTATGTCTGGCA
ACTCTTTGTCCCCGCCTTACATTGGATGTGTTCGACATAGTCTCTGACCCAATTTTTTGT
GAAACTAATGATGGATTTCAATGCTTCGTTGGGCGAGGAGTATGGACCGACGCAGCTTGA
TCAAATGATTCCAGATGAGTTCTTCGGTTCATCAGATTCGGACGAAGAAGTGCACATGAT
CATGCTCATCACCATGCAAGAGGAAATGGATCAACAAGTGGAGCACATTTTCAATCTCAA
GGGCTCAATCTAAGGGAGAAGAGTGATCAATTGGGATATGGTATCCGGAGCAAAGCTACT
GCAGAAGGATTACTTTGCTCTGAACACAACTTTCCTGGATGATCCATGGTTTTGTCGTTG
TTTTTGCATGCGAAAACCATTATTTTTGTGCATTATGGATGCAGTGGAGGCACACGACAA
CTACTTCAAACTCACAAGGGGATTTCTTAGGTCAACTCTCTTTCTCAGCCAAGAAGAAGT
GTGCGGCTACTGTGAGAATGCTTGCACTTGGTACTGTGATAGATCCCGTTGGTGAGATGG
TCAGGATGGGGGAGAGCACATGCCTCAAGACTACTGCCAAGTTTGCTCGTGTTGTCGTCA
ACATGTTCGGAGCATAGTATCTCCAAATGTGAAGGACACAGAGAAGTTGTTGGCTATTGG
AGAGGCGAGAGGGTTCCTGGGAATGCTTGAATCAATTGATTGCATGCATTGGCAGTGGAA
GAACTACCCCAAAGGTTTGCGAGGAATGTATCAAGGTCACACCACAGAGGCCACCAACAT
ACTACAAGCGGTGGCATCACATGTATTATGGATTTGGCATGCTTTATTTGGAATGCCGGG
TTCTCATAACGACATCAACGTGCTTCAACGATCTCCGGTGTTCAGTAGGCTTTGCAATGG
GGAATCACTTCTGTGCAACTACACCATCCATGACAGAGACTACAACACGGGATACTATCT
TGCCGACGGCACATATCCTCAGTGGGATTCATTTGTGAAGACCATATCTGAACCATATGG
CAATAAACAAAAGCACTTCGCAACAATGAAGGAAGCAGCTAGGAAGCATGTGAAGAGGGC
TTTCAGAGTGCTGCAAGCTCGTTGGGGAGTTGATCGTGGAGCTGCAATGATGTGGGAGTT
CGAAACTTTGTGGCAGTTGATGTCTACTACACAACTTGTTCTTGTAGACTTGTGTTGGGC
CTCCAAGCACAGAGTTTCGTAGGACAGTAGAAAATTTCCCTCAAGTGGATGACCGAAGAT
TTATCAATCCGTGGGAGGTGTAAGAT