| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_1571825
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_15896 |
9 |
4138 bp |
None |
Available |
Available |
LOC_Os03g47840.1, FRAME:+2, EVALUE:2e-35, 13103.m05159 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_15896
Contig Sequence (8380 bp)
>contig_1571825 8380 assembly3_WGSMorex_rbca.fasta
GTCACCTGACGCGCCTGCCGTCACGAAAAATGAGGGTCTTTTCTCGCATTTCATATCGCA
TGTGGTCTTTTTTGACAATAACATTCGGCTAATGGTCTTTTTGAACAAAAATTCTATTTC
CATAACTCGTCCATTGGAGGCCACTCAGGGAGAAGAGCCTCAAGAAATCTGTGGAAGACT
TTATTGGTCAATGTCCCATTTGCCAATGAGCAAAACATGAGAATTGCTTGTCCCAGTAGC
TGACATGGCTTGGCAGCATATCTCTATGGATCTCATAGAGGGACTTTTAAATTCTCAAGG
GAAGGAAGTTATCCTAGTGGTAGTGGATCGATTCACAAAATATTCCGATTTTATCCAACT
CTCACACCCTTATTCAGTTCAGTCTGTGGCACGGGTATTTGTGGACAATATACTCAAGCT
ATCAATATACTTTAGCAGAGTATACTGGTATAACACTGCATATTATACAGCCATCAAAAT
GTGTCCATTTCAGGCCCTTTACGGATTTCCCCCTCCACTGATTTCTGAGCTAGCAATTCC
TGGCCCTGAAGATAGTGAAGCCTATGATTTCTTAACTTCCAAGCAAGCCATGTTGGATCA
ACTTAAGGAAAATTTGCTGCAAGCACAAAATAGGATGAAGAAATATGCTGGCTTGAAGAG
ATCTTTTGAGATTAGTGATATGGTGTACTTAAAAATGGCTCCCTACAGACTGTCTGCCTT
TGGGTTCAAAGGGGCCTTAAAACTACAAAACAAGTATTATGACCCATTTCTTGTTATCCA
AAGTGGGCAACAGAGCTTACAATTTGTTCCCTGACACAATCAACATACATCCTGTCTTCC
ATGTTAGTCAACTCAAGAAGCACCTGGGAAAGAAAGCAATCCCTAGCCCTCATTTACCTA
TGGTCAATTCTGATGGGACACTAAAAACAGAACCAGCTTTAGTGCTTCAGGTTCGACAGA
TACTAAGACACAACCTTCCAGTGGTGCAGTGGCTTATACAGTGGACAAATTTATCTCCAG
AAGACGGCACTTGGGAAGACACAGTTTCATCAAATACATGTTCCCAGCTTTCTTCAGCAC
GACTGCCGAAGCGTGGCGCCCATCATCTACTTCAACACCATGAGGGCACGTTGATTCTCA
GAGGGGAGCAATGTCAGGATAACTGAAGATGCAGCATTTACAGTTCTGAAGATGCTGGAT
GGACGTCCAGGATAGCTCCTATATTTACCGCATCGCCTCTGTCCGTCCACTACTACTTAC
CGTTATAACAGTACCGCGCGTGTAACTTGGTAAAATACCTCTCCTACTTAAGCCGGGATG
TGCTGTGATTTCCTTAGCATATTCTCTATGATTCATTCGCCTCAAGGCAAGACATACTCT
ATAGCTACAAGAAATACAGATATGGCCTCCTCTTTCGGCCGTGAACCCTAGCCAAATAAC
CCAAATCCTTCCGATTCCTTGTCTCGGTCGACTCTCAGTTCACTAGGACTCCTGACAATC
CTCCCTTTCCAAATCTGACAATGCCGAAATGTCTTAACTTCCATCATGATTGGCTCTGAT
ATGTTAGGATTAGTACAAATAGAAGATTCCAAGGAAATCACTCTGGCAGTTTGAAGATTA
TCCCCAGTGGACCATGCGGACCTAACATTCAAAAATAAACTGAATATAAGCGACCAAGAA
AAACATTTGGTCAATATACCTAATAATATAAAACAAAGCTATTGATCACGTCAAAATGAA
GGACATCTAGTTCATTCTTTCAGTTACTAAGATGTGGCAGAAAATAATATGTTGTCACTG
ACTCGCAGAAGAATATGAGAAACACCTTAATGTCAGCTGCCATACACAAGTGAATAGACT
CTTGAACTCCTAGGCGGCAGGATCCTGCAAAATGAGCTAGTTGTAAATTCTTGCAGATCA
GTGCAATTCTAAATGGTTCATGACTTATAAAGGTTGCTACTACGTGCCAGTAAAAATTAC
GATAATCACTATGCAAGAAATAGAAGAGAATGGTCTCATGCAAGCCAATAAATATGTTAG
TATCGCTTAAAATTTCGGTAGTAGCACATGCTTGTGCATGCAGAATTTCAATAAATGTTA
CAACATTCACTAAGCAAGAAATAAAAGGTAATGATCTCATGCATGTGGCAAAAATGTTAT
TATCACTAGAAATGTTATTATTGTTACTCCTTCTGCATTACTTATAAAAGGACTGTCCGG
TGCATGTAGCTCCCGCTTGCGCAGGGTCCGGCCACTTTGGGTCTTTTGCACACAGCATTT
GCCTACATTTCTGTAAGAGGATGTTTCCACGACTCGGACCCATGACCTCATGGACACAAG
GCAACAGCTTTACCGCTGCGGAAAGGCTTCTGCATTACTGCCATCAAAAAATTTAGGGAT
GTACAACAGTATTGCATTTTCTACAACTTTTACACGTAACTTTAGCATGTACTTGTTTGA
GATTTGAGTAATAACTATCCAGACAAGCAGTTTACTGGAAACAAATTGAATACAAAGGAC
AAAAAGGCAGAGAGAGAGAGAGCAATAATCAGAAATAAATAGAGTATGAGTGCCAGTATA
ACTAGTAATAGGCACGCATGCAACCGCACAGCAATACTATAGCAAGTGTCAACCACTATA
CGCAACATCAAGGTAAAAAGCTGAGCTATTGAAATAATAATAACCCATCAACAGCAGTGG
CTAAAGTCATAAAATGCCGGTTTGCTAGTTACCTTTATCCCCACAATATACCAAGCATAA
TAAGATTATCTCCCGGTAATACCCAGTCAGCCCTCTGGTCCTCATTTCAGACATCACTCA
TCTCACAAGGTCTAAAGGCAACATGGTAAAGGCTTAGCAAATAGCAACACACATGTCTTC
AATGAGTTTCTTGAACTCACCAGCCTACAACAGTAATTGATTAATTAGTTAGTTGCAACA
ACATGGTAAAGGCTTGAAGTTACGTTCTCACAAGTCATCGGGTTGCTTTAAACCATCCGT
GTCAATCCAACTCGTGCATGACTCCAAAATAAGTTCAGCAGCTCCTTTCCAGTTTACATG
AACCTCGGCCACCCTCCAAAGAGAAAAGAAAAAACATTACTTACAGGGGGGAGAAAACAC
ATTAGCAGCCAATTGAGCAGATATTCTTTTATGGTCTATGACTCTTAATATTAATTTCTC
AAAATAATGTGTTCAAGCCTTCAAGAAAGCAAGAAAAATATACATGGTTACGCATAATTG
TGTGTAGTACATGCTACAGGCACAAGTGTGAATCGCAGTGTGAAACAAATATAACAAATG
AAGGGCACTGAGATATAATCATCCGGAGGATCCATCTTCTCTCCAAAGTATGCCTCAACA
ATAGTCATCTTAACAGTGACAATGAAGAAATGGCAAAGGAGTCAAGGCCTAAGCATATTT
GAGAAATCACAAATCCTACTGCAGAATTCCATGAATTAAGACGAGGACAATACTACAAAA
ATAGCTTTCCACCTAATTTTAAGTTAATGTTCCAGTGTTGTCACTGGAAATTGTTGTTGC
AGACCCATTGTCTCACATGCGGAAAGTATATTGACCTATAATATAAGGTTCAGAGATTGT
ATTAGTCCAGCTGTTAGGACAAGTAATACACAACACAAGAAAGCAATGGGCCTGACAAAA
AAGTATATTGACCTATAACAAATCTTTATCCCTCATCATTTTGCACATCGAAAAGGTGAG
CCTGACAAAAAATATGCAGTGTAACAGGGTAAGTGATTGCTAGTATGTTGTGAGAAAATT
ACACATTAAATTTATGCTTACGTCTATGTGACAGCGAATCGTGGTCCTTTGGGAACAGAC
ACAACCACAATTGTGACCTAATTACCTCCCAAGATGGTAAGACAACAGAAACTGTAAAAA
CTAAATCAGCAGCCATGAATACTAAACCGAATACATACTGTCACTGTGAAGATTTTAACT
AATACGCGTATTGCCGCACCAACATATGAACTCATGCGTAGGCTAAATTTACAGGATCAA
ACCCCATTCAGTGTTAATACCATAATGTTCTGATATGATTGCCAAGCAATACCCATTCAG
TGTTAATACCACCAGCGGTCACCTAGGTAATATACAGTAGATTGCCATGATCAATGTTCT
ATTGCAATACAAACCTCGCTAGCTTGCCCTCTATCATGACAGTCTATATTAATATAAATA
TCTAGTACCACATACATATGTTACGACAACGCCCAAAAATAACTGCACTCAGGCTGACTT
AGGTTGGCCGAAAAGAGCCTAGCCAGCCCACCATGTGACAAAAAAGATGCCACCCTTCTT
CAATACTACATTTCAGGAGCAGAATTACACATGTGAACCATAAGACTCGCCTAAGTTCCA
CATTTCAGTATATGAGATGGGCATAAAGTAAATTTCAAAATATGGAATTTGACATCAGCA
AATTTTATTTGACAACCATAGACATCCAAGATCAGCAGATATTAACAACAGTAATAGCAT
CAAGATACCATCTAATACTTTCAGTAAGTAAAATGGTTTCAAGAGAAATCAAATTAACAA
CTTAAATCTATTATGTCACCACAGGTAAAATATGAACAGCCAAGGTTACTGCACTGCTAC
TTCACTTCACAAACTACAAAAGATTTCGGAAGCTGAAAGTAGCTATACATTTTCTCCAAT
TGGTAGGTACAGACAGAACGAGCAGCCTTGTACCATAGCCAGCCATGCAACATCAGAAAC
AGTGACTTCTGGTCCTTGTTTACTTTCTCCCGTCATGGTCGATTCATCTATGGAGAAGAA
GTGGCCACTGTAAGGACTCCATCAGCAGGTACCTAACAAGAAAATACTCCCTCCGTCCAA
AAATTCTTGTCTTAGGTTTGTCTAGAAATGGATGTATCTAAGTACTAAAACATGACTAGA
TACATTCATATTTAAACAAATCTAAGACAAGAATTTAGGGACGGAGGGAGTAGATTAGAG
CCTTATATTACTAAACTGCTTGCAGACACTTGTTTCAAAATAAAAAATAACAGCATGTAC
CTGGTCACCAATCTTGAGGGGCACTACATCTCCAGCAACAAGATCTTAAATTGATACCTT
GATTCGCCTTCCACCTCATAAAGCCTGAATGAGAACAACTGAGACCATATTTGGGGAAGA
ATAAACAATTTATAGCAAGACAAGTCTACAATTTTAACCTCCAAATGAATGTTCCGTTTC
TCCTCATTCAACTTTTGCAACTGCAACGATTGCTTGTAGTCACTAGTAGCTAGACAACAT
AGTGAACCGTTGATAATGAATGCTAAGTAACATGTCTAAGATAACTGCAAAGTTTCAGAA
AAGCATGTTGCGACTATATCACTTTCAAACATTTTTTTATTTTCTTATTAGGCACATATC
TATACTGTGACGGAATTTAGACACTAACAAATTTAAGTTAAAAAGGACAGACAACCAAAA
GCAAGAAAGATGATTATGGTGGCATGCTGCAACAAAAATAACTATGACTAGAGCAAAGCC
TTCTTTCATCCCCTACAAACCAGAAAAAGCTGTAATTGGAGTTATACACCCATAGCCAGT
CATGAAAATTTCATACAGTACAAGGAATGATCCTCCACCAACATGCGAAACACGAGGAGA
TTAACCAGATACAGTCTGAATTCCTTGCAAGCAACTTAGGAAGTTCCTACAAGCTACATC
CACAAAGATCCATTACAGCACGACGTTGTTTTCCTGGTCCTCGGCACTACTGGTCCTGCG
CGCCTCGTCAGCCAATTCGTGGGCAGCATGCTTCACCATGCTCTCGAATTCGGCCTTGAA
CCCATCCATCCTCGCCTTGGCGTCTTCCTCGGCTTTGGCGTCGGCTTCGAAACCACGCAC
CATGTGCACCTTCGCCATGTGCACCGCCCCGACAGCTGTGCTGATGGACATCAACCCTGA
ACCATGTTTTAGGTATCTGGATCTGCCTGTGGTAGTGGCGGCGAAGGAGGGCGGAGGACG
GGGAGCGAGTGGTGGCTGCGGCGGCGAGGTCGCTGGAGAGGGAGGTGGCCGCGAGGTGGC
GGGGGAGGGAGGTGGCAGCGCGGCGCACTAGTGCGGCCATGGAGCACGAGCTGCAGAGAC
GCAGGCGAGGAGAGCCCGAGCCGGCACGGGAGAGGGGAAAAGGTGGGACCGTGGGAGTGC
TCAAAGGGTTAGGTTATTCCGTTATTGTATAGCTCTGGCCAAACGGGCCGGAGTAACCAG
GTCAGTCATGGGCCGGGAACGGCTGGGCCGGAGTAACCAGGTCAGTCATGGGCCGGGAAC
GGCTGGGCACGGCACGCGACACGCCTTAGTCATGTAGGCTGGACACGCGGACATGCATGA
CATGATCCGTCTATTTTTCTTATATTTTTTTAATATATATATACATATTTAAAATACAGC
TTAATAGTCTTAAAAGTAAGGTTAAAAATATGTAGCCCATAACGTGTCGATCCGTTCAGC
AATCAGGTCGTGCATGGGCCTGAAAGCGCAGCCCACGGACTAGCACGGCACGACCCGGTT
ACTAAACATGACTGGATGGGCCGGGCCAGCCCATTCGGCCTAAGTCTGGGTTAGTTTTTT
TTTCTTTTGAGACTTGGGTTTGGATGGGGAAAGGAGCTCACGTACAACGGCCTTGGACCG
GTCGAGATGCGTGCCGGGGCTCCTCTGTTTGTTTTCTTTCTTTTTTCTTTTGTTTTCTTC
TTTATTGATTCTTTAAGAGTGTTCGGATTTGAAGAAAAAAAGTGTATAATTTTTAAAATG
TTCACAAATTTAGAAAAAAGTTCACCATTTAAAATAAGCATTTTTTGAATTTTGATGCAC
ATTTTTTTAAATTATTATGAAGATTTTTTGTACTTTGCTGTAAAAAATGGATTTTGGATG
AATATTTTTGTACCTTATTAACAAATAAAAATAAAACTTACAATTTTATGAATTTGATGA
AACGGAGGAAGGGGGCCTAGGCGGCAACTCGCGCGCCAAATAGGATAAGTTGTAGTCTGA
ACGAGACAACATTACCCTCCACGAATCTCCAACAACTTTTTTTTGAATGGGCCGATACAA
CTACTTTTGCTGTATTAGCTCGTACGAGTATGGGTTGTGGGTTGTGGTAGTGATGGCAGC
TTTCCTGGACGTAGTGGGTGGGTTGTGGTAGTGGTGGCGGCGTTCCCGGAGGCACTGGGT
TACATAGACGCAAGGGTCGTATGTTTCTGCCAAACCCCATTTGACACCTTTAGTGCACGT
TACTTTCGTTTTCGCAAATGGGCGTACCCCTCACACACCCCACCCCCCGAGTTCGGTTGG
TTGTTTACCCTTTTTTTGTTTAGAGGGAAAATAATTGTATGTGGGAGTGATTTGAAGGCT
GGAATTCTAGATCTGAAAAGAGCTACATCAAAGATAGCTATTCTCCGGAGTTCCAGATGA
CCTGAAAACTTACAAAGTTTTGTTTTGAAACATATAGAAAATATTGGAAGGAGAATATCC
CAGAGATGACCCTCTATGGGCCTACAAGCTCAAGGGGCACGCTATGTGAGCTTGTGGGGC
CCACGGAGGTCCAATAATGCCATCTTGCGCTTTGTGAAGACATTTTCCCTAGGGAAAAAA
TTCAAAAGAAGACTCTCGAGACGAAGCATCGCAGTCTCGAGGCAGAACTTGGACACGAGC
GCTTTTGCTCTTCGACGGAGCTATTCCGTCGTCGGGGGTGATTCCCTCTAAGATGGGGAA
ATCAAAACCATCATCATCACCAACGCTCCTCTCACCGTGGGAGGACTCTTCTCCATCAAC
ATGTTCAGCACCACTGTCTCATCTCCAAACCCTAGTTCATCTCTTGTGTCTGATCTTTGG
CTCAAACCTCGGATTGGTACATGTGGGTTGCTAGTAGTGTTGATTACATCTTTTAGTTGA
TGCTAGTTGGTGTATTTGATGGAATATTATATGTTCATATTGTTGATCATATATCTCCTC
GAATCATGTACATGAGTATGATTTGTGAGTAGTTCCATTTATTCTTGAGGATGGAAGAAG
TCTTGTTATAAGTAATCATGTGAAGTTGGTTTTCGTTCAATGTTTCGATGATGTGCTGTG
TTATTCTTCCTCTAGTGGTGTTGTATGAACATCGGGCCAAGGGGGAGGTATTACGGGACA
CTTGTAGAGAATAACTTGTTGGAAACCGCTTGTCGATTCCTTATGCTCCTCGTTGGGTTC
GACACTCTTGCTTATCAAAATGACTATGATTGATCTCCTATACTTGTGGGTCATCAACAC
TATTTTATGGCACCGTTGTTGGGTGTTGGAAATATGCCCTAGNNNNNNNNNTAAATTGGT
TATTATCATATTTACTTGTTCATGACAATTGTTTATTATC
