morexGenes - Barley RNA-seq Database

Contig contig_1571791
Source Contig contig_1571791
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1571791 (6988 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1571791

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_15885	1	742 bp	MLOC_15885.1	Available	Available	None
CDS Structure of MLOC_15885

Contig Sequence (6988 bp)

>contig_1571791 6988 assembly3_WGSMorex_rbca.fasta
TACGAGTCCCGGCTAAGGTAAGGCTGCAGCCGTGGGCATAACCGTGCGTGAGACCGCAAC
GGGATGTGATGTGTTACAGGNNNNNNNNNNNNNNNTTAGGATCGGGGTCCCGACATATAC
CTACACCAAACCTTCACGTTTAACACTTAAAACTGAAGGGAGACATATTATTCCCTTCAG
ACAAGACACATAAGCAAGTTTTTTCATATCTTGTGCTCAATTTGTATGTGAATTGCTTCA
TATAACTCAGAAAATTCTAAATAGAACTTCCCTGGATGTTTGGACATGAAAGTCGGTAAG
CTTAGAGAAGGTGAACATGAAAAATCCACTGTAAACGGGGATGGCGACAACGAGGGGCTT
GGCGATCTGCTTGCTTTCTTTTGTTGAAAGAGAGAAGGTAAAAGTTGATGTTTTACTTCT
GTTTGCTTGAGACAAACGAAACGATGAACTGTGCTCTCCAGAAATATTTTGTTGATATGT
CTAAATATGACCAAATTTTGCATGTTTTTTATGTTGGTATATGTATGAGGTTGATCTATT
TATATTTTGAGTGAATTTGAAATATGTAGGTTGAACCAAAGTCCTGTTTGTACATATGAA
GTTGCACCATTTCCCCCGGTTACTTAATCAATCATTTGACATCGAGTTCAAAAGGAACAG
TGAATTTCATACGTTTGGCATAGGAAAGTGCATATCCGATATACTTTGACAAAAAAATTG
TGAATGTCCAGAACCACACTCGTCTTCTATATTTTTGGTAGAACTAACACTTAAAAGAAA
ATAAGTTTCATTGACAAGGTCACACACTATAGTCTCAGACTTTCGAACCTTTGTTTGCAT
GAAGTTCATATATTGTCGTCTGGTACATGCAATAACTTTGAGAAAAATCACACATGGTCA
GAACCGCTATTTCATGGAGTAAAAAATCAAAAACAATTATACAATCTGAAAATTGTGCAA
GCACCTATAAAATTTTGCAAGCAACAAAAATAACAATATTGATGCTCAAACTTGCGTGCA
TTTTTAGCACAATTTCTGTTTTGTTTGTATTGAACTCCTTGGATATCATTTGGCCACCAA
TTGTGCAGCCAGCTATAAAATTTAGTCATAACCGAAGCCACAAGTTTCAGATTTTTTAGA
TTTGGTTTGCTATTTTTCGAGTTTACTGTTCAGAGTGGGTGTAGTTTGCCTAGGTGTAAC
CACAACTTTTCCTGAAGGACAGGGTGGTGAATGCCATCAGAATGATGGTGTTGTGAACTA
ACACATCAGTATGTTCCAAAATGTATTTTGTCAGTATAGTAGGCATACAAGAAATACAGT
GAATCGTATAAGAATTTTATCATTTACAATTTTATCATTTACAATTTTATCTTCCGTAGA
CTTTTTTCCCAGGACATGTGATTTATTGAAGACAATCATATGGGGATTAATTAGTGACTA
TAAATTTACATATAATACATACATATGATATATGTCGTTTGATACTTTGATAGATGAGTT
TCCATCTTTTGAACATGTCAAAAACTTCATACCTTAATAGAACACGAGAAGTTGGTCATA
AATGATAGAGCAAAAAGTTAAGCATATGTTATTGGATAAGTGTCCGATTTTGTTTATTCG
TTTGATGCTCCTGCAGGCTCAGTAAAGTGAATGACTGGAAGCCTTTAAAGATAGCTAATC
AAACCATATCTAGGAAATCAGTGATCCAACAATCTGCAATGAGGGTGATCTGAATATGCC
ATGTAGCATTTCTGGGACAAAAATAGGGCCATATTTCATCCAATACAATATCATTATGAG
GTTTGCACGATCTTATTGTTCAAGATATTTTGTTTGCAATTAAAAAAAAAAGAATATAAA
ATAGTGGTTTCACAAGCTTATCCCCGCCCCCTTTCATGTCTGTCCCGACCGGCAGCAGTT
GAGTCTCCCCATCCCTCCTCAACTTCCCCGGTCATCGGCCCCGAATGTATGAGGCAGAAA
CTCGTCCCACGTACGGTTCGGAGGCCGAGCCCCACCCCTGCAATAATGGTAAACTTCATA
CGTGGAAGTAAAATGTAAACTAGAGCTGTGCGTACATGAACTATAAACAAACCTGCTCAA
GGTATGAACGATTGTAGCGGTTCTAAAAAAAATCAGTTTTCAGAAAAGCGTAAAATGAGT
TACAGTCCCTGTACTGCTCTACATGAGTAGTATGTAAAGTAGGCACACAACACAAGCAAT
ATAATTTGACACAATTAGTCCAAAACACAGAACACAGAAGATGCAGATCCAGATGCACAT
ACAACATATTTTTACAAAAGGCAGCGAAACATGCATATATCTAACTAGTCTAGGTGCATA
CAAAACAGGTCGTCAGTGCTGATTGAACCAAGGGTACGCAACAAGAACTGAAGTAAACAA
AAGCATTGCACTGTTTATGATCACGAATCTGAAGCAAAATGTGAGATAAAATCACAATGC
AGCCGATATTTATTAATTATTCCCGGATAGTAAAATAGTCGATTGAAATCGGCAGCTTAT
ATGTGTGGCTCAGGGACTTGGCGGGGGTGGCGGCACATCACCTTCCACCCCCTCGGTATC
TATATCCATCTCTTGTGAGGCCACGGGAGCAGGATCGATGGTAGGCATGGGTAGCATGGC
AAGCTCATCCAGTGCTGCCAAGATCTCTGCGTGGGGCATTGGGGGAACAATCTGTAGTTC
CATGTCGAGCAGCGCTCCAATGGTTTCCACCCTTTGCATAAGTGGGTCCGCATGAATTTG
ACCCTGTCTGTATGCCCAAGCCAATACGTCTCCTGGATCTGGGTGTTCGTGATCAACCGC
TGGCACACTAGACAACGGGTATTAGGAATCGCAAATGTTGCCTGGTAAGTAAAAAACAAT
GGTGAAGGAGAAACTTGAGCACCCAGGGGCAAACCTGTCGACCTCAACGTTGACGGCATC
AGGGAGTACAACCTCTGGATTGTCGGCGGCAGCTGCAGCATCGGGCCGTGCCTTATTTGG
AGAATTATCCATCACAAAGCTATTACGTATATGGGATGGATCATAGGATAAGTAAATCAA
GCAGCAGGAACAAATAATAAGAACAAAAATGAAATCTAAGGCACATTACGATAGGTAGAT
AACCTGGACACTCCCGTGACCGAGACGAAAAGCTGGATGATGCAGATCAAAGACAGAAAC
ACCACCGTTGTAGCAGCTAATGCGCTAGCGCTCTGTGGTCTCATGGAACCTTGCAAGGTT
AGGGGTTCTGGGTTGAGAAATGGAACATGGATATTTATACTAGAAAATCAAATCGAGCAC
GAAAAGAAAAGGAGATTGCCAAGGCAGAAACGCAACGCATTTAAAAGCAATTTCTAGTAC
CAAATAAAGCACATAATTTAGCACATTTAATACCGGTGGCATATATGTTTTAAATGCTGC
TCGCCGACTTGATGCTAGCTAGGTCATTTAATACAATATATATCTTTCATATTCCACATA
GCCATGCAACCTGTTATATCTTCTTACAAAGATCGCATGGTGTGGAGACGCTCCGAATAC
ACATTTCTAGGAGAATGAGGGGCGACTCCTCTCAGTTTCATAAAAAAAGGGGTGACTGCT
CTACCGAATGCGCGGGGTTGCCATCGGCGTTGAGGCTGCTGACGCGCCGGCTGACTCCAT
CACCTTCCTCACCGCCACTTCCGACCCCGCCGTACTCCCCGGTGGGTCTGCGGCCCTTGG
TGGCATCCCTGTCGGACGCTCCAGCAGCAAGGCCTTCGTTTTAGGCGTTTGTTACTGTAC
ATTTTGCAAACGGGGGACTAAAGCCCTTCAAGCTGGTCCGACCCGTTTAGCTATTTTTAC
TTTACTTAATTTCATGAACTTTTTCAAAATCAATGAAGTTGTTCTAAAAAACTCCATTCC
AATATTTGTTTTTTAAAATCAAAGAACCTTTTTTCACAATCAATGGTTCAAAAAAAAGAT
GAATTTTACAAAAAGTTCTGCAAAATTCATGAACTGTTTTTCAAATTCAAATAACCTTTT
TTTGAAAATAGATGAACTTTTTTTCAAAATCAGTTAACAATTTTCAAGTTTGATAATTTT
TTTTCTCAATTTCATGAATTTTTTGAAAATCCATGAAGTTTTTGAGTTCACGGATTTTTT
ATCCTTTTTTGGTGATTCTTTTCTGTTTTTTTTCTTAAATATGAACTTGTATATGAGCCG
GCCCACTAGCGCCGGCTAGTGGGCGACAGGTAGCTTCCCTGATGGTTGAAGCGCTGAATA
GTAGCTCCCCTAGCTGCGAGCCGCTCGCTCGTTGTCATCCAACCTCAAAGTATTATTTCC
TAAGCCCATGGCCCAGCCTTCTTGGCATGCATCATCTCCTTTGTTCCTGGCCTGGTAAAT
CTAGATCACTATGCACTCACGCGCTCCCAGCTTTTAAACGCAGTGCACTACATGGAAGAC
AACGTAAGACGAGTAATACAAATTAGCCGATGAAGGCCAAATCCAAGTGACAACTCTTTA
TCAAATGCTACACTCACTAAGGATGACTCAGCTTATCCTGTGTGAGCAAAGCAACGTAAG
CCGAGTGTTATTTGTCACAAACTTGGTAAAAAGTTTGACGAGTACAAAATCAACAACTCA
CGGCAACATAAAGGTGTATGACGGGCGACCGACAAAAAATAGAGAGTAAGATGAGCGCTG
ACGCTCGGTTTCCATATCAGCCAAGAGTCAACTAGAGAGCGGCATGTATCCACAAAATAA
GCGGGGTATCTAACTTGGATGCACACTGAGTGTCGATGTGTGGCTTCATGTCCGCCATAG
AAGACGAGTATCACGTAGGGGGCGTGCATGACATAGGTATAGGCCAACCTTAGCACTCGA
CTTATAAATACAACATGTTGCGTGATTTGGTTATGTAGTCTCTAGATCATGCCATATGTC
CCATAGGCCTAGTGTTGCTCTCGTTTTATCCGTATAAGCCGAGTGTAGCGCTTGGTTTAC
TCTCCAACATGTTTTTATTTGATTTGCTTGTCGGACCATCCCGACAATTTGGCACATATA
TTCTAGGAAGCACCACTTCTGCAAGTTATAATAATAAGCACATATTCATAGAAGGACATA
ACAGTCTAATGATCATATACCATATTTATATATAGACTCATAGAATCACATACAAATGGT
CCGTTCGATCAACAAGCATACAAACAAACGTAAGTAATATAAGGATATCATTGCCCACAA
CCACCATACACTCTCGGAGTAGAAACTGAACTCTGCGGACATGAGCTCTAGGGTTGTTGT
GGAGCAGGAGTGGTATGCTTCGTCATAGTTAATACTTTGCGAGGGCATACACACATATTT
TGTTAGCATTGTAGCAAACAATTTCATTTAAGAATGGTGTTGGCTATGTATCATAAGAAA
GAACTAACATTCGTCCTAATGTACTGGCCTTGCATATGATGACACCACCACCACAATGGT
GAAGAACTGAACGAAGATTATCAAGTTCTTTGGCCCACTTAACTCAATCTAACATGCATC
CTTACCTACGCCAACATTGTTCCTCTCTTTGAGCACGAACTCGTAGTAGTCATCCTCTGT
CTCCTCTCTATCTCTAAACCCTTTATAGAACATATTCTCTTTAACCATTCAATTGTTCAA
TGCATGCCATGAACATTAGACTCTTGAACATATTCTCTTTAACCATTCACTTGTTCAATG
CATGCCATGAACATTAGACTCTCTTTAACCCTCAGTATCCCACGTACCACATTTTCACCT
ACAAAGAAAGAAGAAAAAGATTTCAACAAGAAGGATAATGTCTACTACACAACTTTATTC
TTGTTGGACCTCCAAGTTTAGAGTTTTTACGAAAACAACAAATTTCCCTCAATTGGATGA
CCTATCCGTGGGAGGTGTATGATGAAGATGGTCTCTCTCAAACAACTCTTCAATCAAATA
CAAGCAATCTCTTGTCTCCCCAACACCACAATACAATGGTAAATTGTATATGTGCAATAG
TTCGACGAAGGAGTGGTGATACAAGTACAATATGGATCATATATATAGGTTTATTATAAT
CTGAAAATATATAAAAAGCAAGGTAACGAGTAGTAAACAACGAGAAAAACAATTTACCAA
TGCTTGGAAATAGTGCCTAGGGTTCATACTTTCACTAGTGCAATCTCTCAACATTGCTAA
CTTAATTGAATCATATAACAATCCCTCAACGTGCGACAAAGAATNNNNNNNNNGTTCCTA
TCTAGCGGAGAACATAAGGTGAAATAGTTGTAGGTAGTAAAACTACCTCAAAGTAATCAT
TTTGATCAATCTATTGAGCCATCCCTGTAAGTCTCACAAACAGCCCTAGAGTTCATACTA
GAATAACACATATGATACGCATCAACCAACACTAACGTCACCTAGATACTCCAATGTCAC
CACAAGTATACGTGAGGTGATTAATTGACATGCATCAACCTATTTCAGATTCATGATATT
TAATACAACACAAAGAACTTCAAAAAGTACCCCACGATTTCTATTGAAGAAAGTAGGACG
AAAACGTGCATCAACCTATGCGCATAGATCAACCCAATGTCACAAGATTCCGCAAGTTGA
TGACCATAACATATATAAATTGACTCAGTCGAATACCCCATCATCACCACGGGTATCCAC
ATGAAAGAAATAAATCAAGTGTTCTCAAATCCAACCCAACATAACAAAACCTCAAAGGGA
AATACTCAATTCATCACATCAATATAGCAAGGTAAGAACACCATATGATTCAACTATGCT
AACAAAGCGCGCGATACATCAAGATCATGCCATCACAAAAAAACAAGAGAGAGAGAGAGT
AGTAGGGAGGGAGGGAGGAACGGAGAGAGAGAGAGAGAGAGNNNNNNNNNNNNNGGGAGA
GAGAGAGAGGGGGGGGGTGTAAGTGCGTGTATTGTGTGTGATACGCGGTGATTAGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGG