| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
 |
Predicted Genes from contig_1571499
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_15771 |
1 |
1383 bp |
MLOC_15771.1 |
Available |
Available |
LOC_Os01g16540.1, FRAME:+1, EVALUE:1e-40, 13101.m01849 protein NEDD8-activating enzyme E1 catalytic subunit, putative, expressed |
| MLOC_15772 |
1 |
931 bp |
MLOC_15772.1 |
Available |
Available |
LOC_Os02g16090.1, FRAME:-1, EVALUE:2e-85, 13102.m01803 protein retrotransposon protein, putative, LINE subclass |
CDS Structure of MLOC_15771
CDS Structure of MLOC_15772
Contig Sequence (5009 bp)
>contig_1571499 5009 assembly3_WGSMorex_rbca.fasta
TTCACTAGAGAACTACATACGGATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTTGCTCTGTATGTAGTCCCTTAGTGAANNNNNNNNNNNNNNNNATATTTAGGAATGGAG
GGAGTATTATATTCTGAACAACGAAAAAGCTGAAAAGAAAACACTTTCTCACTGACAGAC
TAGGCAGTTTAATACCCAGGTTTAGGTTCCTAGTTGCTGCATCACACATAATTCTAAAAT
GTGGCACTAAATAGAGGATGTACTGTTGTGCATAGAGAGCCTGTGTGCCTGTAGATTTCT
GAATCCTTTCCACTTATCATGGACAGTTCATCAAGATGCTTGAGGAGCACCCCAAACTGC
TGATGTCAAAAGCTAGCGTGACGCACGGAGGCAACAATCTGTACATGCAGTCGCCAGAAG
TTCTTGAGCAGATGACAAGGCAAAACCTGAGCATCCCCATGTTTGAGCTCCTTAAAGGAA
CCCCATTTGCTACGGTGCATGTTAGTGGTATGGCGGAGAGCAATGGGAAGAAAGTGTCAT
CGCTGAGGAAGCTGCGTGTAGCCTTCAAGGGCGTCGAGGAAGCTTCGAAGATGGATACAA
CTGAGAGCTCGTGATATCATCGTTGTTGCTGCCTATGCCCTTCTTAGATAATATTAACCT
CCCATTTCGTTGAGAGAGTAGTGTATTTCGAAGCGGATGAAATGGAAGCTGAAATTTACA
CTTGGCACGGTCTCTTCGGGGTCAACTTAAATATACAACCTCTGTCTGGAATTAACTGTC
ACTTAAACAAGTGTCAGGAGTATTTGGCAAAACATGGTAGTTTGTGTAGTATGGCTTGTA
TCTAAGTGGTGAACTGGTCATGCTATTTTACCAGATCTGGTTTAAGATGCAACAGTTTTG
CCGAGAAGATAGTTCCTGGCATGATCTCATAAAATAGTTTTGAGTGCCAAAATTGACAGT
TCAGTTCTGCTTCTGCAGTTAAATGCCAAAAATATAACTACATGTCTAATTCATACACTA
ATCTCATAAAATCATTCAAATCGAGCCTAGAGAAATCCTTGCATCTCGGACAAGCCCTTT
CCTTGATGTGCAACCGTTTCAGGGTCATGGCTTAAACGGACCGATGATGCCAAGGCCATG
TCAAGGTCTTAACCTCAGATCGACAGGTTCTATTGCACTGCAAAGTTTTTTTTAAAGCCG
GGCAAAAGATTTGCCACATATATTAATTAAGAAGGAGAGGCCAAAGCTGAGATTAATGAT
GTGTTACATGCGTGCCCCAAAAGAAAGAATTACTCTCTCGACAAAGATTGAACTCAACTT
TTTTGCTCCCGCCAAAACCCAAAGGCTCGCGTCACTTTTGATGATACCGAAGACGACCGA
AGGTGGAGCCAACTTGTGACGGAAGACCTGTGCATTGCGTTCATTCCAGATGGTCCACGA
AGTTAACATGGCAAGAGAGGCCACTGCTTTCGTGTTTGGCATGGATTGATCGGATATACG
CATCCACCACTCCTTGGCTGACGGAAGAGCTTGCCATTCGCCCGAGTCGATTGAGTCTAG
GTGCAGTACCGACATTGGAAAAGAAGGTGGTCAATCGTCTTCTGGACCTGCTTGCATAGA
GAACATAGATCACAATTGGGCCAACCACGCTTAGCAAGCCCGTCAGCTGTCCAGACTCTA
TTTTGGGTGGCAAGCCAGGCAAAAAACTTGACCTTTAGTGGAGCCCAAACCTTCCAGATC
GAGTGCTCCATAGAGGACCGAATCATGCCGTTAAACTGGGCGTTGTACGCGGACTCCGCA
GAGTAGAGTCCGCTTGCAGTGAGCTTACACATGATCTCGTCCTCCGTATCATGCTGAAGG
TGGAAGCCACGAAGATAGGACAAGAGTTGAAGAAATTCTCGAAAGTGTGCAATGGAGAAG
TCTGCAATCATCTTGATCTTGAAAATCCATGCATCACCATCCAAAGCATCCCTGATTTTC
CAATTATTCTTCATTGAGGCCTCGTAAATTCGTGGAGCGATATCCTTGGGCTTTCGGTTT
TGCACCCACGGCGGGTCCCAAAATGAGGTGCGGGTGCTGTTGCCGACAGTGATGGTGGTG
AAAGAGTAGAATAGGTCATAATCCTTGATGTCACACGGGTTTTCCATCCCCACCCATAAC
TTGGTTGGTCCTTCCACTCGAACCATAGCTAGCGCAATTGAAGGGCCCTGGAGAATTTTT
CAGTGTTATGGACGCCGAGGCCCCCATATGCCAGAGGACGACAAACCGAGTCCCAATTGA
CCTTGCACTTGGCACCCGAAGTAGTCTCCATTCCCGCCCACAAAATCGCTCGTTCAAGTT
TATTAAGGTTGTTGAGAGTACTCTGCGGGATAATTAGCAGAGTGATGAAGTACACCGCGA
GAGAGGTCAAGACTGATTTGACAAGTGCCATGCGCCCAATCTTGATGATGATCTTCCCAT
CCCAGGTGACCAGCTTGGGCGCTCCCTTGTCCTCAAGAAACTGGAAATCCTCTTTCCAGA
GTTGCCAGGCTGAAAGCGGGAGGCCCAAGTACTTGATAGGAAAAGCAGCCCCAGCCGCAG
GTAAGCTGTGAGTGATGTGTGTCAGGTTGGTGCCCCCACACTGGATCGGGACAAAAGAGC
ATTTTTTTAAGTTGGTGCACAATCCCATGACGCTCCCAAAAACTCATAGAATGTTGGATA
GGTTATCAATATCACTCTTGACACGTGCCATAAACACCGCAGCGTTATCCACATATAGTG
AAGTTCGAACAACCACCCCATGGCCGCGGATCTTGTGCAACAATCTGTTCCTCGTTGCGG
CCTCCAATATTATGTGGAGCGGGTCCATAGCAAGGATGAAAAGCAGGGGAGGCAGTGGGT
CGCCCTGACAAAGCCCATGACCGTGGATGATCGGCTTGCCGACAACCCCGTTGAGCAAGA
CGCGCGAAGATGAAGTGCACAAAAGGGCGGCGATCCATTCACAAAAGATGACAAGGAACC
CCATGCATTGGAGCAGGTCTAGCATGTATTCCCATCTGACCGAGTCGAAGGCCTTGCGAA
TGTCAAGCTTGAAAAGGAGCATGGGCATCTTGCACTTGTGGAGACGACACACCAAGTTTC
ACACGTGCATGAAATTGTCGTGGATACTTATTGTTTTGATAAAGGCGCTCTAGGCGTGCG
AGATGAGAGAGTGAATGTGCCCGGCCAATCTGAAGGTCAAGACTTTGGCAACAATTTTTT
TCCACCGCATGAATGAAACTAATGGGGCGGTAGTCCGAAATCTCCTCAGCTCCATCTTTC
TTTGGCAAAAGAGCGATGTTGGCAGAGTATAGCCTCTGAAAATTGGCGGTGCGTAGACTG
CCAAAGAGGACAACAACCCTCATAATATCATCTTTGATAATGCTCCAGCATTTACGAAAA
AATAGTCCCGTGAACCCATCCGACCCTGGTGCCTTATAGCATGGCATTTGATGAATGGCA
CCCCAGACCTCCTTAACAGACATGGGCTCCCCAAGGGAGGCCAGATCATAAGATTCCAGG
CCTAGCTCCTCCCAGTTAAAGTCGTTTGCCCTAGGGCTTCCTTTTCCCATCACTTGACAG
AAGTGCGCGTGAATGATTTCCTCCTTCTGCATGTGGTCGGTCACCCAACCCTGCTTGTGC
TTGATCCGATGAATGTGGTTTTCTCTACACCTTGCATTAACTCGTCGGTGAAAGAATTTG
GTGTTTGCATCTCCCTCCTGAAGGTTGGAGATTCATGCACTTTGCTTCTTACGCGCACGC
TCGAGAACGACCAGGCTAATGACCCTTCTTTTAAGCTTAGTCCTCAGATCACTCTCATCA
TTTGAGAGTTGACGTTGCTCCTGGGCGATGTCGAGGTGCAGGATGACCCATAGGGCAGCA
TGGTGCTGTACCTTCGCATTGGAAAACAGCTTTCGACTCCATGTCGCAAGGCGATTGCGA
GTGGTTTTGAGCTTGTGATGAAGAACTTGACATGGCTCAGTGTGGTTGGAGGGTTCTCTC
CAGGCATTGGAGACCACTGCGTCAAATCCCGGAAGAGAGGTCCAGAAGTTTTCAAATTTG
AAGGTCTTCGACCTACGCGTCCCGACTGCGTCCTCAAGCAGCAAGGGGCAATGGTCTGAG
AGCGAAGAGGAGAGCGCCTGGAGAATGTGAGTGTCAAAATGGATGTCCCAGTCGTCGTTG
CAGAAGGAGTCCAACTTGCACAACGTGGGGTTTTGTCTTTGTTGCTCCAAGTGAAACGAC
GGTTTTGAAGGTGGATCTCCTTCAACTCACAAGAGAGAAGAGCGGCCCGGAACCGGGTGA
TGTGACTGATACTAACATTCCTCTTATTTTTGTCCCGTGCCCTGTAAATTTGGTTGAAAT
CTCCAAGTGCGAGCCAGCGAACCCCAACTGATGGCTTTTGGGCGACTAGCTGAGTGAAAA
AGTGTCCTTCAGAGACGAAGTAGTGGGACCGATACACTGATCTGATCTTGTAGCTTGTGT
CCGAGCCGATGATGCAGACCATGGCCGTGAGACAATAGGTTGACGTTTGAATGGAGGTAA
TGTCTACCATCTGGTCATCCCACAACACGAGTATTCCCCCTCAGATACCAATTGCCGGTC
TTTGAGCATAGCTACGGAGGTGGTTCCCACCAAGAAGCAAGGCGGTGAACGTGTCAACAT
TGTCCATCTGAGTTTCTTGCAAGCAAACAATTTGACATGAGGAGGCCACAATTGTTTCGC
TAACGATGGTGTGACGATTCAGGCAGTTGAGACCTCTCACATTCCAACTCAGAACATCAA
TTGGGTTTTCCAACATGATTAAACCATACTTGCCCTAGTACAAGTCTAAAAGAAACACAC
ATATTGAAACAACTCTCACAAGCTACCATTTGGAAGTTGATACTGTAAGTGCATCTAGTG
CNNNNNNNNNNNNNNNNNNNNNNNNAGACTTATAGGTTAAGAGACCGATGTGTTTGTGAG
TGTACACATGCTCTCGTATAACTTCGTAT
