| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_1571479
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_15761 |
2 |
1039 bp |
MLOC_15761.1 |
Available |
Available |
LOC_Os04g24478.1, FRAME:-1, EVALUE:6e-35, 13104.m02291 protein jasmonate-induced protein, putative, expressed |
| MLOC_1579 |
2 |
1612 bp |
MLOC_1579.2 |
Available |
Available |
LOC_Os04g58200.1, FRAME:+2, EVALUE:2e-180, 13104.m06107 protein protochlorophyllide reductase A, chloroplast precursor, putative, expressed |
| MLOC_15897 |
5 |
2190 bp |
MLOC_15897.2 |
Available |
Available |
LOC_Os04g51610.3, FRAME:-3, EVALUE:7e-17, 13104.m11942 protein calcium-transporting ATPase, plasma membrane-type, putative, expressed |
CDS Structure of MLOC_15761
CDS Structure of MLOC_1579
CDS Structure of MLOC_15897
Contig Sequence (3666 bp)
>contig_1571479 3666 assembly3_WGSMorex_rbca.fasta
GATTGGGCATACAGATTGGGCCTTATGAGGCCTTAAGGTAAACATGGCATGGATATTGTG
TTCGTGGGCTATTAAATCAGTCTATATGGACAATTCGGTCCTACAGAGTAGAGGACCGAT
TTGAACGTATTTAAATTCGGTTGTAGACCGATTTTTATTCGGTCTTCTCAAGTTCGGTAT
TTATGGGTTCGGTCTCGGCCTTTATGGCTTCAGTTTTCGGTTTTCCATTTTTATGTCGGG
GTTGAGGTTCCACAACTAATTGTCATTATAACTTTCCTTGTGATGCTTTATTCTAGCATT
AATATCTTAATTTCAGTTTCAATTTAATTCCCCTGCTGAGAAAAGACTCTCAGAAGAGTG
CCTTATATCTGATACTTATTAAGGAAACAAATAGCCGGTACAAAACAAGTACAACTTGAT
ACGTAACAACTTGATAGAAGAAAGTACACAATATACTTTTTTTGTCATCTCCTTCCATCT
ATTATTCGCGGACAACCGAAAACCCAAGGACAGCAAGGAAATGGACTTGCAACGGCTTTG
AAGACCACTATAACCACTCCCTGCAGCATGCAGCTAGCAATGAGATCTAGTAGGGAAGCT
GGAAAACTGCACGTGCGTTCATGGTAGTGCCTTCACCGATGTTAGCCCTCGAAACATATC
CGTAGTTGCTATCAGTTGAGTGGAGATTTGAATTTGCCAGCCTCACATTGTAGATATAAT
CCCAGTGCTTAGGGAAGTGTCCTTGCTCACGGATTTCCGTGTACACCTGCATACATAAAA
TATAAGAATGTGTGCTAGTAGATTTTGAGATATTCCCTTGTCCCTAAATACACGAAGTAG
TTCAGATTAGTTTGCTTATCTGTACGAGTTTTAGTTCAATTGATTTCAGAGGAAAATACG
AACATATCCATTGTTCCTAAATATAGATTCACAATGTAAATGGGCATGCTTGTCAATCCA
TATTTTAAATCATTAATATTTTCTTAAAATTATTTAGGAATCCGATTTTTGGTGTACTTC
TCAAGACAAACCAGACAAGATTTTATATCATTTTTGTTAAATTAACTAGACGACGCCCCG
CGTGTTGCTGCGGGAAACATGATAAACAGATGTATAAATAGGTGTTGAAAAACAAAAACT
ATTGCTAAAATATGTTAGGATTGCTCTCGTTTTATATTTTAAGAACAATAACTCATATGA
AACATTTGACAAAAGATGCGTAAAAAAGTGTAACATGATCTACATATATTTGCTCTAAAG
TATATACCGCGTATGCCCATAACAAAAATTAGTGGAACAATGTGTAGATTAGTGCACACA
TTAGAACTTATGACCACATGCATGATATTACGATGTGGCATGGTTACATGAGAAAAAATA
AATACTTATGACTAAACGCATGACTTGATGATGTAGCATGGTTGCATGAGAAGGAAAAAT
AGGTAGTGGATTGCAACTATTTAGGAATTGAAGATTATCATCTGCAGCTCCGTAAATGCA
TGATTTGCCAACTAATTAAACTCCAGCTTCAACTTTTGATTGCATATAAATTTATGTGTT
CTTAATAGATTAGTCATTCTAGCTCATAGTAACAAATAATCGGAGTATGAACCAAGAGAA
ATAAGTAAGATAGAATATATGAAGGTAAGCACATTATTTACCCCGTTGTTGCCAATGAAT
GGGACAGACCAAGTGAATAACCAGTCGCAGGAGCTGCTGCTGGACGGGATCCTGCTACGA
TACACAACAGCGGCAGTTGAACCTTTCGCAGCTGCTCTTGGTTTGACGTGGAGAAATGCC
CCCCATTGTCCATTCTGAATATCCGATGGGTAGGGTGTATCAAAGATACTGCCAATCCAA
TTCTTGTACGTGACGAAACTCAGATTGGTACCGGTAGCATTGTAGATGAGGCATTTTACA
GATATTCCATTACCGTACCTAGGAGTGTAGCCAAAGATATGAGTTGAGTTGTACAAAAAC
AAAACTATACTAGACCTTTGTTGCGGATCTTTTGCATGATTCCATAGTTATATATCAACG
AAAACCTCAATAGTAATTAGAATTAAGAAAACATTAGTATTTATCCTGTCTTCTATACAG
TTCGCAGTAACTGAAGTCAACTCCGTTTTCGCTAGTCTAAACTTTTGTATAGCTACAAGT
GTCGAAGCAGAAATAATAAATATCCAGATAATAAACCTACTTGATCTTCAGGTTGTCGAC
GAATTGTTGTGCATCAATATCCTTGCCACCCGCGTTGATCATCTTCATGGTATAGTCGGC
AACATCTTTTTGGGTAACGGGTTCTTTATACTCTCCAGTGGCTATCACCGTCTGCATTGA
AATGGGGATACCAAACACTCCTGAGGCCATTTGTTCCTTGGTTTCTTTTCTGTGTGAATG
GATTTATGGGTTGTTGCAACCATGTATTTATACACGCTGTGGAGGGATTCTCACATGCAA
ACCTGGTCACAGGGAGGGTCACGGGATAACAGGTGTGTCGGGAGATAGATAGAGAGAGAG
ATTGGGTAGCCGACGAACCTAGCATAGCACCATACGGACAGCAAGACAAAAAAAAATGAG
AGGATGAAATCAAAATCAAGAAAGCCAATATGCATGTGCGTTCCCAAAAATCAAGAGAGC
ATGGGCCACGGGGGAGAAAATCGAACGGGTGAACGTGATAGTGACGATGATCCTCCTCCA
CATCTGCCTAAAATCTTGATATCTTTATTTTTTTCTAATTGTTTTTTGCATGGGATGCTC
AATGTTGTCTCTGTTCAACGTGCAAAACGTGTGTTGTTACAGTATCGACCGTGACATATT
CGCATAAAGAAAGGGCCAAAGATGCCCCCTAGATCGGATCTTAGCTTGCTCACCACCACA
GCTCACTCCCGTACGCTCCAGTTTGCACACATATCGCATCTTCCTTTCTTTAATGGAAGT
CCCAAACGACATCTAACGAGTGTGTGGAGGAGGTCAAGATAGGTGGAGGGAAGGGGAGGG
TAGGTGGATGATACATGGGTATGTGTACCATTATTGCAATAATAGATGGACACCGGACCC
GGCTTGTATGGTAGTATATGTTTGTTAGGCAGATGAAAACGATTCCGTGAACTTGTGTTA
TAAATTAGCTTCAAGTCATGCACATTTCAGACTTGTATTGTAAATAGATCGCCTTGATAT
AGCCTTTTCAGCAGGGTGTCTCTAAATCGTATTATGTATAAATAAGTCGGTATATCTCGC
TATAGCTCCTCTATAGCTAATTTAGAGGTCCACCATTATTTATCATAGCCCTCTATTTAA
AACTTTAGTTTGTGTGGGAAGTAACCATCTTCAAAAAGCGGATGGTTGAGGCTCCTTTCA
AATGTATGAAATGTTTTGAGTGAATTCAGTCATTTCCGGGCAGTAGGGCACTATGGTTCA
ACCAGCTTAGAGTTATTATGTTTGTGTTCTTGGTCAAGTGGATGGTTAAACTTGTGCTTG
TGAGCTTTTGCACTCATGTCTAGTTATTATGTTATATTGACACCCTCTTTGATACACTCC
CACTAAACGTATAAAGTATGAACGGCAATATGGGCCTTTGATAAATTATACGCATACTTA
TATTACCCCCCCCCCCCCCCCCCNNNNNCCCCCCCCCCCTTCCCTCTTTTCCTCTCTCTC
CCCCTC
