morexGenes - Barley RNA-seq Database

Contig contig_1571468
Source Contig contig_1571468
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1571468 (7461 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1571468

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_15757	1	733 bp	MLOC_15757.1	Available	Available	None
MLOC_15756	4	825 bp	MLOC_15756.3	Available	Available	LOC_Os07g07540.1, FRAME:+3, EVALUE:1e-76, 13107.m00738 protein SHOOT1 protein, putative, expressed
CDS Structure of MLOC_15757

CDS Structure of MLOC_15756

Contig Sequence (7461 bp)

>contig_1571468 7461 assembly3_WGSMorex_rbca.fasta
TTCTACTGCTAGCTGTTGTAGCATTTCCTGCTTGCCGACATCCATCCGGATATCAAGTTT
GACTCAACATATTTTTCTTCTGCTCCTAGAGATCTGTAGATTACTCATGTTTGTGGTGCG
CTTGTCGATCTCAAATGTTGGGTGCAGATGCAAAATTACCAGAAGAAGATGGAGCAGAAG
ATCCAAAGAGAAGATGACCTTCGCATGGGGCTAAAGCTGTACAAGTCGGTGATACATACT
TTATGATGCAATCAGATTTCTTCAATTTGAAAACTCTGTTGACTTGTTCTGGAAAAAAAA
CTTTCAGGGATGGAAAATACGAGGAGGCATTAGAGAAGTTCGAGTCGGTGCTGGGGTCAA
AACCAGAGATTGATGAAGCTTCCGTAGCCAGCTACAATGTCGCGTGCTGTTATTCGAAGC
TCGACCGGGTTCGCCTCCTACTTGTTTCAATATGAACAGCAAAACTGCAGGTCTGCCGCT
CAATACACACATATGGATGTTCTTTTGTGCAGATACAAGCTGGCCTTTCTGCACTTGAAG
AAGCCATGAAAGCAGGCTATGAAGACTTCAAGGTAACTAGGCACTATCTGCTTTACAAGA
GTAAAAGGGTCTAAGATTCATAGTTAGTGATCTTTTATCTTGATTTCCTGAAGAGGATTC
GCACCGACCCGGATTTAGCAAACTTGAGGAACTCGGAGGAGTTCGCCACCCTGCTAAACA
AGTACGATGAATCGTTTATCAATGAGAACGCCATCAATGCTATCAAATCCATATTTGGAT
TCGGTAAGAAGTGATGACCTACTATCGATTGCACACATCTAACTTGGTCTTGCAGTTTGC
ACACTTGACCATACAGTGCAGCCCCCTCTCTCCCTCCCTCCCTCCCTCTGCCACTAGTTC
GAAACACTAGTTCTAGTTTGTTCTTGCTGAGACTTCGGAGATATCTCCAGGAATGTTTTT
AGCCTTCCTTTGTACTTCAACCATTCTATGAACATACACTTTGTACATCCAAATGGCAAT
CCTCCATTGGGAAGCAAATGCCATGTACAGGAAATATGTTACCATCGTGCTTGTAAGTTG
TAATATACTGAGCTATCCTAAATAAGCGAGTACCAATCGGAATGTGGATATATTTTCTGG
TGAACACAAGAGCCAGCTTTTGACAGACAAAACAACGCTTTACCTTTTCAGTTTTGGAAA
GCTTACCTCTTATAAACTATACTCCCTCCGTCTCAAAATAAGTATCTTAACTTTGTATTA
GCTTAGTATAAAGTTGTACTAAGCTTGAGACAGTTATTTTGGGACGAAGGGGGTATTTTT
TTAAGCCTCCCACCGTAGAACAATTGTTCTAAGGTAATTTTCATCATATATAAAAAGTAT
GATAAAGGGGGAAACGAAAGTAAAGATAAGAAAACAAAAGGTCCTAGAAAGAACAACAAA
GAAAATTAACCAATTCCTGTTTTTGGGATCAAATCTATAGATAAGATAAAAGTTCCGGTC
AATCCACTGTTGGAATTCTTCTGTAAATTTGTCCTTCAGTTTGATCTTGAGATGCTTTAA
ATCCTCTTTCATAATGAGTCTCCAGTTTTGTACTGTTGCTGAATATTTCTAAATCCCCTG
CCAATCCTGTTCTATAAGAACCTAGGACATTTAAACCACCAGAAGAACATCAGAAATGAG
TACCAATAAGTGTATAAAATATAAAAGATGAAACAATGAAGGGAGAACTGCTCCTCTTGT
CAACGGTGCGGCGCCTTTCGGGCCAGGCAAGGAGGCATGGGCCTTCTTTGACATTTAAGC
TGGGTGGATGTGTCGTGTCAGGGCTTCCGGTGTTTAGATGACGGCATGCTCTTCCTCATT
ATTAGACGTGTTGATCTAGAGCCAGCATTCTCCTTCCTTGATGTTTTGCTCGTGCTGAGG
ACCTCTCCATCTCTGAGCTATGCTTCTTCCTGTCGCTCCTTTTTTTTAGCTTGGTGCGTC
TAAGGCTTGTGAGCTGCTTACCAGCGCCTCTGTATCTTGTCGTTTATTTTTTCTTTATGT
TGGTTTCGAATCTACTCATTTATTCCTTTGATTGTTGTCAGCAGAGGTAGCTTGTAATTG
TAATTGTAACTGATGGTAAGATAGCAGCTAACAAAATGTGGAATTGAAATGAGAAGATTC
AGACCTCCTTCCATCTTCCTATACTATAACTTTATGTTCTTACAATGGTTTCCATGCTCC
CAGCTGCTGCTTCCAAGTGCAATTGAAGCAAATCGTCGTCTTCTGAATCCTTATAGACAA
CCTCCGTGGTAAAGTAAGAATCAAGAAAGGATTTCTGCAAGCCTGACCGTAAACATGAAC
ATAATAACAATATAAAACTCTCAATGGAAAAAGTCATACCTTGCTGGGTAGTTTTGATTG
CAACTTAATTCATTTGTTCCTTTGGTGTTATCGGAATCCGGATCAACCACGTAAACAAAA
TCAGGAAGTAATATACTCGCGCATGACTCAGAACCAAACCACAAGACACCGGGATCGAAA
TCATCAACAGCGTAAACAAAATCAGGAGGTAATATACCCGCGCATGACTCAGGACCAAAC
CACAAGACACCGGCAAGCTCCAAGCTGCTTGCCGGCAGGCGGATGCCCGACAAGCCTCAA
ACCAACATGCTGCCCACTACTTGCCCACCGCTCCACCTCATCGGCACAACGATCACTTGT
CGACCAGGTGTCAAGCGCGCAGGTAGTTTGATGAGACCTATCGGGGCACGTGTCGCTAGA
GAAACAACTTTATTGTCACCTGCCCCGATGGCATGACTAAGGAATAAAAGGTAGATGGGC
CAACGGCATAGAAGAGGCATTCCTTGCCGACAGAGGTCCCCAGCTTGACACCTCATGACG
TATATAATGTGTTGCCCTAACCCGTCAGCGTTAGGTATTTAGCACTGTAGCATACGTCAG
CAGTTTGATCACTGTTGTCGCCACTGTTTACCCTGTGTGGTTATCATTTAGCCATTGCGG
TAACCCTTTAACCAATAAGAAGATATCCATGACTACCTTTACAAGGTCGCCTGCCCATTT
GCACTAGTAGACGCGCTTTCCAATCACCTTACCCGCAAGTAGCACTCCTATAATATGGAC
ATCCACACAAATAATCCACAAAGCACACGACATAGGTTATTGCACCTCGTGATGGCTCGA
ACCTGTCTAAACCCTTGCATGCTGATCGCTGGTTCCGCTCTTTGTGCATGACGATTCCCA
CAGTTGAACAGCAAAGGGGCCCTTGGTCAGTCCCATAGATTGCCGTACCCCTACATCTTT
AGCGCGCCAATCAGGGGAATCGTGTGCACGAACCTGAACCAGCTTTTTGCGCATCTACTT
CACCATCGACACCATCACCCATGGCACCTAAGAAAGCCAAGGGTACAACGTTGACCGCCT
AGTCCACGTCCACGTTGCTCACGCCAACGGCTACGGGAGACGGAGGCAGGGTCAAACACC
TCTCCCAGCGCACTGGCGAGCGCAACCACCACACCAACGCCGTCCGGAGCACCACGAGCC
GCGACCCTGACCCTGTTGTTGTGATGTCCAAGGACGCCCCGGCGAAATCCAAGGGCAACG
CAACGGCGGTGGTGACGGCAAAGCACACACAGCCTCCATCGCAGGCAGTGGCGGAGCCAG
CGTCCGGCCACCCCGGGCACTTGCCCAGGCTCGATGGCTGTGAGACCGCTTACATACATG
ATAAACAGTAGGTAAATTCTACGGTGCGTTTTGGTTTACCCGGACAACATCCATGCACGT
ATGATTCTCAAACAAAAGGCTTGATATTTGCCCAGGCTTCACAAAATTCCGCCACTGATC
GCAGGACTGCTGCAACAAGCATCCTCGGGGAGGCAACGGCCCCAGATGGCGTGCTGACAA
ACCCTGCGCGTCATTCCGAGGATGCACAGGGCCAAGCTCATCGCCATCCCACTAGTGAAA
ATAGGACTCCGTGAGAAGTAAGAGTGCCACCCACGCTTCGCGCCACGCCATGCCGAAGAC
ATTAGCTGAGGCCTTGGCACAAGCCCAACCATTGTTGGATTTCCCTCTCGCGTCGGAAAA
TATAGAAGACTGGAGAACAACCATTCAGATCCTCCTCATCTTCGCGAACAAGGACAAGCA
AGGGCAAGCGGGGCCCTCGCAAGTGCACCACATGACGCCAAAAAACCTACCCGCAGGCGC
AACATTGGCGGAGCACCCACGGTGCAATCACCTCCACAACAGCAGTGATAAAGCCACCAG
GCCAACACGCGGGACGAGATCTCCATGATGTCGTCGGGCTTGCGGCAATGACCAGACCAT
CAACGAGTCCTACAGGACCGACGAAGGGAGGATGCTCGCTCCATGATCGAGCGGCGTCGG
GAGGTGCACCGTCAATCCAACGACCGTGTCAGGACATACGTTAATGAGCCTGCGACAGAG
ATACGGGGAAGCTTACCTTACGAGATGGGTTCACCCGCTTTCACCAGTGAGCTGTGACAA
GTCTGCTGGCCTTCCTCCAAAACTTTCAAGCCTGATCAGTCTGTCAGAGTTCCTTGGTAT
CTACACCATTGAGATGTTGTCGGGCCCGTGGGACTGGGGTACCCAGGCCTGTTTGCCTCG
GGCCCAAGACGCGACGCATGCCTTGGTCTGACTCGGCCCACCATCGGACTTCGTGGGCAA
GATCCTCGCGAGGGATCCCTCCTCACGAGGCGAGTGTCAGCATGCGTCTTCAGGAGCCAC
GCAAAGCCCCCTTCGCGAGGTCGCTCCTCGAGGCCACGATCGAGGTCCTCGCGGGGCAGA
CTGGACGAGGGGTGCCTAGCTGGGTCGCGCTACTCTGCATCTCCGCATGGGTGACGCGTG
CCGCACCGAGCGTCGCCAAGAGCCTTGCCACTAGGTATGAGTGAGATATCTTTCCTCTTT
TTGCTAGGAGAGCAGGGCCAGCTCGCCGGTTCCCAAAGAAAACTCCAACGGTGTCCCCTT
TGGTGCAAGAAGGCCAAGACAGGAGGCATGCCAGGATGAAGGTCACCCTCGAGCCCACCA
ACGCATCATGGGAGGAAGCTTTTGCACGCTAAGACCACTTTTGTCAAGATAAGCTGCAAT
CATGTCCCCCACTGGTGTAGCGTCGTGCTATACAAATGGTTTTTAACCCCTTCCCGTGAC
GACATTTTTAACCGTCGCCTAGTGAGTGTGAGCGATAGGGGGGATCCTTCCCACACGACC
CAAAAACCGTCGGGGATAGGGTGTGGGAGTGCATTCGTTTTGCATAACTAAGCGTATGTG
ATGCCGACGTCTATCCCAAACGTGAGTCTTCACACATCTATTTATGATATCTCCAATATC
CCAAATGCTCTATCCTTTCTACTCGTTTGTGACCGCATTACCATCATAGTCGGATTTCTT
TGGTTTTACCTTACCAGGCGCACTTCAGGCACAGTCCACACGCGAGATTTTTCGAGGCAC
GTATCAAACTGGCTCTACTTTACAATGCATGCCACATCACAAAGAGTTCATGATTGTAAA
GCGCGTATTATAAGGCGACAATCACACACATTTAGTTTTCTCGCACCGTTTGTGACATTG
TCTGACATCACACACGCTTTGCAAACAGCAGTTGTGTGCATGGTTACACAATTTCCTCTT
CATGAACCGTTTCGGATTATGATGTACATCACACACGTCGTGCTTTATAGACCATGTGCG
TCGTAATGATCTGCACAACATATTTTCTCCCTAATTTAATTTATGCTAATTAAAATTGTA
CCAAATTTCAATTTGAAAGTAGGCTATAACTTCATTCATATCCATCACGTTCAACAACCA
ATGCATTATTCGATTCAAAGGTACATATGTTCAAGAATTACATCAAAAAAATCACATAAG
CACCAAATATAGAATGATGAACTAGGGTTGTATACTTGTACTATTAAAGATGGTAAATAA
AGAGACGAGAGAAATTCTGGTTGATGAACAAGGTGAAGCGAAATGCCCCTATTGTGCTCT
CTTGCATGCTGAAGGCGCACACGATTCTAGTCCAACCCCTTATGATGGACGGTCGTCAAT
CATGTAGTTTGAGAGGTAATCTTGAGTAAACTTCTTCGGGAACCAGTGCAAAGGAAAAAG
ATTCACACATTTTCATCTAACAGAACTCATTATGGGCAGTAAAAAGAAGGCTACAGAGTT
CTTACTTACCATGCTGCAGTTCATTGTTGTCTTGCGTAAAGTGTAAATAAATAGTTTGAT
TGACATCTTTTGACCCACTTTATTAAAAATCTTTATTAGTTTCCTCACTTGATGCTGGTT
CACGAATATCTCATTGCCCCATACATAGAAAGGGTCGAAGCGTGGATCTTTGCCAATGAC
ATATGTACCTAAAAGCACCAAGTTAATATTAGAAGCTAAACACAATTGCACAATAATGTA
GTACAACACTCCCCCGTCTCTAGCCGATCCACTAAAAGTTAACGGAGTAAAACCCTTATT
GGACTATATATATACTCTAGCAATTTTTGACCATTTCTAGCCGATCCTCTAAACTTAACG
TTGTAAACTTCAAATTGATCAAGTTCAAAGCAGGTTCAACCGAAAGTAGCATGTATTCAA
ACATAAACATAGATAGTTTTGCATAACCGAACATAAAACATAAATTTAAACTAAACTAAA
CTACGTTCGGTCGAAGTGGAGGTCGAGCCAATCCTTCCTGGTCAGGTACGGTGTGCCGTG
AGCCGGGACCGGGCCGGTGCTGTCGTCAGGGTCGTTGGGGAATACACTCCTACACTGGTC
GACGTCGATCTCTTCGTCCTCGCCACCCACCTTGACGCCCTCTGTGCCGCCGTCCTCGCT
ATTGTCGACCTCGTCATTGGAGCAGAGCACGATAACCTCGCCGCCCGCCGCGTTGGCAAA
GATCATCCGCTCCACATGCACGACCTCTGGGTGTTGCCGGTGGAGCTCTTGTATGTAGGC
CTCATTGGCGAACTCGGCCTCGAGGCTCTCCCTCGCCTCGTTGCCCTCCCGCGCCATAGC
CAAGCTCACCACCCCTGGCTCTAGCAGGACGAGATCAACTAGACGTGTGTTGAAGGGGAA
ACTGAGCCTAGCCGTCGCGCCGTGGTGGCAGACCTTCCAGTGGTCGTACTCCCGCGAGCT
CGGCCATGTGGAAGCTACCGAGACACCGGTGGGTGTGGTCCTCCTGATCCGTAATCTCGG
CGATCCACTTGCCCCACCGCCGTTGCCAGACCCCAAGGTAGGGCCTCGTCAGCAGACGTG
ACTGAGCGAGGAAGGGGAAGTCCTCGAACCGGCATAGGGCGGATCAGGCAACCGACAATT
TACTACATTTCATTATTATTGTCATGTTGTACATTATTTGACTTATCTATCATGTTGTTT
TTCATGCTCCTTTGTATGTTATTGTACTAATTGTGAGCCTTGATGTTTTTATGTAGGTAT
GGCGGCGTCTCAACCCAACAA