morexGenes - Barley RNA-seq Database

Contig contig_1571451

Source Contig contig_1571451

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1571451 (2395 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1571451

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_15745	1	684 bp	MLOC_15745.1	Available	Available	None
MLOC_15744	1	626 bp	MLOC_15744.1	Available	Available	LOC_Os01g05900.1, FRAME:+1, EVALUE:2e-25, 13101.m00576 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative

CDS Structure of MLOC_15745

CDS Structure of MLOC_15744

Contig Sequence (2395 bp)

>contig_1571451 2395 assembly3_WGSMorex_rbca.fasta
GCCGGCGAGTCCGCCAAGCTCGCGCGCTACAACAAGAAGCCCACCATCACGTCCCGGGAG
ATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCAGCGAG
GGAACCAAGGCCGTCACCAAGTTCACCTCCGCTTAGATAGGCTGTTCATGCCGCTTCTTT
GAATCTGTTGATTTCTGTTGGCTGTTTGATGAATCCATTGTACGCCGTAGTTAGGTGTTG
GGATGTAAGTTGTGAACATACCGATTGTTTCAGTATCCTGAAGAAATAGAAATGGTGTCG
CTTTGGTATGTGTCTTCTTGTTTTGATCTGTATCCTCTTGTTTTGGTCTGGATGAAATAT
AAATGGTGTCGCTTTGGTCTGTACCCTCTTGTTTTGGTCTGTCAGACCTTCATCATCTGT
AAATGCCATGCTGCTGTGGTGACACATCTGTGCCATAGTTCATGTTCAGTAATTCGACAA
CCAACAGTTCAATTGTCTGAAGGAATTAGGAGGTGAAAAAGGCCGTCGTTTCAATCGAGC
CTTGGTTACATTCGCAGTACAGCCAGAGTCCATCTGCTTTTGAGGTAAGTGTTTCTATTA
TTGTCGCAAGGGCAGGTCATTTTTCCACGATCCCGAAAAAATGCTTGCGTTTTACAGTTC
GGATCGACGAGCACTGTCGCCAGTACAAGCCTCCTATCCGCGATTTCTCAGCGCACCTTC
TCCAGCTCCGGCGGCGAGCTGCATACTTGGCAGGCATCTGGTTTTGCTTCAACTGGCAAA
TCCAGTGCTGGAAGCAACATGTGATTTTGCTGCATCGACTCAACTGTTTTCTGCGGCGAC
GATGGCGGACTTCTTCGTTTGTTGCAAGAGACATGGCAAAAGCTTCTACCGGCGAGTTTT
TTTTGTTACCACGGCGCCGATGAAAGTAGCGACCAAGAGGTGGTTTAAAGGAAACGATGT
GTTAGTGGCAAAGTCTGAGCTAGAATCGCCTTTTGGTTTGAGACATTTTACGGTGCATCG
TACTGCCGAAAATTCTCCTAGGACATTTTGGATTTGCCAGTTCTTATTGATCCCTGTTTT
TTTTTTCTTGTCTGTTAGCTTTTCTTAATGTTAATTGTAATGATTAATAACGTAGGTGAT
CAGATCTGTGAAAAAATGAATTGTTCTTCATCTTTGTTCATACGTTTGTTCTTCATTCTC
AGGAAATTCGTCAACCCGCCAAGCAGTCCGGCGGCCGCCTCAGTCGCACAGGGTCGGTCA
CTCCGTCTTCCGGCCTCCGGTGACGGCGCAGCGGCTCTGGTCCGCCCATCAGCCCTCTCT
CCATCCCATGATCTTTGGACGGCACCCGAAAACGGTTCCTTCGCAAGTCGTGTTTCATTA
GTGATAGCAAATGTCCTCCGGCATTTCAAATGCTCCCTCCGTTCTAAATTTTTTGTCTTA
GGTTTGTCTAGAAATGGATTTATCTAAATACTAAAATGTGACTAGATACATTTATATCTA
GACAAATTTAAGACAAGAATTTTGGAACGGAGGGAGTAAGAACTAGTAAACTTGCACGTG
TAACACACGTCTAAATTGACATACATTATATCTAATATATGTGGTTTTCAAAAAGCTATC
TATGATATTCTAAAAAATAATTAATTAAAAATGTGATCTACGCGATAAGTAAGGATTATA
TGAGGCGATACACACACCCTTTTGCAAAATGTTCTTGTGATGGCAACTTAATTAATTGAA
ATATTGTTTAACCATTTACACAAAAATGAAGAGATGGTTTGAATAGTGGGAAATAAGGGA
TCTTCAGACATGAAACAAGGTTTCTGAGTTAACCAAAGAAAAAAAAATCACAAACTAAGA
TAACATCAATCATTAGCCGCCATAAACATCATCACTTATCCTATTTCTCCGCGTCGGCAG
ACTTGTTCATCCAGGCTCCCAACTGGTGTTAGTTCATCATCTCAACACACAGGTTGGCAT
ATGCATATGCTTCTCGCCACTGCGAGTGATGGGCATGTAATCGCCCTCGACCCCAGGATG
GCTGTAGTGGTGTAAATACGGAGATAAAGAAACAAACACATATGCCCTGTTTGGATCCTA
GGGTTAGAGTTAGATTGGGTTAAAGTTGAGCTATCTAACCCTCAAAAATCCAAACAGATA
GGGTTAAAGTTGGTTAGATGCATCTAACCCACCAAAAAACTCTAACCCACCCAAGAGGTG
TTTTTTTGGGTTAGAGTTAGGTGGGGACAAAAAACAATCACATCCTACCACACCAGATCC
CTCCCACCTACCCCGCTCCCGTCCCTCCCGTCGCTCCCGCTCCCGTCGCCCCTCCCTCCC
TCCTCACCGTCCCGTCTCAGCCGCCGGCCGCTGCGCCCTGCCGCGCCCCGCCCCG