| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_1571422
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_15730 |
3 |
956 bp |
MLOC_15730.2 |
Available |
Available |
LOC_Os01g71190.1, FRAME:-3, EVALUE:5e-78, 13101.m07752 protein photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed |
CDS Structure of MLOC_15730
Contig Sequence (3719 bp)
>contig_1571422 3719 assembly3_WGSMorex_rbca.fasta
TGGACTCTCGCAGCCGCTACCCTCAGTGGGTTGAAGTATCCACTAACATGGACGTAAGAT
AGCNNNNNCTATCGGAACCATGCCAAGAATCATCGTGTCAACCTTTGCGTTTGATCCCCT
ACCTTCCCCTCTACTTTACAATTGCATGTTTTACTTTCCGGTCCAATACTCTTAGATATG
CATGTGTAGGGTGTACTTGACTTGTCTTAATTGCTAAAACAGGCCCACACTTAAAAGTGG
GAAAATGCTAAGTTTTTATCTTGTCAAGTAGTCCAATCACCCCCCTCTAGATATACTATT
GATCCTACGAATAGTGTGGTAATGCCCTCCTCGATGTGGTGAGGTTAGCAGAAGCACATA
ACTAGATCAATCAGAACAAACTTAAACGTACATCAAAACTGCAATACATAATACGATACG
TTTAACATAGTACGATAAGTTAGAAACAAAACCACAAAACTTAACATAGTTTTAAACCAA
CAGCCAACACAGAAATATGAACCAGCGATCACTTACGTGGTCACCTCGAAGGTGTCGTCG
TGCTTCTTGCACTTGATGACCACCCCCACGCCATCGTCGTTGAAGTGGGTTTGTCTTGCC
TTCTCATGGTAGTGCCCGTAGTTCCTTCGCTTGGCGTTTGGGTGATCCTGCACTAACTCG
TCCACCAATGGCGACACAACCTCTTTGCCCTTCTTCAATGGTGGAACGACCTCTTCGCCC
TTATCAATCTACATTATAGACAATGCGCAGTTCAAAGGTCGGCATCCATTCCTATCGGCC
TAACGCTTCTATATTTACCCACACTTCTTACCCAACACCGCACTCAAACCCTCTCTTATT
TTCACCTACTCTCTGTTTCACCATCTACCACTCACGATAAACTCCAACCCCAACCCTTTC
CCCTAGCGCATGGGATGGAGGGTATTCTTCCTCAGGTGCTCGTTCGGTGACTACGCGAAG
CTCGAAAACACAATGGAAGTGCGCTCCAACTTCAGCAGTATGGAAGAAGGGCACAAGGAG
GCCGACGTTGTGGTGAAGAAGGCGGCGATGAAGGAATTGAAATAAGAAAAGAAGATGCTT
ACACCCCACCAACGCTCGATGTGACCCCAAGGTTGTCGCGGCTAGACAAATAGTTTGTAT
CCTAATCCCAAGCCCGATGTACTCGATAAATTAGCCATGAACTCAAGATTTCATCGGTGG
AGAATACAATCCCCTCACCCTCGATGTGTTCAATCCCCTCCCTAACTCTCTAATCGCGTG
CTCCAATTAAATCTAGCAGGACTTGGCGGAGGTAATCTAGAGAGGGCAAAGACTTACCGC
CATGGCCGATGCGCTCCACTGGAGGTCTGCAGTCACTACGGTGGTCGCCGCCGTCTTGGA
TCGTCCTGGTGTCGCTCCGGTGGTCGTCGTCGCCGATGTGAGTGGTGAAGAGGGGAGAGA
GGCGAGGAAGGGAGGTGAGTGTAAGTCGTGATGTCGCTTCAGAAAACAACGTGATATCTC
CACACTGCATCCACGCGTGCAACCGTCCATGCACACGTGCCTAGGCTTGCACCATTTGGG
TCTGGCTCCACAAAAACGGCCGATTTGAGCATTCCTCTAGATGCAATCCCAAAGGTGCTT
TAATATTCGTGTTGGGCAAGCCAAACAGTCAATGTGAGTAACCAAAGGGGCATAATTTTT
TCTGTCCGGGCCTGGCTAGAGTATATGCGGGTAACAAAACATGCCCTAGTCGCTTGAGTG
GCAGATTCGTTACCTCGGGACTGGTGCATGTTTTTCGCAAATGCTAGTTTTCTATCGATT
TTCCTTATTACCAGGTCGATTTTCTTACCAGTTAATGTGAGTTGCTCAGGAAAAAGAAAA
CGTGCTTCTTGCTGGTGTATACAAAATGGGCTGTGCTATGCATCGGTCGGCGGATTTGTC
TAAAAGATCCGACCACATGGCAACCGTCTGATATACAAATATCCAGCATCCAACGCCGTT
TTAATTTTTGCAACAAGGGTAGTGTTATGAAAATACTTTGTAACAAGGATAGTGTTGCGT
AAATACTTTGCTGCAGAAATATTTTACTACATAGTTGATGTTCCAGATTTTTTTCCCTCT
ATTTTACAACATGGGTGTTGTTACGGGAAATAAATTGCAACACAAACAACAATGTAGACA
ATATGTGCCATTATTCGGTCCTTATTTTTCTGCAAACATGTGTTATTGCGGAAGAGAATT
TTGCGACACTCATGATGTTACATAAAGAGAGACGGGCACGCATACATGTGTCATACTCCC
TCCGTTTCTAAATATAAGTCTTTTTAGAGATTCCACTAGCAAACTATATACGGATGTATA
TAGACATACTTTAGAATATAGATTCACTCATTTTGCTTCGTATATAGACTACTAGTGAAA
TTTTTTAAAAGACTTATATTTAGGAACGAGGGAATATTAAGCAGACTTATATTTAGGAAC
GAGGGAATATTAAGCAGGCGGCGGATCGCTCGCGTGCGCTCCGTCGGCTAAAGGCAAGAG
TTAAAATTTGACAGAATGTCAAAGTTACATAAGAGATACACATGACAACTCAGTACAATC
ATTCACCTTCGTTACCAGCTCGACAGTTGTACTGAACTAAAGTACTGAACCCACGGGCAA
CACAAAGTCACATCGAGGATAGGTGACTTAATTCTTGACGAACTGGAGGCCGTTTGCCTG
CGAGTACCTCTCCATGAACCTCATGAATCGGTCCCAGTCCCCGGCCGTGCGCATCACGTA
CTTGGCCTCCACCCTGGCCGGCTTCCCGTTGACGAACTTGGCGCTCACGTCCACCGTCTG
CAGCATGCCCTCCTCGTCGATCATGTAGAACCCCGTGATGTCCCCGAGCTCCGCCGACGA
GTCGAACACCGACGGCTGGTCGAACTCGAAGATGGCCACCCCGTTGGTGCCGTCGCGGGA
CTTGGTCAGCCGCACGTCCGGGATCGTCTGCTCGTCCGTGCCCTGGATGAACTGGATCGC
CGGTTTCATGGCCACCACCTGCGCCGCGGCCCGGGAGCTGCGTAGCGGCGGCGAGCGGTG
GACCGGTTTCCTGGGACGGCACCGCAGGGAGATGCCGCGGAATGAGGAGTGCAGGCTCTG
GCACGGGGCACCTGACGAGCCTGTAAACGCAGCGTGTCAGGTACTGGAATGTGAGATTCA
GAATGGCACGGCTTCAGTGAGAAGAGAACAAAACCTGCGACGCTTCGACGGGGCGATGGC
GGCGCCGAGACCGGCGAGGCGGCGGCGAGGGGTTTCATCACTGCGGGCATGATGCGATTC
GCTTGCTCCGGAAGTTGGGCAGCTGGGTGAGGAAGAAGGATTGGTGCCTAGAAAGAAGGA
GCGGACGGGGAAATAGAAATACAGGCGGAGGTGAGGTTTTGAGTGGTACACACGGAGAAG
AGTGTTCATGTGGCTGCGTGTCTCCAAGAGAGCTACCCATTCCTCTGGCGCATTTTGGTC
CGCTGCCTTGCCGGTGGACACTTCTAGGCCACCCATTTAGGTTTGAGAATTTCTCCGCCT
TAAAAGACCACGTATGCTAGCTAGAGTTAAGTAATGGAGCAATCGCCACACATTGTATTC
CATCCCTCAAGGGGTATATATACAGTTACAGAGAGGTGAGGGAATCGTGGGGGGAGAGCC
ACAACGGACGTGAGCCGGGCATGCAGCGCATGCGATCGTGGAGGAGAAGGACTCGGGCA
