morexGenes - Barley RNA-seq Database

Contig contig_1571354

Source Contig contig_1571354

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1571354 (4337 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_1571354

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_15696	1	316 bp	MLOC_15696.1	Available	Available	None
MLOC_15697	3	2590 bp	MLOC_15697.2	Available	Available	LOC_Os12g42230.1, FRAME:-3, EVALUE:0.0, 13112.m04434 protein transketolase, putative, expressed

CDS Structure of MLOC_15696

CDS Structure of MLOC_15697

Contig Sequence (4337 bp)

>contig_1571354 4337 assembly3_WGSMorex_rbca.fasta
GGCTAGAAAAGATGTGGAGAGAGCTTTTGGAATTTTGCAAGTTCAATTTGCTATTGTGAG
AGGACCGGTTAGATTTTGGAATCAAAAGATGCTTTGATACATCATGCACGCTTGTGTGAT
CATGCATAACATGAGAGAATGAGCGTGACCAACATTTAGACTACTCTCAGTATGAGCTCT
TGGAACATCACGTGTGAGTGCGTCGTCAGGCTGCGAGGATAGCCCAATTTGTTGCCTCCT
ATCATGTCATTCGACGTGCCGAAACGCATGATGATCTTCAGAAGGATCTAATCAAGGAGT
AATGGACATGGAATGGCCAACAAAATGAGAATGATGATTTGTATGTTTCATGTTGTACAT
TTGATGTTACAGTGTCGAACTATTTATTGTTGACTATTGTGAAAAATCAAACTATTTATT
ATGAATTATTTTTTATTTGTTTGATCTTTTAAAACTCGTTTGTAGTCTCGTATGTTGTTT
GTGCTGGACCCGCGTTATGTATTTTTACTCGTTTGTAGTCTCGTATGTTAGACGCGTGCT
ATGTATTTTTACTAATTTATAGTCTCATATGTGTTGTTTGTACTGGACACGTGTTATGTA
TTTTTACAGCGTCTGCTGAAGCGGCGCACACATAATATTTTAGATCAGCCGTTGGAACCA
GCACACTCCGACGCGCTATGTTTTGTTATTTCAACGCCGCAAATTGTTGCGCGCGTAATA
TTTTAGGTCAGCCGTTCGAACCAGCACAGTCCGACACGCTATGTTTTGTTATTTCGACGC
AAACTGTTTTTAGCGCGCGCGGGGCTGTTGAAGATACTCTCATCCATCAAAGATCCAACG
GAGCCGGCCACCATCGCTTCACAAGAACAAGGACTCATCATACACAGTACATGGTATAAA
TAAATGGCATATGGCACCAACACTGCTACCTTCTATGTGATGTCCACAGTGAAATCAGTA
AAACAAAGATTACTAGGGTAGTGGTAAATAATAACAGGAGCGCACACTCACCCCCCAAGC
AGAAAGAGATCAAAACCCAGGAGCATCACAGCTTACATAGAAGTTGGGCAGATGGGCCAA
CAAACAACAGCTAATGATACACTTCAGTCTTCCCAGTATAACACAACGTCAACGGGACGA
CGAAAACCACTAATTACACGACAAAACAAACCGGACACGCACGCTGCTTCTGAATCCCAA
AAACACGTACGTACCACATGACAGCGTTACGACTGACAGATCTCCTCGACCGCGGCCACG
ATCTGCGCGGGCTGCACGACGGTCGCGTCCTCCAGGGTCGCGGCGTAGGGGGTCGGCACG
TCCTGCGAAGACAGGCACACGGGGCGAGTGTCCAGCTCATCCCAGAAGTTGTCGATGATG
GCCGACCTCAGGCTGGCGCCGATGCCGCCCGTCCGCATGCACTCCTCCACGATCAGCACG
CGGTGGGTCTTCTTGATGGAGTTCCCGATGGTGTGCAGGTCGAACGGCTTCAGCGACCTG
ATGTCGATCACCTCCGGGTCGTACCCCTTGTTCACCAACGTCTTGACGGCCTGCATCACG
TGGTACCTCATGCGGGAGTAGGTCAGGATGGTCAGCTGCGAGCCCGGGCGCACCATCTCG
GCCTCCTCCAGGCAGCAGATGTATTCCTCGTCGGGGATCTTCTCCTTCAGGTTGTATAGA
AGGACATGCTCGAACAGCACCACGGGGTTGTCGCTCCTTATGGCAGCCTTCAGAAGACCC
TTGGCGTTGTAAGGGGTAGAGCAAGCGACCATCTGGATGCCCGGGATCGACTGGAAGTAG
GACTCAAGACGCTGCGAGTGCTCCGCGCCAAGCTGACGACCGACGCCGCCAGGGCCTCGG
ATCACAATTGGGATTTTGAACTGGCCGCCCGATGTATAAGGAAGCATACCGCAGTTGTTT
GAGATTTGGTTGTAGGCAAGGAGGAGGAAACCCATGTTCATGCCCTCGACAACTGGTCTG
AGCCCCTTCATCGCTGCTCCAATTCCCATACCGGTGAAAGAATTCTCAGCTATTGGGGTA
TCAAGGACTCGGAGGTCTCCAAACATCTCAGACAAGCCTTTGGATACCTTGTATGAACCT
CCATAGTCACCGACATCTTCACCAATTATGCACACTGTCGGATCCAAAGTCATCTCTTCT
ATCATGGCTTCACGAAGGGCCTCAAACATTAAGACCTCATGACTGAACGGAACAAAAAGG
ATAGTTCAGTTAGGCATTTTCCCACAGGCAGAATCATATAGTTATATGGTATATCAAATT
CAAACTCATCCTTCATTGATAAAATGCAACATGTATATGTCATATCTGCATTTAAGAGAC
AGAACTGCAGAATTCATTCATTTAATTATTCAAGCAGTATAACACTTAGCATCTTGTAAT
GGAACTTACACTAACTACAGTAGATTCACCGCTGGTAATGTAGGAAGACTGGTCAGTTTA
CCCCAGGAAGGTGAGAGAGTTTTTAGTCAATTCGAAAGTAGGTAATTTGATGGATTTAGA
GTTTATATTACTTGCATCTGCAACATATATCATCCATTTTTTTTCCAACAATTAATGGGC
ATGTGTATTGATGCAAATTGATAATAATGTGCCTCCTTTTTGCTAGTTACAATCTAGAAC
GCACGGCTTCAGAGAAGTATCACAAAATTAGTGGCATAAGTTATGTTTGCAACAAACTTC
TACTTCCATCCTGAACTTTAAACCCAAGTAAGTTTAACCTAGTTCTCTACTCGCAAATGG
ATGGCTGCAAATTCTTAAACATATATTTTTATATTTGCGTATTCACACCTATTACTTACT
AACATTAAGTTTTGCCCCTAATTTTCGGACATTCAATTTGGCTAGTTTTGATTCTTCACA
TAAGGCTAGTACGAAGAATAGGTAACCTCATGTTAGAAAACCAAGTAAGGTCTAAGTATT
CAGAATTCACAAACAGTGTTTAGAGTTTTCAAAACATCAAACATGACAGAACTTCAAACA
GTATTATGAGTAAAAACCAAGTGGAACTGAAACATGAATTCCCTAGATGTCAGATAAGCT
GAGTCATGAAACATGACGTAAATTCAACTAAACGTACGGGAAAGAACAGAAGTTTCCAAG
GAACAGGACACCCTACATACCAGTCATCACATCTAAATAAAGCCGCAAATATTCTGTCTA
ATTAAACAGGGCGCAGGCACCCATTACAGCTACACAAACCAAGCAATCCATCTATTCATA
TGAAGCAAGCAACATCTGGTGAAGGGAACATGTAAATTAAGCTGAACTGCTTGTCCAATT
AGAACTTGTTCATTCGTTTTTTGTTTCCCAAAAGCAATCGCACACTTGCTAATGTAAAGG
AAACACGAGCAGATGATGGCACAAAACTCACCCGCCCGAATCGGAGGAGCTCGGCGCCTC
AGCCTTGGCCTGCAAACGCACAAAAGGCAGAGCAACCAATCAGTACGCGCGACGCAGCAC
CAGCAGGCAATGCGGGTTTAAAATCACAGAGGAACGTAACTGCAACGGCGGCCCGGGCCA
CCAGCCCGCCCCGCGCCCGCGACGAGCCCGGCGGCCTCCTCCCCGCGGCGGCCACCCGCA
CGCTCCTCGACACTACACGGGCTCAATTCGTCAGAAGCTTCATACAACCGGCGAAGTGGA
GGGGAGGGGGCTCGGCGCGCGCGTACCTGGTGGGACCGCGGCGGATCTGTGCCTGGAGAG
GGCGGCGGCGGCCGCCGTGGCTTGCGGCGAGGCGGCGACGGCCATCGGTCTCGTGGTGGT
GCGGACGCGGCGAACGTACCCTGCTCGGGGGGAGAGGCGGAGGGCACGAGGCGGCGACGC
TGGTCGCGGCGGCGTAGGCGGGGTTTATCGGCCCGGGAACACCGGAGGGACCACCTGTCC
GGCCCGGTTCAGGGCACGCGGTCTATGGACTTGGCGTACGTAACGGTGGGAGATTCGCGG
TGCATCCATGGCCTCTTGTTTTGGATGGATTTGGATCCAGTCACGCGGGCTGGCCCAATG
TTGTTTCTTCGCTTTCTCTGACAGTAGCACCAGGGCTATTTCTTGCCCGTTGCGAGACCA
CTTTCTTTGGTTTTATCAGTTTTTCTTTTTTTTTTCTTCAACACGTGTTGCTTTTTTCGT
AAACCTTTAAATTTTTCCAACACATCAACAATAATTTATACATACATATATCTATACCTA
ATAATAAAACGGCTATTGCTTCCGTCGGAAAACCCATCACGATTTTTTTTTTTAAAGCCC
ATGTAAATTTTGTTATTCAACCCGCGCTNNNNNNNNNNNNNNNNNNNNAAAAGGAAAAAA
CGATTCGCTGCAAAAAT