Map Locations of contig_1571275 (8185 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1571275

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_15674 5 1232 bp MLOC_15674.1 Available Available LOC_Os07g47460.1, FRAME:-3, EVALUE:5e-22, 13107.m05051 protein expressed protein
MLOC_15673 1 891 bp MLOC_15673.1 Available Available None
MLOC_15672 4 3408 bp AK356578 Available Available None





CDS Structure of MLOC_15674






CDS Structure of MLOC_15673






CDS Structure of MLOC_15672






Contig Sequence (8185 bp)

>contig_1571275 8185 assembly3_WGSMorex_rbca.fasta
GAGGCGCTCGACCTCACCGTCTCGCGCCTCGGCAGCCTCGACCCGCGCTCGCTCACCTCG
TCGCTGCTCTCGCTCCGCCGGACCGGCCATCTGCTCCCCGCCGCCGAGCTCCTCAGGAAG
GCGCTCGCTTCCTGCCCGGGCTGCATCACGCCTCTCTCGGCCTCGGTCGTCGTCGACGGC
TTCTGCAAGGCCGGCCGCATGGACGACGCCCGCCGCCTGCTCGACGAAATGCCAAGGCAC
GGCGTGAAGCTCAACGCGTGCTGCTATAACCCGCTGCTGGACACCTACACGCGCCAGAAG
AACGATGCACGGGTCGCGGAGGTGCTGAAGGAGATGGAGAGTGGAGGCGTGGAGCCGACG
GTCGGGACGTACACGATCCTTGTCGATGGTTTGTCGACGGCCGGGGATATCAGCAAGGTG
GAGTCCGTGTTTGATGAGATCAAGAGGAAGAATGTCGCGGGCGATGTCTACTTCTACAGT
GCGGTTATCAATGCGTATTGCCGGGCTGGGAATGTGCGGAGGGCGTCTGAGGTGTTCGAT
GAATGCGTTGGCAATGGCATCGAGCCGAATGAGCGTACATATGGAGCGTTGATCAATGGG
TTCTGTAAGATTGGGCAGATAGAGGCTGCTGAGATGTTGCTGACAGATATGCAGTTGAGA
GGAGTAGGGCATAACCAAATCATTTTCAATACGATGATTGACGGGTATTGTCGCCATGGC
ATGGTGGACAAGGCCCTGGAAATTAAGGCGGTCATGGAGAGGATGGGCATCCAGTTGGAT
GTCTATACATACAACACGCTTGCGTGTGGGCTCTGCAGGGTGAATAGAATGGAAGATGCC
AAGAAGCTACTGCATATCATGACAGAGAATGGAGTCGAGTCAAACTATGTCAGCTACACC
ACGTTGATCAGCATCCATTCCAAGGAGGGTGACATGGTAGAGGCAAGAAGGTTGTTCCGA
GATATGGAAGGTAAGGGGTCAAGACCGAGTGTTGTAACCTACAATGTCATGATTGATGGG
TACATCAAGAGTGGGAGCATACGCGAAGCCGAGCGGTTCAAAAAGGAGATGGAGAAGAAA
GGGCTTGTTCCAGATGTATACACTTACGCCGCACTAGTTCATGGGCACTGTGTCAATGGG
AAGGTGGATGTGGCACTCCGGTTGTTTGAAGAGATGAAGCAGAGGGGTGCTAAACCTAAC
GTCGTGGCGTACACAGCTCTTATATCAGGTCTAGCAAAGGAAGGGAGATCAGAGGAGGCC
TTCCAGTTTTATGACAATATGTTGGCAGCTGGATTGACTCCAGATGATACTCTATATTCT
ATGCTTGTTGGGAGTCTTCATACAGATAAAAGAAAAGATGAAATCCCATGAAGAATGTAA
GATTTGTCAGGCTTATTGTTGTTAACAGATGATATCATAAGGGAATTTACCGAATCCTTT
CTCACATGCATCACTGTAAATACCTAGGCTGGTAGTGCCGTCACCATGTCCATGGCTGAT
GTGTGACCGAGATCCGGCGTCGCTACCAGGTCGAGGCAGGACTGCTGAAAGGCTGACACC
AACACTGATTTGGTGCTGTACCAGTCCCATGTCACCGAATACCTCCACATGGAGGTCGAC
ATCATGTAAGGTGAGGGCTTGGTTTTACCTTGTTGACTTATCTGAATGGATAGAAACCTA
TTGGCGTATTATTTTGTTCAGGGTTTCAGGCCTATGCATTTTGAAGTATCGAATGCTTAA
TTGTTATGAGATGAGGGGGTTTGCCTATTTTGGAGCATTTCAATGCTATTTTTTTCGTTA
CTTCTGAGTGCCTTGAATTTGGGTATTCGGCACCTGTATCAGATTATTTGCCGAATAGAT
GAAATGTTAAGTTTGATTTTGAAATTGAATTAGTTTATAAACCTGAAAACTGAGGATCAA
AACATGATGGGCTGAAGTGAGCAAGTGTATACATCATTTATAGCACCACCACCATATAAA
TGCCCGCCAGTCTTCAGTTTGGCAGTCTTCCAATGCGTTGACTTACTTTGACTGTCAAAT
TTTGGACATGTTGGCTTCAGTTTCTTCCTCTGGCATACAATCTTTAACATACTCTGGAGG
TTGTTGTTTTCACTTGAAGTTAGCCAAGCGCCAGAGCCTTTGGATGTCGGTAATGACTAT
TATGGTCTTTCTGTTAGTTCTTGACAGGCATTGGAAGTTAGAACCTCTTTAAACTGTAAC
TATCCTAGTTTATTTGGTAATCATGAATGGTAGAATCTTCAGAGTTTTTGGCCTAGGATT
AGTGGTCTGCTGTTCTTGCAAAGCTGTTTCCTTTCGGCCAGGAACTTGATATGCTTAGTG
GCCTGATTATAGACAACTAGATGTACTACTGAATTACAAATTTATGTCACAAGATTTTTG
TTTTGAACTTTTGATCCACCACTTTCTTGTAATCACAGCATGTGGTCGCAGTTAGGTTGG
CATGGTAAGTTGTAAACACCAATAGGCTGCTGCCATCATGAAATTCTTCTTCCACATTGT
ACTAGCATTAGCCAAAGCAGAAGCTATCAAGTTGGCTTAATCATGCAGTCGATGCATAAC
TTTCGTTTGCTTATAATGGCACATCTATGATACACATTGTTTGAACCATGTGATTCTGAT
TTTACAGCTTTATGCTTGCAGGTCTGGTTTGGCTACAGTACAGTCGTTACTGAAAGATTT
GTGTTCTCTGTTCTTGCCAAATCGCAATCAATTTAAAGTTCTACCACCATTCTGGATTGT
GCAACTTTTACATGGCGCAAGGTAAGGGCGGAAACGACGCGAGAAGCGGAGATCTGGTCT
ATACTAATACTATCCTAGCTGAAAACTTCTGTTCTCAGGATGTTCTGTGGTCAACTTGTT
ATGCTATTGCAGCATTACTTAATGCCCACTGCGGATTGCGCCGTGAGCTTCTTATTATGC
TTGTAATACCATACTAGATTGTTTAGTTTCTCTGGAAGAAAATGGATGTGTAAAATCGGC
AACCAAAGGATTTGATTCAGAGTATTTACGGAACCATTTCTCTAATTCAAGTAGCTTTCA
AAATACAAGGTATATAGATCTGGGACAAGATATTCAATTATTGTCCATGACTCCATGTTA
TAATGTTTCACTCTTACAGGGTCTTGAAACCTCTGCACTCCAGTTTGCTGATACCGACAT
AGTGGTAGTATGTGGCAAGCAAGCGCGATGTGCAAGCCAGTTCATATACATATCTACCCC
TCCTGACCTAATGTGCTAGTACTATGTATTTGCCTAATTTTCTGGGTGGTCCAGATGACT
AAGTTGAGCATCCACCTGCACAAGTTCTGTTTGAATCAGGGATCGCAAATTTTTCATGCT
TTCACCGCAGTTTGTTGTTCCGTCTTTTCATCATCAGTCTTGAGTACTTGGTCTTCTTGT
GTCTGCCCTGTTTGCTCCGTTTTCGAGCCCGCCTTCTCTTCCTGGAGGGCAGACCTGATC
TCTTTGATGTCCTTGAAGCAACAAATAACACAATGTGAGCTTGAAATGTTTCAAGGAAAC
ACAGAGAGCCAGACGGCAGTAAAAAGGTGGACAGAAAGAGGACACACGGATCTCAGGTGC
TGCACTTCAGAAGCAAGTCCCTCCTTCACCTCCACAAGCTCCTATATAGGTAACTTATTA
ACCGTCAGCACAATGAAATCATGAGCATGTACAATACCAACTAAGTTTAACACGAAAGCA
TATCCCGTTTTGAATCTAGTGTTTTCGATTTTGTATCGTAAACGTTGATATATTTTTCTA
TAAACCTGGCCAAAATTTTAAAACCTATTGACTTAAAACCAACCTAATATGCGAAGTAAA
CTAAAAAGAAATGGAGGAGTGCTACTCACGTTGTGGCAGGTCTTGACCTGCGCCTCGACA
TTGGAGCGCCACTTCTGCACCTCCTGAAAACGCAGGCTTCGAGCCAAGGTCAAAATCAAA
CTTCTCACATCACATGAGCCCTTCGATGCATGCTATCAGGGCTATCCGACGGCCCACATA
CGATACCTGTTTGAGCTTCTGGATCCTGGCCAGCAGCTCTCCCTGCGACGAGGTCAGCTC
CTGCAAACCACCACAAAATCGGCCGATCGCCATTAAAACCCTGGCTAGCAGAGCTCGACG
GATGAGGCTCCAAATGATCTGACCTTGATGCGCGCGTCCAGCGGCTCGAGCCCGCCCGAC
AGCTTCTGCAGATCGGGAACAAGCGAGAATGGGTCAGAGCCGTCGTGGAAGGAAGCCTGT
CAGGTTACTGTTGCTCAAGCGCGTGTTCGTACCGTACGAGTCGCCGGCGGCGGAGCAGGA
GGCGGAGTCCGGGCGGCGGTCTCCGCCATCTGGGCTTGGGGAGGGCTTGATCGGTCGCCG
GTGGGGAGGGAGGGAGGGTGGATCGAGCTCGATGGCGACGCTGCTGGTGCTGGCTTTGTA
GTGCCTCGTGGACACTTGTCTGAAGGTGTATTCTAGTTTCAAACGTAAGCAAAGTTGTTG
GGGTTTGGTTGCGGACACTTGTCTCCCGCCTTCGAAGGCATGTTACGTACGTACGTGACA
AAGGGAAGGAGATCTCCAGCGCCTTTTCAGATCGAGATCGAGAGTATGCAGCGTGTGATC
CACCGCTCCTCCCCTTGGGAATCAATGCAAATGGCCGCGTTGGGTGGGTTTGTTTGTAGT
ACTAGCATAGCATCCGGGCTTGAAGAGAACGAGAAGCAAGCGTAGTCAAATTAATGAAAG
ACATATTGTAGAACAAAATAATATTGAGTACTCATTTCCATCTCTCAATTCGAGTAAATA
GCATAAAACTACTACATTGGATTATGGTTCCGACAAACCATCGAATTATTTTTTTTCGTT
CATAACTATCAAGTCAGGGTCAGCTGTTTCAAAAAACCCAAATCATTTGGCGTTTTACAA
TTGATCTATGACCGTCAGAGCCCGCGCGTAAGAAAACTGATTGTTTGACAGTTAACTGAT
ATATGGGGTCACATGTCAGTGTCTCTTCCTCATTCTCTTCAATCCTCCTACCTCCTTATT
CCCTAGGAGGGCGACGGAGCGCCGTCCGCCTCTCCTTCCACCAACGCCGGTCAGCCCTCC
TTCCACCTCGTCGTCGTCGGCCGGCCGCTCCTCCACCTTCACTACCGCCCCCTTCCCCGG
AAGCTCTTCTCCTCATCGCGACCAACAATCCAGCGCGCCGCCCGCCTCGTCCTGCAGCCA
TGGCGCCCCATTTGCCGCCCTCCGCAGAGCCAGTGCCACCGTCCAGAGGCGCCGCCTCGC
ATTGTCGGCCAACCCCCAGCAGCCATCGCTCGCGCAGGGTCCAGGAGGAGGTGGTTCTCG
GCTGCGGGTGGCACAGGCGGCTAACTCCGGCAGGGCCACGTCCATGGCGGCGTCCAACAA
GGCGACGAACTCCTCCACCTGCACCCCCCGACGAAAAGGAGCTCCACGGCGGCGCCATGG
CTGCTGCCCGCGAGCTCCGTGCGGCGGCAGCTGGCGCACGGCCATGGGAGGGACCGGATT
GCTTCTATCAGAAGTTCATAGGGACCCGATTGTGTTTCAAAAAGTTTGCACGGACCCGAT
GGCATTTTCAAAAAGTTTACCGACACTGACATGTGGGACTCACATGTCAGTTAACGATCA
AATAGATGGGTCTTTTAGGTGCGGGACTGACATGTCATAAATCAGTTTTATTTTTTAACA
ACATGGATTTTGGGTTTTTTGAAACAACCGACCTCTGACTTGGTAGTTATCAGCGAAAAA
TAATAGTTCGATAGTTTTTGGAACCATAGCCTGAATTGTAGTAGTTTTATGCTATTTACT
CCTTACTTTTCTACCCACTTTGAACTTTAATCGCTGAAAATTGGACATATTGGTCACTCG
AGCGTGACATGGTATAAATTGATGTTTGGTTTTTGTCGATGATTCTTTTTGGCCCGATCC
TTATCGCAATTTCAATGCCCTCCGTCACCATCACGTAGCAGATTTTGACCACTTATCGTT
GGGATCAGCTCCATCACCATCATGAAACTCGGCAAGTGCTCTGTCATGGTAATTTGCGTT
CAATACCCATATGAGGATTGCGAACACGTCAAAGATCCAGATGATGCACACAAGGAGGGA
TTTACACAAGTTCAGACCCTCAAATTGAGGTATAGCATCCTACTTCATGCTTGTCCTTTT
GATGATCTAGGCTCGTATGAGAACTAGGGTTTGTGTTTACAAGGGGGTCGATCCCAGGAT
CTCCTAGGGGCTGCAACGTCACATGGCATGTCAGAATAAGGTGCCTATCAGTTCCCCCTG
TCGAGCCTTAAATAGGTGGTCGGGCAAGGTTACAGTCCCTGAGCTGTTCGGATAGTTTTC
CTATGCTATGTATGTTAGCTAACAAAGGATCAGTTTGTACATGGGATTCCTAGCCTCATA
TGAAGTGGAGTCCTTCATGTTGTCGCATTAGGCGGTGACACTCTCTAAGTTGTTGGTGGA
TGTCAAGTCATGGGCTTAGCCTGCCCTACTCTAGTTGGGCCTCTTATGTCCTTTGTAGTT
ACACCCCGGTGGCATGAAACCGTCAGTAGCCCTAAAGCTCTTCGAGGTCTTGGCTGATGA
TCTCTTTTTGACTTCTGTGTATGTGAATGACGTTCTTAGGAGTTAATTGCATAAAATATC
AACATTAAAGGCTAGGGTTGCAGAAATCACACTTCTACAGTTTTGTGCCAAAAAACACTA
ATTTCGAGGCTATTTTTTTGCAAAAAATACTGGTCACCCGTTTCGTTCGTTTTAATCACG
TTTATGATAGTTCACAAATAGATAGAGTATCATGGAACCCCCTCCCCCCCGCGTCGTTGA
CCGGAGCCAGCACGCTCAAGCTCAACGGCATTCGGGGCGAGGCCACCGGGGTAGCTGGAA
CCAGCATCGCCGCAGAGCCAACCACCGCCATCGCCGTGCACCCGTGGCTCCACCGGCACA
CTCCATCGTGCTCGTCATCGTGCCTCTCCCGTCGTTGATCGGAGCCGGCCCCGCCAACCT
AGCCACCTTCACACCCAAACCATCCACTCCCCACCCATGCTCGTCACCTTGGCGTTCTCC
TGTCGACCCGCACCTGTTCGGACGAGGTCCGACCGGGAATCCAGCGACTGCCGTCGTTGA
CGGTCCGCCCAGCGAACCAGACCACTGCCTCACCCCCGTCATCCAGGGAATCGTACCGTC
CTGCCCGTCCTCGATGATGCCGGACTGTGGCCGCCATCGGAGGAAGCAGCAGATGCACCA
GTCGTGCACGGGGAGACAGTGGTCCCGAGGGACAAATTTTTTTTTTTTGGGGGGGATCTG
TATGATTGTAAGTGTTGTAGCCAAATTTTTTTGCTTCATATGAACTTCGCCTCCTTCATG
AACAAACTTGCTCCCTCTATGCATGAATGCTAGCTTTATCCCTAGTGGTCCACGACCGGA
TCGGTGGCAGATGAAGCTCAGAGAGGACCCGATTGCTTTTTTAAGGGTGTTCTTGCGAAA
CAAAATGGTATGAGGATGTAATTTTTTTTCCGTGACCTTGTTTGGCGGAACCCACCTATC
ATAATCATGATCAAAATGGCCTAAGTCACTCACTAGTTTTTTTGGCAAAAAATCAGCCTC
GGAATTTGTGGGTTTTGGCACAAAACTGTACAAGTGTGGTTTGTGTAACCCAATCCTTCA
ATGTTGATGTTTTCTGTAATTAACTCCGTTCTTAGAGATAATGATCGGACTAAATGTGCA
CTGTCATTTTGATCGACATACATGCCTTGATAAGCTCAAAAGTACACGAAATAAGATTTT
GAAGAATCTACAATCCGCATAGGAGACGATCTTTAAACCGTCGTTTATATAATAGATGAT
TTTTTATGAAGTCTGAACATGGGGGGTCGGCGCGCCCTGATGCTTGTCCCTCCCTGGTGG
TCCTCCTACCTCTGTTCTTTGGCATATAAATTCACATATATTACAAAAACCGTAGAGGAC
ATCGCAAAACACTTTTTTCGCGAGCGCAAGTCTCTGTTCAGCGGCGATCGCATTTAGAGC
TCCGTTCCGGCACCCTGCGGGAGGAAGGATCGATCACGGAGGGCCTCTTCATCAACCTTG
CTGCCATCGTGATGATGTGTGAGTAGTTCACCATAGACATACGGGTCCGTAGGTAGTAGC
TAGATGTCCATCTCTCTCTCTCTCT