Map Locations of contig_1571247 (8523 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1571247

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_15664 3 2962 bp AK375542 Available Available None
MLOC_15663 1 182 bp MLOC_15663.1 Available Available None





CDS Structure of MLOC_15664






CDS Structure of MLOC_15663






Contig Sequence (8523 bp)

>contig_1571247 8523 assembly3_WGSMorex_rbca.fasta
CCGCCGGCGGCCCCTGCCGCCTCTCTCCCTCTCGCCCGTGCCCCTCCTCTCCACCTCCTC
CCCCTCACTAGGGGCTGTGTTGCGCTCTGGTATGTCTGGTGGGAGAGAAGGAGCTTCACT
CACGGCGAGCAAATCACTGAACCCCCCAGATCGGCGCATGCAATATCATCCCTTGCAAAG
AATTTTGTCAGGGCAAGGAATAAGCAACGAGGTGTTATTTGGCATGGCTGGCAACGACCG
TCTGAGGGCCTCTACAAGCTCAATGTCGATGCTGGTTTCTCTGGTGACTCGAGGACGGGT
AGCACAGGGGCTGTGTTGCGCTCTGATAGAGGAGTTTTCATCGCCGGCTCATGTAGTGCC
ATTTCTTTTGCTGAAGATGCCAGTTCAGCCGAAGCAAGAGCTCTTAGAGATGGACTTATA
CTGGCTAGCGAGGTGGGTGTGCAAAAAATCATCGTTGAGTCTGATTGTCAGGAGGTGATC
GACACCATGTTACTCGACGGCAATTCGCTTGGACCGGCAGCTACAGTTTACGAAGAGTGT
TCTTTCCTTGCAAAGAACTTTAGCTTTATTCAGTTTGTCTTCTGCCCCAGGGAAGCAAAC
ATGGTAGCACATACCCTACCTAGATTTGCTGAACCCACTAGAACTATAAAGTGGATGGAG
GAGCCTCTTGGCTTTCTCATAGATACGCTAGCGAATGATGTAACTATTCTCTCACATGAA
ATATAAAGGTCGCTCTGGCCTTTCCCATTCAAAAAATATAAGTCTTTTTAAAGGTTTCAC
TACAGGATTATATACGGATGTATATAGATATACTTTAGAGTGTAGATTCACTCATTTTAC
TCCGTATATAGTTTTCTATTAAAATCTTTAAAAAGACTTATATTTAGGAATGGAGGGAGT
ATGTAGTTGAAAAAACACATTCACGAGTGTACCTTCGCATCCACAATACTCTCCTTTTGA
ATGATTGAATATTGACAACTGGAACACCGCATGCAGCGTGTGACCTGGCTCCAAGCATGG
CTGCCCTATCTTAAGAGAAAGAGACACGTATGGATTTCCCGTAAAGAGTTGTTTGTGATT
TGGAGTCACTTGCAGGAACCTGGGACGGGAATTGAAGGAAACCAAGTAAGTCTACAAGGC
ATAATTGAATCAAGCCTAATTTCTTCACTTCATCATCATGCATCCTTTTCATGACTAACT
AAAGCATGATTCCTGAGCACAATAATCAACACTCTAAATTATTAGGTATTTAGTTTAATA
AACAGTTACTTTATCCAGTAGAAAAAGAAAACCGACGATGCCATTTATGCATCTACTCCC
TCCGTTCCTAAATATAAGTGTTTTTTAGAGGTTTCACTAATGGACTACATGCGGATGTAT
ATAAATATATTTTAAAATGTACATTAAATCATTTTGCTTCGTATGTAGACCCCTAGTAAA
ATCGCTTAAAAAACTTGTATTTAGGAACGGAAGGAGTGATACGTTAATTATGTAAAGTTG
CTATTGCGATCATGACACGTACCACTTGTAACCAGAGCAGTCAAAAGAAGCAGAGAGGGC
CGTGGTAGCTTTCGTCTCGAGTAGCGCTGAGAAGTCATGGACCTTCCATTCTAAATGTGG
AACATGGGTCTTTCCTAAGCTTGCAGGAGCTGAAATTTCCATCCAAGGAGGCAGCAACTC
GAAATTATGTTCATCCTTGAGAAGATAAAGATGCAGAATAGTTGTTTACGTTGAGATTAT
ATGAATGAAAACCTTGCATACAGTGATTTGTAAGAGGTGACCCCGCTAATATATATTGTG
GTAGTTATCACTACAAGTTTTTTCCCTAGTTTTTTCAAGAGGCCACTTTTCCATGTATAA
ATAAGTAATCTACGGTTAGTTGTAATCAATAAGCATTCAGTTGGTCAACATAATTGCGAG
GGCAGGCAAACATATATACCTGTGCTCCCGGAGTTGCCCATGTATAGCTAGCTCTGCCCC
CTCCTCTTCTCTCGTATTGGTCTGCAAGTGAAATTAATCATGGCGCCTTAGGGAGGGCAT
AATGAACAAGATCCTGACAAAGATACTGCCGCACTTGATATCTTGATCAAAACGGTTAGC
AGGCAGGCAAATACAGAAATTATGCATGTTGCCACAAGGCAGAATCACGACGGTTTGCGA
GGATTTTAAATGATGACGAAGAAAGTCAATATTACTAAGCCGCGTTATATCACAGCCTGA
GATGATGAAAGTCTTTGCGGAAACCCTCTAATCTAATCGTAGAAGGCGAAAGCAGGAGTC
GAGAAAGACCTGGATTTGGGCGCAACGAATGGCTTCCTGGGACGGGGCTTGTTGGAGCTG
CGAGCTGAGAGGGGGTGGCCGTGGGGGTTTATGCTTTTATGGAGGCTGCCTATCCTAACG
ACAACGTGGATCGCAGCTACTGCTCTCTGGTAACCGTACGATTCCGGGATTTTAGGGAAC
AGATGATTGATGCAGTATATTCCGAGCTCCAATATACTCTAGGACTCGGGCTTGGCAGCC
GTTTACAGCCACACAACGAAACAAACACGATTACACAATGAGTTGTCCCTCTAATCAAGA
TTACTGGCAACACTCACGAACCACGGTTTGCTCAGAAAACAGGTGGAGAGCTGGTTTTGC
ATGTCTATAAGCAACTGCGGATTGCCTGGTCAAGTTCTATCAAGAAAAATTTCTCCGCAT
ACACCACCAGAAGAATACTAGCCATGGGAGCGGCTTTGTAACCTCAAGGAACAAGACAGC
AGCTCGACCAGGCCATCCTGTCTGTCACACCGAGAACCAGGCGGAACATACGTAAAACCT
CAAGAATCTACGACTTTTTTTTTGGAAGACGAGAATCTACGACTTCAACTACATGTCAGA
TAGTAGTACAAGGCAAAGTAAGAATGTCTATTTTATACAACAATACAACACACAAAATCT
CCCCCCTCTAAACAACATCCAAAAATGGGACGATAGATGCTCTTTTTCCAATAGATACGA
ATCAATCACTGGTATACCGTCTATGATTCGTTGCTGGGAGGAGCTTCTCTCATGTTGCTC
AGCCGGAGGTCCAGCTTTATGTTCATAGCAGCCAGCTCGGCTGCCAGATACCTGAAGACG
TACGGCATCGCCACCGTCTCCATCCCTTTGTTTGTCTGGCAGGCCTGGCACGCAAAGTTC
TTGGTGGGCTTCACCGTGTTGATGCCCAGCATGTGGCGCTTGGATTTCTTCTGCGTGTCC
GATTTTATTACCGTCGCCGACAGGAGGCTCCCGCAGAGGGAGCACACGTCTGCTACGTGA
TAGTCCGAGCAGGTATGGAGCCTGTCGTGCAAGAGATAGGAAGCGCCGTGAGCAAGGAGC
GCGTCACGCTCCATCTCACCGAACCGAATCCCTCCGCCGTGTTTCCTTCCTCCTATTGGC
TGTCTCGTTACTTGGTCTATACGACCTGTTGTACGAACCTACAAAAAAACACAGCATGTC
AGCGACAACCTACAACAAATGGCAACAAAACCGTTATAAAGGTAAACACTTGTCAGGTTA
TGCTTGAGAACCACATGTTATTTTCAGTATATAAACAGTTGCACACCTGAAATTTGTCTG
AGACCATATGACGAAGGCGTTGGTAATAAACGGGTCCAATGAAAATCTCAAATTTAAGCT
CAGTGCCAAAAAGCCCACTGTACATGACCTCCGTTCCATGATGATTAAATCCATAAGATG
CTAGCATGGGACCCAGTTCATCCACAATAGAATCATATTTACAACGATCTTCACCCTCCT
CTTTGACTGAGCTTGCAAAAGGTGTGGCATCAATGAACTTTCCATGTACACTTCCAGCCT
ATGAAGACAGATGTCAGTCAGTGAAGGTGCAAAGACACAATTCTCTAGTAAAAAGTCAAG
CTAACATGTTATCCATCATTATACGAAGTTTATTCATTGACAAAAAGTAATCCCAGTATC
AGACATAATAAGAAGTTTATTCTCTTAATCATCTCTCGGAAATCAGAACGACAATTGGGT
AGGAGGTGTAAATTTTCTTACTGGCAAAGACGAAATTTATTTCAAAGTTTTTCAATGTCT
GAAAGTAAGGAGCATTTTCACAGAAAAATAAACGCCTGATTAGAAGCAATCCCTCACTCC
AAAAATCAATACGGTTATTTCTGCATTGATGCAATTTCGAGTTTGGTGGCTACTCTTCTT
TAGGGAACTCCAAATAGATGAAAACCAAAGCTAAAGTTGCCACATAGTAAGAGATAAAAC
ACAAGGCCAGCAGGGATACATATAATGATTCAAAGCACCAAACATGCCAAGCATTATCAT
TATAGAAGGTACATCAAACTCATTTTATAGCTTTGTGCATATCAGGAGGGGAATAATTTA
GATATGAATTGTAAAGCTTATGTGGCATCAGTTCTACTTGATTTTAGCAATTCCTTTTCC
CTATGGAGTATGGACTGACCCAGTTGTTATTTCTTTAAACATTCAATACGATATTGGGTT
ATTCAATCTAAGAACACAAAGCAAATATCACCTTTGCTGCTATGGACTCTAAAAGCATTG
CAATTGTCATTCTTGAAGGGAAAGCATGAGGATTAATGATGAGATCTGGCCTCATGCCGG
TATTTGCAGAGAACGGCATATCAATGTCAGGCCACAACTGTGAACAAACTCCCTTTTGCC
CATGTCTGCTGCTGAACTTGTCACCAATTATAGGATTCCTCTTGCGACGCAGACGAATAT
TTACCTGATAAACACATAAAGGAGAAAAGCACGCGAGATAAGAAAAAACAAATCTGAACA
CTTCTCAGAAATTATTTTCATGTAAGCATTTGAGAAATTCAATGTACAAAATAATACTGT
ATTAAAGTTCATTAGTTCATAAGAAGTCACAGGTTTGAAGTGATCTGGAGAAATTAAGAA
GATATTTTTCTCGTGTAACATTTAAGCATACACAAAGTGCCGCTGTCATACAAGCATTTG
AGAAATTCATTGGTTTACAAATCTAATCCTACTAATAATTTAAGCAGCAGCTTTTTTAAC
TTGAGGTGGAGGTGCACTCACCTTCTGCAGGGAACCTTTTGAATTTGTTCCGTTGAGAGC
AACGTAGTCAATAGCTGCTGGCTCTGTCCCCTTTAGTCTGACTGGCCTTATTGCACCGGT
AAGTGTATTATAGACACTATAGTACTGCTCATATGGAACTACTGTCTGTTCACAGAAAAT
ACATCTCAGAGTAAGGACAATACCATAAGAAGAAACTCGACCACTTCTCCTTCCTCTTGA
AAACGGAAAGACTTAATTTATATAAATAGATCAGTACCTCTCCAACCCGAGGAAGGCCAT
CTGAATCAATTACATCGCCCGTGCCCTTTGAAAGAGGGCTCTTGGCAAAGATTTCTGGAA
CATTTTCTGTCCTTTTTGCTGACAAGTCAATGCACTCTGTCTGCAGGAAGAGTTCACAAA
GAAATGTTTATAAAATTTTGATAAGTCAAGGCTCATACTTTCACGAGTTCTCCTAAAAAA
TCCTTGGTGAAGATCTATTTGTACATGCAACTAAAATAGCATTAAATAATCTCGATGTAG
CTCATCTAAATATAAGCATACAATACGATACAGTGTATACTAAGAAAACTACATGTACCA
TTTCAAGCTCTACACGTTTTCACAGTGAAAAATATGGTGGAATAAGAGTACGGCACTTAT
GTCCTGGTTTTTTCAGAGTCTAGAAGATGAAATGAGAGAGTGGTAACTTTGTTCAACTTT
CTTCAGAGTTTACTATATGACGTCTAAAATTCAGAGTTCATTATATGTTACTTCAAAGGA
GACAAATCTGATAAATGATCGGAGAAAAAAGGAAAACAAAAGGACAAACGCTACTATTCA
CAGCAAATTGATCATTTGTGATTCTTCAAACACATGACGAATCTGAGGTTGTAATTATAA
AAGGGGGGCAGACAAGCACTCTAGAGACAAAATTAGTATTTTTCTTAAGTATCTTGTGGC
ACAACTAAAATAGATTTTGTTAGTGGAGTACAAAGGGTGATCCCACTTCATATGTTGCAC
AGAGAAAACCATTGACTGGTCGTAGGAAAAGAAGTCTACATCCCATACCTTACAAAAGGT
GGGGAAAGGAAAAACTGCCTACAGCTGTTTAGGCTTTAAAGCATGCTTTTGAACTCCATA
GATATTGTGTGAAAGAAAAGGTTCTAAGCCAAGCAGCATGAATTTATGCATGAATATTGA
AATTCTTGTAGATAATTGAACAGCTCATAGCCTCACAGGCCATAATTACCTGGAAGATAT
CTCCACGGAACATCCCACGGTCAACAGCTGATTTATTTAAAATCATGGCATCCTCCATGT
CATAACTAAATTACAAGAACAACTTATCACGTCCAGCAAATTTTCTCAAATAATCATACT
GCCATAAGCATGATAGAAGGCTTACCCTGTATATGATAGCACCGCAACAATGGCATTTGT
TCCTGATGGAAATTCATCCATGTGATATTTTTTATATGTAGCTGTTCGAACAATTGGTGA
CTGAGGGGTCTGCAAGCCAAGAAAGATGGTGTATAAGGAGACAATAGTTTCTAACAAGTG
GTGTTAACTGTGTATGCAGGGAAGGGCAAGGAGCAGACGAAGTGTAAGCAATAGAAAACT
AATTGAGTTGCTCGGAAACCTATCCTATTGTACCGAGAGAGACAGACAGATGACATCATA
TTGGTAGAGCGGCGAGAGAAGGCTGTGTGTCTATGCTTAATTTTCCTTTTTTAGCTCTTT
CATGGCAAATTCACAAAACCCAGGCTTTAGATGTATGCTCATAGGCATATAAAGCTGACT
AAGCAAGTATAATACATGTATGAAAATTTAAAAAAAGACAACTCCCTAATGCACTGGTCA
TTTCAATATGAACAGGCAAAACAAACCTGTAGATGGAATGCCTTGACATCTGTACGAAAT
TTTAAAGCTTGGCCACAAAAACCCATAGTTTGCTTTGCCATCTACAGAGAATAGGCAAGA
GGATTAGTCAGTCCGAAAGAGAAAAGCCTCGCCCTTATTTAATCATTATGCATGATCAAT
TGATCATCAATAGGCAATATAAGACTATTGACCTGGCACTGGTACATGTTCCGAGGACTT
TGGTTGTGGTCAGACCAAGGAGTCAGATTTGCAACTACACTGAGAATGGCGGTAGGGTGA
ATTTCTTCATGAGTTGCAGGAAACTTTTCTTTTCTCCCACCGTCCCCACCATCAGGACAT
CGTATCTCCATAAATGCCTAATAAGATATAATAAAAATTCAGTTCTATTAATATTAGTGA
AAGTGAATATGAGGTTGACAGAATTGATCAAAGGAGACCTGCTCAAATGGTCCAATAAGC
TCAATATGTGGCTCTCCATCAGGTAGGCTAACCAGATTTTTCACTGGTCGAACAAATCTT
GCAGGACTTGTAAAAAGATAGAGCCCAGGATAAGCCCCACCGAGACTCAAGGGAACATAG
CCAACTTCTAAATCCTCCGGAGTCTAATGCAGAATTTGAAGCATGACCCACTGAGAGTTA
GTACTTTGCAACAAAATATGTCGCCCACACGAAAAAATAAATGCAAGAGAACAAACCGCT
GGGTGTGCCAGTAGCTTTAATCTTCGAAGATAGTTAACTACTTCCTCAATCTTAGCAGAA
GCAATAGAACCGACAATGCATCCATCCAAATGGACATGCATGATCTCAGGGGGACCAGTA
TGCTCCATCTTTGGCAACAATGGGATCATTCCACCACGAACCAATTCGACTAAAAGTTTA
TCCTTTATTTTCTGAAAATCTTTAATTGCCCCTTCTGAGTTGTAGCAGGATGAAATACCT
GCAAGTACCGACGGTTAACTGATGATAATAAGTATAACATGATGACAATCTTAGCGGCAC
TACTCCCAATCCCAACAAGTTTTGCATACGCATGCATCATGTTGCTAAAGACAACAGAGA
AGATACAAAATTCAATCAAAAAGAATGACAGCTTGCGAATATCTTACGGCATGTGGAAGT
CATATGGTTCAGTAAGCCACAAGGCTCTCCATCCGGTGTATGAACTGGACACAGGAAACC
CCAGGACCTACATAGAAATTATCAGTACAAGCAATGTTGGATGCAAGAAAACAATAATAT
AAGGGACATTTACATATTTCCCCCTAATTTCGGCCCGACCTCATCTTTACCCCTAAATAA
AAACAGTGCTCAACTATGCCCCTCTTCCGTTAGGTGCTTTATAGAAATACCCTTCCGTAC
ATTTTCTATCCAGTCAAAGGCCTCTGACTGGACGGAAAATGTACGGAAGGGCATTTCTAT
AAGTGCACCTAACGGAGGAGGGGCAAAGTTGAGCACTGTTTTTATTTAGGGGCAAAGATG
ACGTCGGGCCAAAATTAGGGGGGGGGGGGGGGGGGATTGGGCCACAAAATAATGCCATTA
AAGGCATCACAAACCACGAAGCAACTTTCCAACACTGGTGACACCGCTTCTTACAAAAAA
AAA