morexGenes - Barley RNA-seq Database

Contig contig_1571244
Source Contig contig_1571244
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1571244 (6104 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_1571244

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_15661	3	2968 bp	MLOC_15661.3	Available	Available	LOC_Os04g02820.2, FRAME:-3, EVALUE:0.0, 13104.m00200 protein elongation factor, putative, expressed
CDS Structure of MLOC_15661

Contig Sequence (6104 bp)

>contig_1571244 6104 assembly3_WGSMorex_rbca.fasta
TGTGAGTTGTGTTTGATTTTTTCCTTGTGTTTTGTTCGGGGTGGGGGGGGGGGGGGTACC
GAAGCACACCTATTGTCATAAATGGGAACACAAAGAAAATTCTTTGTAAATATGTTTGGA
CCAAGCAATAGAAGTTTCAACAGCCTACAGAATTGCAGCGGCAATGATTAGGAAAAAAAG
AACTGGTAATAAGAGTCAAGTTCATGCACAACACTAGAAAGCGAGCAGAGCGATAAATTT
TGTAAGAAAGTGTAAACAGCCACATAGAAGACAGTCGTGTGTGCAAACTTCAAGGCATCT
ATACGCTAGCCAAATTTCTCTCCTTTTCATCTTGACAGAGACACTAAAACCATATTGGTG
ACAACTCGAAGCAAAGTGATGTTATCTCTCCATCAGACTCACGTTTCTTATGATTCTGTC
AGACCTGAAACAAATATTTGCAGCGTTTAAAATCTCCAAGTGCAGTCAAGAGTTCAAAAT
CACTAGAGTAAAAACAGAAATTTCCAGAGTTATCAAGGTTTGCCATTTCAATTGCATACG
TCTTGCTCAAATTGGTGCCAACAATCACCCAAGGGAATATCTTTTGGCTCCCATCAGACT
AATTCATAACAGTAGGTTATTCAAGAGTGAACTTCCATTTATATGTCCAGAGAACATGGA
CAATGTCAAAACCAACACAATTCAGGACTTGAATCTGCCCAGATTGCACTTTGTAAATCG
GAATGCTGATGCATTTTATGGGGTGTTGCTTAAGTTAGATGCAACAGAATTATCAATGCA
AAAAATTCCTCCTTTCACATTAGAAGCTCCCAGGAATATATATCTACAAGCAGAATCAAT
GTGTGTAGTCCTATATCAGAATTTAGAAAATCTCTTGCAAAAAAATGGCAACAACTAATT
TACAACAATCTGCTCAGGTATTCTATAAAACCAGCTGGGGCAACTTATCAGATGCAAGGA
AAAAATTAGAAAAAACTTCTCAAGGTTCTCAAACATGAGAAGAGAATGCAATTAGGAGAC
ACAAAACAATACTAATCAACCACTCAATCAAACATATCATCTAAGGTAAATTATTTGTTA
AATCTGATAAGACACCGAAATAGGCTCAGTACATGACAACCCAAGGAACTGGAATACGAA
AAAGAGTACTAATCTCCTGACAACAGACCAAGTATAGATCAAAAACTGGGCGAGATCATA
GATCACATGGGAGCAAAAGCTTAGAGCTTGTCCTCGAATTCGGAGAGAGGGGTCATCTGT
TCTTTCAACCCCTTCCTCTTGCGGATATCCAAGACCAGCTGCGCCGCCTGTGATCCTGCC
TCCAAAGGATCAGCAGACATCATGTCCCAGTGATCAAACACACACTGCGGGAAGGCCTGG
CCAGACGTCGCAGCCCGAAGTGTGCTGGAGAAACCAAAGGACTCGATAACAGGTAGGTAA
GCCTTGATGTTGTAAAGTGGGGTACCAGGCCTCTGCATCTCCTCAAACACATGCCCTCTC
TTCTGGTTGAGAACGCCATAGATGCCACCAAGTGCATTCTCAGGTGCCTGGATCTCCACT
AGGTATACAGGCTCGAGTAACCTTGGCTTAGCCGTGAGCTGAGAAGCATAAATGACCCTT
CTAGCCGTCGGGATGACCTGACCGCCACCCCTGTGAATAGCATCTGTGTGGAGGACGACG
TCACAGACCTCAAAGCAAATGCCACGCATGTTTTCTTCTGCCAATGCCCCTTCTTTCGAC
GCCCACTGGAAGCCGGCCACAACGGAGTCCTTGATTTCGTTCAGATACTGCACTCCCTTG
CACATATCAACAACCATATTCGGCCCAGTGGTTTCGGGTCCGAAACACCAAATCTTCTTG
GCGAGATCCTTGTCCCAGCCAAACTCCTCGGACAGGACCTTGGAGCGCACCTTGGGATCA
TCACGTGGGCCGATGCGACCATCGTCAATGGCCTCAGCCAGTCCTTCCTCCATGGGGCGA
GCCTCCATGTAGAGACGGTTATGCTTGTTCGGGGACTTGCTCATCACGGTACGGCAGGAC
TTCTCAAGAACGGTCTCGCGGAAAGAGACAACAGGAGGGGAAACAATAATCTCAGCACCA
CCCATGAAATCCTCCTGCAGATCCTTCAAGCAAATTTCAAGGTGCAGCTCTCCAGCTCCA
GCAATGATATGCTCGCCAGACTCTTCCATGGAACAGAGAACCATAGGATCAGACTTCGCC
AGGCGCTTCAAGCCTTCCACAAGTTTGGGAAGATCAGAGGCAACCTTGCACTGGACAGCA
ACGCGTACAACAGGGGATACGGAAAATTTCATTGCTCTGATTGGGCATGCATCAACCTCC
TTCTCGTTTGTCAGGGTAGCATTCTTTGTGATGTACTGATCCAAGCCAACCATAGCAACA
GTGTTACCACAAGGAACATCCTCAACAGACTCTTGCTTCTTTCCCATCCAAATGACTGTA
CGCTGGACACTCTTCATGTACAGATCCTTCTTCTGTCCAGGAACATAGTTTGGGCCCATG
ATCCGGACCTTCATGCCAGTTGCAATTCTCCCGGAGAAGACACGCCCAAACGCAAAGAAC
CTGCCCTTGTCAGATGCTGGAATCATCTTGGAAACATACAGCATAAGAGGGCCTTCTGGG
TCACAGTTTCTTATAGCAGTTGCATAGACATCATCAAGGGGGCCCTCATACAAGTTCTCT
ACACGATACTTTTGTGCTTTCGAAGGAGAAGGGAGGTGGAATATCATCATCTCAAGTAGA
GCAGTACTTGCTGGCAGCCAAGTTTGCATAACACGTTTCATTAAAGGCTTGCCCATTAGC
TCCTTCTCATCAGTCTTCATGGTCACACCAAGCTTGTGTAACATGGGCCACAATTTATCC
TTCTGGTCATTCATGCAGGTGTTAATGATTTGCTTGATTGGATCATAGCAGAACTGAACA
AAACCTCTCTTGCAAGTTGGAGAGCCAGTGCTCTTGTTGGTCCACTTTTTTGTGCTTGGG
TCAAAGAAGTTCTCACCCCAAAGCCTCTCCATCATTTTAGTTTCATCAACCCCAAACTTG
GAGGCATACATCTTAGCAAAGTTCGTGAGAGTAAATGCCCATCCGTGTAAACCAGCCGAG
AAAGCAACAGTTCCCTTCTCTGGGTAGACTTGGACATCACCAAGTTTTGCATCTTCATAT
GTTGCCATAATGACATTGGCGTTCTCAATGACGCGGGAGAAAGTCTGGTAAGCTTCCTCG
CCGTCAACCTGAAGCTCAAGGAAGCATCTGTCCATCTTGTTCACGGTAAGGACAGGCCTA
ATCCTCTCACCAAGGGCTTGGCGAAGCACAGTCTCAGTTTGCACACATACACCCTCAATA
CAGTCAACCACCACCAAAGCACCATCAGTAATACGAAGAGCAGCTGTGACTTCCGAAGAG
AAATCAACGTGCCCAGGAGAATCTATAAGGTTGATCAGGTATTCATTGCCATCTCTCTCG
CCCTTATAAGCCCTGAGTGATTCCTCAGTCATCTCATAAAAAAGAGATATACCCGTGGAT
TTGATTGTGATACCACGCTCTGCTTCATCTGCACGAGTATCAGTCATGCGGACGTCACCT
GCAACTTCTTGTGCAATAATCCCGGCAGCTGCCACCAGAGAATCAGTAAGCGTAGACTTT
CCTGCCGTAAGTAAAAACCATGAACATGGTTAAAACATGAGATGTAATTACAGTGTACAC
TCTCAATACTGAACAAGAAACGAAGCGCTAAAACGCCACAAAGATAGAGCACAGTCGAAG
CATTGACCCACAAAAAGGAGAGTACACAAATGTTGGAATTCAGGGATTACTAACAAAATT
AAAAAATTTAAAACAAAAAATAACAAGATTAACACTAAAACAAACAAGGGAGACAGCAAA
ATGGCCTGACGAGCACACATGATCTACGGAGATTAAATTGCATAACACAACTATGCAGTA
ACACAAAATACAACCAACACATATTAAAATAATCACCCATTTACTTCAGGAACAAAATTA
GCATTAAATCTTGGATGATCAGATAATTCAAATGAAAGGAACAAACAAGTTATCCATTGA
ATTTTACTTTATTGTGCACAATCATGCTTTAGCTAGTATTTGGTGAAAGTCATATGGACT
GCAATTTTCAGGATGAAAATACAATCTGACAGCAGAAATGTAAACGAGAGACAGCATGAA
CAAGCTATAAAGCATCAATACAAAGAAAATATATGAACAGAAATATGCAGTCTGAGAACA
GAAATATAAACAAGCTATGCTGTGAGATAAAATATTTCACAAATCTATGCTGAGCAACTG
TTCGTATAAACAAGAGACAATATGAACAAGCAGAAAAGGATCAACCCTGGTAGATAACAT
ATGAATAAAAACATCAAATACTTATGCAACCCAAGCAGTAACTTTCCCAGCACATACCAT
GGTCGACATGAGCAATAACAGACATGTTACGAATATTATTTTGCTTGTCCATGATGATGC
GGAGTCCTTCTACTGTGAATTTCACCATCTTGACTGCTTTTGATTATCACACTACAAATA
TAAATTCCTGTTCAAAAGTAGTAACCAAGTTAGAATCCATGTAATGACTAAGATTAACAG
TACTAAGAAGATTACTGAATCACCCCAAGGTAGAAATGATTGACAGTCCTAACCAGATTT
GGTAGCTCCTACATTTACATTCTGCATGACAACTAAGGTAAATGTTGTAAAATTAAACAT
TTCGCAGAATAATGAACTTTAGACTGCAACACAAAATTCCCCTATTTACAGAGCAAGAAG
ATCATAAACCAGAGAGTAGAGATAACAGAAGGGAACAAAGCCTCAGAAAAAACACCCAAG
ATTGTGAGAACGCAACTAAACAAAGCTCTTGTATCAATCAATAAAACAAAGAGAAGGAAG
ACAAAGATTGGGTATCTAGTGGATCGCATGAATCAGTAGCATAATACTGTAGTAAACAGA
ACATAATCTCTTGATAAACAAAACACATATTCATGTCACTCTGCAGAAACTTATGGCCCT
GCAGGAACAATACTGACGTTTACGATTCACGTGTCCATATGTTCGAACGCCTAACAAGAT
TCAAGCTCTACTGACCAAAGATGGCTGATCCACGATCCATACTGGAAATAAAATCGAATG
TGAAATAACACCTAAAACGTTTCGGCAGAACGGCATTTATATCACACTCTCGTCTACACA
GACGGTAAAATGCATCAGGGAGAAAAATCTAGGACGTGTGGTATGATGCAAAAGATACAT
CTACGAAAATTAGATCGGCATTCAGCACCAGAACATTACTTGTACCCCCTACTCTAATAT
TAAACTATTCCAGGGGAAGAACAAGAACCCTTGCGAGCTGGACGAAAACCACTCAACGCA
CGGACGATCTAGATCGAGCACAAGGATGGACGTTGTCTCACCTTGAGGATCCCCCTCGCT
ATCAGGATTCAGGAGGAATGAGATGAGGACAGCCCTGGACGGCGCCGAGCGAAGGCGCAG
GAGAAGGACCTAGGCGATCCCCCTGTGGCCTGTGCGCTGTGGGCGACCGGGGCTTGCGGC
CGTGCGGGGGGTTTTATTGGCTGCGTAGTGGCGGCGCCGCGGGAAAGGCGAGCGAATCGT
GGCTGTCCGTGCGGCTGTGTGGCGAGCGACGCCGTCCGATCTGCCCCAGCGAAGGGATAG
TTTGGAGAATGCGCGGTGGACTTGTTCCGAGCTGATTTCTGGGCCACTCGTCAGCTTTAC
TCCTCCATCTCAAATAAAAAAAAATTAAAAAAAAAGAAGTGAGAGTAAATTATAAACTTG
GCCCTTACGTATGGTAAGAGCAACTCTACCAAGACCCTGTATATTTACGACCTGCAAACG
CATTTTACAGTTCGATGAAGTGGGGTTTTATGGGACAAAATGTTGCGCTGCAGAACAGAC
TGCATAATTTGAAATAAAACATTCGCGAACGAAATTGTAACCACAGTCTACATAGAACAT
GATCATACAAACTACTCCCTCCGTTCCTAAATATATGACTTTTTAGAGATTTCACTATCG
AACACATACGGATGTATATAGACATACTTTAGAGTATAGCTTCA