morexGenes - Barley RNA-seq Database

Contig contig_1570881
Source Contig contig_1570881
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1570881 (8305 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_1570881

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_15510	1	2005 bp	MLOC_15510.1	Available	Available	LOC_Os04g46020.1, FRAME:-2, EVALUE:0.0, 13104.m04622 protein GATA zinc finger domain containing protein, expressed
CDS Structure of MLOC_15510

Contig Sequence (8305 bp)

>contig_1570881 8305 assembly3_WGSMorex_rbca.fasta
ACCGGCAGTGGAGCGTCGCGTGCGGGTGGGAAGGGCGAGAGGGGGGAGGGGATAAGGTGG
AGCAGAGCGGGGTGAGGTTCCCGGCCCGCTCGCGCTTTGAGATTCGCGCGCGCGGATCGG
GGGGTTCGGGGCCCGCAGCTCGATTCAATCGATCTTCCCGCGCAGATTTGTATTTGTGGG
CCGTGGTTGGCCCGTTAGCCAGTCCGTGACGGCTCTCCTTCTCTGAACTACGAGTATCTG
AATCTGCTCCGTTGCAAACCTGGTTTTTTAGAAGATCAAGGAAAATGCAAACCTGGTTCT
TTATTTCAAACACTTGTAGACGTGGCAGTTATTTGGAAACATCTATAGAAACGGTCTTGC
TAAATCTCAGTCGACTAGGAGTTCATAATGTATCAATCGGTGTTATATCCGTGAGATATT
AAATTAAGATCCACACAAAAAATTATTTTTATTTTATTTTTTTCTTTCTTACATGTTATA
TCGTTTGACTAAGACTTGATTAAGTATCGGTCGACTGAGACCTAGCCACATCCCTATAGA
AAACAGTTAGTTGGAAACATATACTAGTACAGTATTGACTTCTAACAAGAATTATATATA
TATTGTGAATTGATTAGACGCACAATTCGATCAGAAAGGAGCGAGTGCGGTGAAAGGAAG
GAAGAAATAGGGGGCTGACCGACGAGGCCATGGCAGCAGTGACGGGTCACCCGTAAAGGT
TAACCGGTAGTCAAGAAGATCATGCTGGGGCAGGAATGGTTGCGCACCGGTCATTTTCAT
CATTGTTTAAAGATGTATTCCCTCTGTCAAAAAATAAGTAACTCAATTTTATACTTACTT
TGTACTAAAGTTAGTACAGAGTTGAGTCACTTATTTTGAAACAGAGGGAGTAACAAAATC
ATCTACTAATATATAAAAAAATATGTAGGTAAGCAGAGATGTATCAAACAACTGCAAATT
GCGACTATGAAAACAGCTCCAACAATGAAGAGATGGACAAGAATGGAAGAAGAAAGAAGG
GTGGGTCGGCCATGATGTATAGGCAGACACGGGTGGAAGTAACAACAAGTTGCTCTGATT
TTCATAATGCCAATATATATAATTGTATTATGAATTATGGTGGTAAAAAAAAGCCAAATT
AAGAGGAGGAGGATTGATAATGACGACGGGGCCTGGTGGCAGGCAATGTGACCAAGATCA
CAGCTGATGTTGCCAAGGTCCTGAGGATGTCGTCGTTGAATACTAATACTACTATGAACC
AGTGATGGAGCCAGGAAAGAAATAAAGGGTGTGCACATCTTAAAAAGATAAATCAACCTA
ATCCTTTGGACTAAATTAGTATGTGGCCCACCGTGCCTATACGCTGGCTCTGCCACTGCT
ACGAACAGCAAGTGGAAATGCTAAATGGTTTCAGTGAAATGGATGCACTGCCGGATCGTG
ATTTTCTCCCTGGAATGCCCTCAGGTTGTGCCATTCGGGAAGACAACTCATTTGAAAGTT
CAATGAAACATTAGCATCCGGCCATCTGACACTGCAACTGCAAACGCATGATTTCCTTTT
CCTGGTTTAGCTTCCACTTTGGATTTCTCTTCTTGGTTTATTTATCAAGGTTTATCTTAT
AATTTACTGCATTTTCTACCAAATTCCCGCAGCTACCCGATCGGTAAAATGTGTGTGCAG
CCTCATTGGTGAGTTTTGTTGCAACATGTAATTCTTTTTCAGGGGGACATGTTTATAATT
CATTCGACCAGTCTCATTGGTGTCTTAATTATCTTAATTCAGTACAACTGATGCATTCTT
CAGTTACTACTCTTCTCTCCATGGTGCATTTGAATAGCACTAACAAAAGAAGGACAAATG
GATATTACTCCCTCCGTCCTAAAATAAGTGCCTCAACTTTGTATTAACTTTAGTACAAAG
TTGAGTCACTTATTTTGAGACAGAGGGAGTAGATACAGAAAAGAAATTAGCGCAGACGGT
TGAACTAACAAACGGGTCAAATTAAAACAAACCCCGTTGGAGCTTTGTGATTTAAGAAGA
CATGATATCATAGGTCACATAAAGATCATGTACACCTGTACATATCATTTATCAATGATA
TCATCAATCATTCAAACATAACCTCTGGGATCAAGATGACCTGCCATTCCCAAGAGGGGC
GTGTTATGGAGACACCAACATGCTCAACTGGGAAAATAAGTGAGCCAAGATAAGCAAATG
GTTGAAATCCCTGATATCATTTTCATTTTACATTTCCCCAATAAAAGAGTTCTTCTATTT
TCCATGGTGATATGAGTTATACTTTCTCCAAAAGCCCACATGCTATGGAAACCAACACAA
GCCTAGTCCAAAAGTACCGCTACAAATGTTAGCTGAACGGGCAATTTCGCCAGCGTTGGC
AGACGCACATTGTCAATGTAAATCAGGGCGATAATGACGGTGCAAGCATGAACAAACCGC
ACAAAGCCCTACCGGTGATCGGTAAATAAAGATACCATGATGATCCAAGAACCTAAGGGA
AACTACTGCTACCGCCTGTTTCTATGCTGGTTGCTAGTCTACGGTTGCTTGAGGCGGCCC
TCGCCATCAGCAACCACGTCTGCGGAGGTGGAGCTTCGGGCTACTGAGCTAAGTTGAAAT
GGTTGGTAAAGAAGCTCTGCCTCTGGCTGCCGTGCATTGAGAGGAACCTCCAGCAGCAAG
TCTTGATCAGAATTATCCATGTACTGTGGAGGGGCCAGCATGGATATTTTATCTGGGGGT
AACATGAGTAAGTTAAATGGCGCTCCTCCAGATTTGGGCAAAAATGAACCTTTGAACTGA
GGAGCCATAGTCACAGATTTGCAAACTTTTTTGGCAATCCTCATGGTTCCTTCTGCATGT
TCACAAGCAAAAACAAATCAGAACGCTTCTCATGTTATTCCCAATAAATTAAGGAAATGA
TGAACTGTGAATTGAATACAGAGGACATTTTTCAGATGCTCACATCTAAAGAACAATGTG
CAAGTAGGAATCAGAGGAACTAAGATTGCTGACCTGGGCAGCTTTGCAACTGGCTTTCGT
GAGGCCTTTTGAGAGGCTTCATGTTGGATTTGGTAAGGTCTTTCAAAGCACTGGTATTTT
CATTTCCTCCTGTTTCCTTAGTGTCTTCTCCCTAAAATAAGAGAAACAGACACTTAATCA
TGTACACAACAAAGGTTGGATGTTCATAACAGTGTATACAGTGAAGAGAAAAGCACCAAG
GCAGAATTAGCAAAGGAAAAATGGATAGAAGGAAGGGGGCAATGAGATCATCATAGACTT
GATACCTCTAAAGCTACTGAAACTAAAGCTGAGCCTACATTTTCCAGGGTATGCTGCTTT
GAGTAATGAAGTTTACCCCTGCAAAAGAGGTAAAAAAATCCTTAGCTTCTTGATTTTCAC
CACAATAGCTTCTCTGACTAATAGAATGCAGAACTGTGGATAGCATTATCATGCATCTGT
ATAGGAAACCAATGCACAATACTACTAATAGAGGTGTAGAATACCTTTTAACATTTTCAT
GTGTCTGCACCGGAAACCACTTTGGCTTCTCAGGTGCAGCATTTGAATTACTTGCTCCCT
TGCTTTCACTATGCACAACAAACGAGGCAGTCCCTGAATAGGATTCACTTGTAAGGTATG
ATTTATTATCTGCAGGAACAGAGTTTGCTTCTGAATCTTCCTCCGCTGATTTTGAGTTTG
AACTTCTCAGAAGCATACTTCCATAGCCAATCTCAAAGGAACCCACAGGGGTTGCATTGT
GGTAAATTAGATCTTCCTCCGAGGATCCAGAAAGGTAAGATAACTGCTCTTCATGCATTA
TACAATGAAGATCCTTGACAAGCATATCCACGGATGAAGACTTGGTCCGAGTGACATAGC
TTCTCTTTTTTGATGGTACCAATGACTCCCAAGCATGCGATTGCGCTGAACCTGAATTCA
AAAGATCAGAGAACTATCATTAACATACCTAACCTTAGTTATACAAAAAAAAAGGAATTA
TGGTTTACAAATATGAAATTTTGGTAATGTAAATTGAGCTCATGGTATCACAAAGTATTA
TAGTTTTTTTGGTGCTCGTTATTGATTTAATCAGGTTCATGTGTGGTAAAGGAAGACACT
GATACAATAACTGATGTTTGAAGCACTGATTTTAGGGTCGATGTCATTTGAATACAATAT
ATGGACAATGATTTATCGATCACTATAAGTTCTTGAGAACGGACGATGCAGGGCTACAAA
GTAAGCACCAGTGAAGTGGGGTTGCTGAAAGCCTAAACCGGAAAAGGAAACCTATTACCC
GGGGTCCCCCCTTTCGGCTATCTCATCTGCTGTTCATGTTTCGGTACTTTCTGTAAGTTT
GATAAAAACAAGAACCAGCTCTGCATTATACATAGTTACTAGCACAGACTCTCGTGCAAG
GGTAGTACTACAAGAACCACCTAAAGATGTTTGCAACAAGTCTTAGGGGAGATTAGATAT
AACATTGCAGACAAACATTGAAGTGTGTATTTCTGACCATCCATCTCAAGCTTCAAGTTC
AATGCTCCTACGTTAATTGTTTGAATTGAACAGTCATATAAGTATATAACCCATGACACT
CAACAAGACTGTGAAGAACATAATTTTTTTTCTTATTTAGCAGTAACACATTAGGAAATT
AGAGATTACTGACCAGTCATTTCGCTAACATCAGCAGAACCATATGGGGCACAACTCTCT
GAATATGATAGTGCTGATCCTGAACTAGATCGACTTGGGTCCGCATCCCCCATCTTCCAG
AAGTTTTGATCAGAAAATGCTCCATTCTCCCTTATGCTGTGGCTTGGCTTTTTCTTTACT
TGCCTCTGTTCCTTCAGCCTCAATGTCGGCGGCTTCAGCTTGCTAACTCTAGGTTGCTCA
GCATCAATATCGTCACGAGAATGCATTGGTGTGTAATTCTCCAAGGAACCCTTTGTTCTC
CATCTCGAGCCACATGCATTGCACAGCACTGGCTTATTTAGTGGCCCATTTCGCCAAAGT
GGAGTGCCTGTTTCAGCATTTGCCATATGTAAGAATAAATGCAGTACAAAATAAATATGC
AAGAATGTGCGCGGTATTGCAGGTGTTATTGGCAGCGTTTCCGTAACGAGATTGTATCAG
AATTTTGACAAAATAACGTGTCTTTGCTATCACAAGAGACGGTGGTATCGAGGAACGGAA
CACAGAAGAACACTTCGAAACTACACATTTTTCAAGAATGTGTCTTTGAGACAACAATTA
GTAATTAGTAACACACATGGTCAGCTGCATATTCCAGATTTGTTTCAGTTGTTAGTACCA
GCATGTAATTATTCATTTGCTGCCATAACAAATAAGGCATACCAAATGCAGATTATCAGT
GAAACTGAGCAGCTTGCTTCAGTAAGAGCTAAAGAGCTACTGACCGTATGATGCCACAGA
GGTTAGAGCAAAAGAGAGAAATGATCTGTGTAGATTACACAAAGCAGCAAATGTCTTCCA
CAAAATTAGGCATTTATGTAGTTGCAGCAGCTAAGGAACTCTAAATGTTTGTTTGGCCAG
AGCAGATGGTTCTTTTCTTGTCATATAACAGGAGTGTGAGCTGCATCTAATTGCTCATTG
TTCTGCACAGTTGTTCTAACAAGCATACACCACCACAGTCAAACAATATTCTGAATATCT
GCCAAGATGAGGTGATTCGTTCCTCATGTTCAGAAATTTGCATCCAGAGGCCTCCGAGAC
CTGAACCCAATCCAAGCAGGCCCGGAACTCTCTTCCAAACACCTCAGGTGGTTCGACAGA
TTGCAGCTAACATCTACCAAACAGCAAACGAACAGCAATCAACAAAGAAGAAACGAGATT
AGGAACCGGAGCCCGGGGGGGGCCGAAAGATTTCCTCCGAGACCCGGTCCCCAGATGCAT
AATTCGGAGAAATCAACGCCCCATGACACCCAGCCGCGGAGGAACAAAGGGATAATAACA
ACAGATGTAAAATAGTAAGCAAGGAAAAAAAAAACAGGAAGCATAAAAAAAATTGGTGAG
CCGAAGAACAGGAGCTCACTTGTGACGCCGCAATGACGGCAAGGGCCCTCCTTTCCCATG
CCTCCTGCGCTCCTCGGCCCCCGCGAGCAAAACGAGGAAGAACCGGAGGAATTCCCAGCC
AGAGAAACACGGAAAAACAGAGCAGTTCTTGGGTCTAGTAGAGTAGCAGGCAGTAATCCG
CGAACAGAAAAAGAAGGGGGAGAGGGGGAATCAAGGGGCGGTTCTTGGGTGGTACGTAAA
TCTGTTCAGACCCGGAGGGGAACAATTCTGCAGCCCATGTGGAAGCCGAAGAAGAAGAAC
CAACGGAGGCTGGCTTGCTCGGTAGGTGCTGTTCGTTCTTTCTTTCTTCCTTCTTCTCTG
TTCTTTTAATTTTTTTTTCTTTTCCTTGTGTTCTGTATCCAGTCTTTTGGAGAGGGTGAG
GGGAGGAGGAGGAGGGGGGGTGGAGAGAGGGGAAAGGGATGGAGAAATAATGGAGGAAGG
GAATGCAGCAGCGGAAGGAAGGAAGGAAGGGCGAGATGGTGAGCCTTTGGGTGAAAGGCG
TTTGGGGGTGGAGGAATCCAAAAGGATTTTATTGCTAGTTTAAAAAGCTGTGAGTTTTCA
GTAATGACGCGGCCAAGCAACCAGGGATTGGGCAAAGTTGGACAAGGAGAGGAGGCAGAG
ATACATAAAGAGAGATAGCAGAGGCCAAAGCTTCTTTTCTAGTACTGTACTGTCTTTCAG
CCTCTCTTTTTTTTTTTAGAATTTAGCCTTTGGGGTTTTCATTGTTACTATGATGTAATC
TTGATTCCATCGTTAGTCATGTGGTGTGGACTAAGGGGAAATAGGGGGGGTGTTTTCAGG
AGCTAATTGGTCAATTTGCTTACCTTTAAAGCCCCTCCATTTCTGGTGTCATTGGAAGAA
TCTTTTCCTTGGCTCCTTTGTGTTTTGCCCCTTTAAGAGATAACACATGTTCTTGTTCAC
CAATGCACGTCTATAGCAATGAATACGCCATGAGAGCACACCCAATGGGTCGTTTTTAAG
TTAACAGCCGGCACATGAAATAAAGGGGATCAATTTTTATTGATTGAAATGATGCTTCTA
AGCACAATGCTTTTTTTAATAGAAAATAACAAGATAACTTGGTGGATAGCCTATATGCAT
ATATTAGATATGTGTAGTTTTGTATTGGCTAAAAAACAATTGTTGTGCAATATTCGTAGG
AAAACATATATTGTCGCATAAAAGAATGGAAAACGCGTATAAAAAAACACAGGCCATGTA
TTTTTTCAATGTAGTACTAAGGGCATCTCCAATAACTGTAAGACAGTTGTTGGTAAACTT
TGTCACATAGGATATATGACGATGTGGCAACAAATAAATAAGGAGAGAGATGAAAGTTGT
ACTACGTATGTTAAGTAACGGCTCTTCCACAAGCTTCAAGGTTAAATAGAGAGCAATTGC
ATTTATTCCCTCTTCTTCTATTGGATAATTTAGGTTGGTCATAGTGGGAGTAACTTAGGC
TGGCCATAGTGGGNNNNNNNNNNNNNNNAACATAGTCTTGGGACTAGCAAACATGGTGAT
GTGACAAGTAATTAAAGAGGAGAGAGAGGGTTATAGTAACATAGGTAGATACCATATCAT
GTTAAATGCTATGTTACTATGTGACATGCATGTCAATAAATGAGAACACCTATGATACTA
GTTTATGATNCTATGCATTATGAAGGTAGTATCATGCAATAGTAACATATGCATGATACT
ACTATATGTTACTCCCCACTATGAGCAGACTTAGGTACTAGCATCATGTACTTGCGACTA
GCAAACATGCTGATGTGACAGACAATTAAAGAAGAGAGAGAGGGTTAGGCTAGCCATAGT
GGGAGTACTTAGGTAGTATCATGTACATGGGACTAGCAAACATGTTGATGTGGCAGACAG
TTAAAGAAAAGAGAGGATTAGAGTAACATATGTAGATAGCAGAACATGTTAAATGCAATG
CTACTACGTGTCATGCATATCAATAAATAAGGTCATATATAATACTAGTTTATGATACTA
TGCATTATATAAGTAGTATCATACAATAGTATCATATGCATGATACTACTATACTCCCTC
CGTCTTAGTTTATAAATCATCTTACGAAAATAAAATAATCCCAAAACACTAAGACACGAT
GCATTAACTTTCACCTTGTTTCTTGTTTTTTAACATGAATAAAGGAATCAACCAATAAGA
GACGTGGGGCGTGTATGTTTTTAAT