morexGenes - Barley RNA-seq Database

Contig contig_1570780
Source Contig contig_1570780
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1570780 (7177 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_1570780

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_15472	1	497 bp	None	Available	Available	None
MLOC_15471	3	869 bp	None	Available	Available	None
CDS Structure of MLOC_15472

CDS Structure of MLOC_15471

Contig Sequence (7177 bp)

>contig_1570780 7177 assembly3_WGSMorex_rbca.fasta
GGCGGGCGACGTGGGAGGTGGCGGCGTTGTTGAGCGGATGTTGCGCCGCCGACAGTTGGC
AGAGTCACCGGAAAAAATGGACGACAGCGTCGGCGACGAAGGGGCGAGGGTTGCTGCTGG
ATGAGGGGAGGCCAATGGGCCACCGACTAGCGGGCCCGGAGGAAGCAAAAGGCGAGCGCG
CGCCCGTTTCATGTCCGTGCCGACGCAAATCTGGTTTAAAAATGGACCGAAAATGAATCC
TCTACGGACGAAAAGCGAACGCGCGTTTATTTGAATCAACTCGTTGAATCGACTTTTGTA
TCCGCGTTGATCCAAACGGACGTGAGCGAATGAAATGGATCGCTCGTTGGAGTTAGTGGG
TGATCTTTTTTTATAACAATTAGGCCTTGTTTGGTACTCCCTCCGGTCCTTTTTAGTCTG
CATATAAGTTTTGTGTGAAGTCAGAGTATCTCTATTTTGACCAAACTTATAGAAAAAATT
ATGAACATTCATCATGCCAAATCAATATTGTTAGATTATTTACGAAATATAGTTTTATAA
TGTATATATTTGGTATTGTAGATATTGGTATTTTTTAATATAAATTTGGTCAAACTTTGC
AAAGTTTGACTAGACCGAAATCTAATACGCGGAGTAAAAATGACCGGAGGGAGTACTAGT
GTTTTTGAGGAGATTGGTGGAGATAATCCTCCAATGAATTGGGTGAAACACCAACCTTCA
TCCAATCCCTTCAAATCCCCATTTATCCCCAATACATTAGGTAGGGATAGTGTATTGTGT
ATTGAGAAAAATGCACTATAATTTAAAGATTTAAAAAGAAATGTGAGGATGAAACATGTC
AAATACACTAGAATCAAATGGTGTTATGGGATTGGTGGGGATTGAGGGATTTGATCGGAA
TAATCTCCATAAATTTTCTAAAATACACTAGTACTGTACCAAACAAGGCCTTAGTGTGTG
ATCTTAGGAAATAAGCCATTAGTAGATGTCCTAGAGAATTCCTGGCCGCCGCGGATACGA
ACAGGGAAAGTACCACATGACGCGCACCGAGTTCGCGTCGCCCACACGCACCGCCCTATT
GGCTGGATGGACGGCTCCGCTTTTATCTCCTCCTTTTATTTATTCGGCGCCGAACGTTCC
AGAAGGGAGAGGCGCTTCCGGAACCTACCCCGCGGCCCTACATATACACCGCCACACGCC
CCACCCCCGTTCCGACCTCACGATCCAAAACCACAACAATTATACTACGACCTGCCCCCT
CCCTCTCTCCGTCAATCTTTCTCCCGTCCCCCAAATCTCTCTACCTCGGAGCGGCCATGA
CTCATATCCTTCACCGCGAATAAAAATTGCCTTCTCTGATTCATCTAGTTTCATTGATCC
CTGTCGAAAATTCTATATTTTTCGTTGTTACCGTATGCGTGTTCTGGTTGGATCTGTACT
TCTCTGTTCTGTACGTGTTGTTCCTTGACCTGGGCTGGCGGCTGCACGCGGCGACCAGAG
GGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGGGAGCAAGGGCCGCGACGACGG
GCTCACGCCGGAGCAGCGACGAGAGAGGGACGCCAAGGCGCTGCAGGAGAAGACCGCCAA
GAAGGCGGCGCAGGCAACGAAGGGGGCCGACGACGCCAAGAAGAACGCCGCCGGCAAGAA
ATAGTAGCACCCGGGTTCCGTCCCTGCGGCATGTTGGATCTGGTCTGTCATGACGTCGAG
ATGTTCTGATGTAAAATTCTGTCCGATCTGGTCGCTCCCTGCTTGTAACACAAACTCGTT
CAGCGCCTCCAGATCGGCCCCCGTGTTGTTGATGCCTGATTCGTGGATCTTAAATGCAAT
GAGATTAAGGCCCAGTTCGTTTTAGTTTTTGATTCTTCCTAGAATTACTCATAATCAACT
GTCCCTGAACAAAAATTGGATGCTGGATTGCTATCACTTACATGTTTCGAACAATTTATC
ACTGTCGCCGTCACCGTACCATCATCTATAAATACATTACTTTACACAGTTTAGAAGACA
TTCACGTGTATAGGGAATTTAACTTATATCCCATCCGTTCCTAAATATAAGACCCTTTAG
AGATTGTATTATAAACTACATACGGATGTAGATTGTATTATAAACTACATACGGANNNNN
NNNNNNNTATTTTAGAGTATAGATTCACTCATAAGGTCTTATATTTTGGAACGAAGGGAG
TATAAAATATATTATTTAACTAAAATTATATCATTAAAAAAATAAAAACTTATGTAAAAT
ATATTATTTAACATAAAATTATATTATTAAAAAATAAAACATCTAAATATATATTTTTGT
AATAGTTGGTCAAACTGAGACGAAAGAAGTAACATCGTCCATTTCATTAATGAAGCAAAT
CACAATATTTATGGTTTCATGTAAGAAAAGAAAACTAACAAATCATCTACATCCAAAGAA
AAACTAACAAATCATCTACATCTAAAAAAAATGAAAGGTCTCATCTAAAAAAATGAAAGG
GTTACCAAGGCAGCGGCCAACCATTGGTTGGACTCGTTACGGCCGACGAAGGACGTCAGT
GGACAGCAGGGAGGGTAGTCGGAGACAGCGGGGGAAGGACCTTGGGGGTCGAAGGAATCA
ATGAGGAGGACTGCTTCGGTCGGCTGGATGGGCGGAGGAGCGACTTCAGGCGAGCGGGCG
GGGCGAAGGAGCGGATGATATGGGCTGTCGGGCGACGCGGCGACGGTGGCCGTGTAACCC
TATCGCGAGCGTGAGTGGAAAGATGAGGATCAAGCGAAGGGGAGGGATAGGTCATGCGAC
TCGTTTTTCTGGGCGCGGGTGGGTTCTTTCGTAAATTATCCCTCAAATAGTGATACTAAC
TTAAATCGAAACGTTTTGTTTTGTGGGAACGTCCAGAATCGCGAGAAACGAGGACCTCAG
ACGATTGTGATTCAAGCGATTCTCATATAATTTTAAACAATCACATCGAGTTCTTTTAAG
CTTTTGATTTTGTACATCACGATTGTCCAGAATCTAAGCCAAAAGAACTGGGCCTAATTC
TATCGTAACATCCTCTAAAGCTTCTCTTTTCATCCGAAATATTCGGCAGAATTTTTGACC
GGCATTGTTGTCCTCTGGAAATAAAAATGAGACCAACAAGGAGTAACGCTTGCTGACTTT
CTTATTACTAGATTTTCTTTGTTGACTTTTTAATATTTTTTAATTGAAGAAAACTCTAGA
ATATTCTATTTTACACTTTTGCGATGTGGATTATGTTTATTGTAGACCTTGCGAGCCCGT
AAACTAAGAAAAATTAAACTGATTTACGGTAAATTTGAACAATCACTTTGCTTTGCGTAT
TAGTTTTTGACAAGATGCTAAAGGACGTCGTGCAAAAGCAATCATCATCTTCATCATCGT
TTTGATCATTATTTTTGTTCTTCACAACCGCAAAAGAATCTCATGCAAAAGCCATCATCA
TCTTCGTGACCATCATCGTCAACATCATCACTCTCCATCACCGTCACACATTGCCCCACT
CATCGAAGCCATTAACCTTGCGTCCATCATCCCTTTCTTTAAGATTTCCTTCCTTGCCAT
ATCATGCCATTTTTTAGTGATGTCGTCCATTCCATTGCGGTTCATTGTCATGATCTTGTT
CTTCTCCGTAAGAAGCTTGGCCAAAGACCTTTTTTCCTTGATAAGGGCTTTCCTCTCCTC
AATGGTGGTCTTGTGCAACCCCTCTTCCTTTAGTAAGATCCACTTTTCTTGCTTCTCTTG
TGCTTTCTTCTCGGCCAACTTCTTCTTCATCTCCAGTGTCTTGATCACCAACACCTTATT
TGGTTGCATCATGATATCTATCTTATCGCGTAAGCTTGATGCCTCTGATTCCCTCTTGAT
CTTGTTCATGGCCTTGTTGTCTTCATGCGTCTTGTTCTTGTTTCTTGGGCTATCATCAAC
TTCTTCATCATCATCCATCTCGGTGAGTGGGACTTTCTTCAGTGGGGATTTTTTTTTCTC
AATCAACTTCCACTTTTGGCTATGTTGAAGCAATTTCCAACAATGCTCTAGGTTGAATGA
CCTACCACATGAAGCTTCCATGTCCTTATACCTTTCTCGCGTATTCTTTTCCTACAAAAC
AAGAACAATGCCAACATATGAAAAATGTTTCAAATATTTAAAGTACAATGTGAGAAAGAA
CTCACATAGTATGATTCAACGGTGCCACTTGGTGGTGCATTGCGGACTTGTTGTGAGCAA
GCAATCCAACGGCTACAAACCGGCTTGATGATGTCCCAACGACCTTGAAGAGACATAAGG
TGCCCGGTGTTCTATTGGGATACTTCGCAAGGAATTGATCCTCTATCATTTGTCAATACC
TCTTACCGGTTTGGTCCGTGCTGATCGTCGCATCAAGAGACACAACTTCCCACGCCTTGA
TGAAGATTTGATCTTCCAATGGCGTGTAGTTCTTGGATCTTGCACCGTTTTTGGCTTGCT
TTTGGTCGAACGTCGCCTTGTCAACCTTCATTATCCCATCTTTTTCCTCAGTGTGATCGT
GCACGTCACCATTTGACACATTGTAACCATAATAACCGATCAGTGCTTGCTCGATGCCGA
CGGTGTTGTCGTGCAATAAGTGCACAAACTCGGCAGTCGCATTGTGAAAGCCCCCCGACA
ATTACGACCAGTAATTCACAAACAAATGTAAATGGTGAACAAAGAAAAAAATTCATACCT
TGCACCCATTTCGTCGAACATGTTGGATGCGGCGTTGGCAGGGTTGCTCTTGCGACCAGC
TTCTTGCGTTTTAGACCTGAGACCTTGCCTTTTCCAAACCGACGCGTGCCTCGGAGGAAT
CATAGCGCCGACCGCTGCGAAGGCGGCGGGCATGCGTGCCTGCCCGACGGGGGCTATGGA
TAAGCCGTCCTGGACGACGATGCTGCCCTGCCACTCACAGGGTGGCGCGGACGAGGGTTG
AACAACCTTGGGCGTGACATGGACGGCGACAAGATTTGGCATAGGATTTGGTGCATGGCT
GACCTCAACGGTGATGGACGACGACTCGAAGGCTTTCATGGTGGTGACGGCCGGACGCAG
ATGGTGGTCTGGAGCGGCCGAAGGAAGATCAACGGAGGCAGACCAAATTGGAAGTGGGAA
TTGGCATGCGGAAATGTCCCTCCCGACAAAAATCTCTGCCGATAGGGGTCAAGCTCGGGT
CGCACTCTGATGAGTCCCCTACTCCTATATGCACTGGACCAATTACTAAAACTCGTGCAC
GCTAATTGAATTACCAGGTAAATTTTTTTCTTGGAAATCCTTCTAATGTTCATGAACATA
TAATGTTGCCTAAATTAGATACTTTTGTTTTACTTATGAATGAAGTATCTAGCATGGACA
AGAAGGATGGTCATTAGAGTGGGATCAAGCATGGAGAAAAAGGTGTGCATGCGAGAAAGA
ACAACGAAGTTTCCAAAGATGATTTTCGCACTTTGAAGCCACCATAAGAAGAGCATGAAG
GCTTGGACGAAATATACAAGATGTCACTTCATAAATTTCATCCATAGGATATTATAGGTG
ATGTGTCACCTTATTTTTGGGCCAAGCCCATGTAATTTCAAAATAGTACATTTTAGGCTG
TTTTTAGAGTCGGTGTGTGTGGGTAAACTGAGTTATGGTTGTTTTCGAACCCCTCCTCCA
ACGGGTCACGAAAATCCCACTTTATTCCCCTTAGGGTGCCGTTTAGACTTAGATTTTATT
TAGATTACAAGTTCGCCATTACTGCAACTTCGCGTCCTTCGTTTGCGTTCTACGACAAGA
CCAAGATGCCACAGAACCCCACTTTCATCAATAAATCTTTCCTCTTATATTCGCAATATT
CAGATTGCAATTTCAGTTTCTTGCTTGTTCTTTGTTTGCATGCAGGAAACAGACCCTCGT
GGTTAGGTTGATCATGCTCCGGCATGGTCAATATCTCTCGGATTTGGTTTAGCGATTGTT
AAGGCACGACGTACTCACACGTTCATAGTCGGACCGTCAAAGTCTACTTCACCATAAACG
ATAGCCATATCCCATTGAAAGACAGGGACAACTTCGCCTCTATCAAGTGGTATCAGAGCC
TTGTGCAATTTTCTGTTTGATGTTTTGCTTTGTTGAATTTGCGGTTACATCAACATGTCG
AGTTTATCGCCTTAGGGTCTAGTCATTTAGAGTTTCGAGTTATGTTCACAAGTTTTCACG
CCACCATCGCACAATCTTCAACTTTGCTACCATCCACTATCATCTTCACTGCTCCCATAT
ACCATCACCCACCACCATCATCATCGCATATATCACCACCCACCATCATCATATCCGCTG
CCATATATCACGACCCCATATTCTCCTTTCATCCGAATTCCTCAGATATTCGGATTCCTT
TTGAGACCCTTCTGTTTCCAATTTCGTGTTTCCTTGCATGAGTAAGTTCCAAGAAAAAAA
AAGTCTGGACACCACCACATAGTTTTGAGGCCAAATTTTTGGCGGGTGAAACTATTTTTT
CCTATCCTGCTTTAGGCTTTGCACAGTGTTTTGAGACACCCACTAGTGATTTTTTGTCGC
AATTTTTGGTTGTCGCAACCCCGAATCGTTCCAGGCTTTTCTTAAAAAATAGTCAATTTT
TTATGCTTATCCTGTTTATACACCTTGGGAAGAGTTTTGAGACACTCGTCATTATAGTGA
TTTTCTGAAGAAAAAAAGAGCGCAAAAAACGGAAGAAAAATCCAGAGTGTGCTCTTCCCA
TCATTACGTGCAACATCATGCTTTTGTTGGTGTTCTAGGCTCGTGTCTTGTAATGCCAAG
ATGCGATCCTATCCTTATTTTTGGCACGAGGGCCTCAACANNNNNAGAAGCGCATCTCGT
CGTTTTGCAATGGATATTGTTACAACTACATGTAAAGAAGGGATGAGTATATGGAATTGG
CTTACACTCTCCACAAGCTAATCATGTTCATCTTAATACAAACATACATTCAAGCACCAT
TCACAAATGCAGGGTCCGACTACGTATGAAATCAAACGAATAAAATGATGTCCATCCTTG
CTATCTAATATGTCTCCGTCATATCTATAATTTTTGTTTGTTTCATGCCAATATTATACA
ANNTTCATATACTTTTGGCAACTTTTCATACTATTTT