morexGenes - Barley RNA-seq Database

Contig contig_157073

Source Contig contig_157073

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_157073 (1562 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_157073

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_15453	2	1426 bp	MLOC_15453.1	Available	Available	LOC_Os01g36920.1, FRAME:+1, EVALUE:1e-33, 13101.m03743 protein DEAD-box ATP-dependent RNA helicase, putative, expressed

CDS Structure of MLOC_15453

Contig Sequence (1562 bp)

>contig_157073 1562 assembly3_WGSMorex_rbca.fasta
GTTCAAAAAATGAATAGAAATAAACACTAACCTGCCACAAGGAGTTCAAAAAATGAATAG
AAATAAACATAAACATGTCCTATTTAATTGCGTGTTATCAATAGGCGCTACTTCAGCCCA
GTGAACTTTTACTGTCAATTCTCCTTTACTTGTGCAATACAAATAACTTCACATGTATTA
ACAAAGAGTGCCGTAATTACATTTATCTTTGTATGCATTGGTGCAACGTGTGTTGGATTC
CAGCACACCTAATCTTGAGGAACATTGTTCTGCAAGTGCAATTTGGCGTTTCACAGGATA
AGGTCAACAATATGATTGAAGCTTAGAATAAGAGGCCTATCAAGATTTGAGTTTTTTTTT
GAAACGCGGTCCCTTAGGGCCCGATTCATTAAAAAAGGTCAAAGAGAATTGCTTTGTTAA
TTAACAGAAAACCGGGCAAAAACCGTCACATCATGCCCACAAAAACAAGGAACATAGGAC
GACCTGGCGACCCACACAAGAACACACACATGCTGCCGAAGAGAAAAGCGTTGACGAGGT
TGCAGCCCGGCGTCGACAAAAAAAATTAAATAGTGAAGATTGAGACACTTACTACAACTA
TACTGATTCCTGACTGCACGGGAGACGGCACCAGCCTCAACCCAGTCCACTCTTGATGGT
CTACATTCCGGCTCAGCGGTGCAAGGCGAGGCATACATGCCATTGCATGAAGAACAGCCG
ATCCGTCGAGTCATCAGATACCATAACGGTATTCCACCGACACTGACTGAAGCAACAGCC
ATCACAACATTTGGACTGCAATACCTACAAAATGATAATTTGTGAGAAATATAAATGCAG
GCCAACACAAGAATGAAATGGTAATTCAGAGTAAATATATGTTCAGATCTAAAGGGAAGA
AGGGTGTACTGAACATAGTGGCCTTCCGCTTTGCTTACACTTCCCTTTTTTTCAAACATT
AGTTTTGGACTGGATGTATGGAGTATGAAACAGTCTGCTGAACTAACTTTGCTATTCTCA
GCTTTACTTAGTCAGCTTGGTAATGAAATTCGTGCTTTGCATTCCTGGTATGCAGGTGTA
CTTTCTCCTGACATTTCCCGTTGGAGGGAAATATGGTAAAACTTTCCATTAACCCAGGAC
CCAGAAGCTTCACTTTTTACTCAATGGGGTGCTGCTCCGATTTTATTTGGTTCCTTCCTC
CACATCAGTGCAACATTAGCGCATCCCTCAAGCAATCCTCGGAATGGATGTCATCTGCCA
AGCAAAATCCGGGATGGGGAAGACTGCTGTCTTTGTCCTGTCGTCTCTCCAGCAGATTGA
CCCTGCTGCTGGTCAGGTGGCAGCTCTTGTATTGTGCCACACAAGAGAGCTGGCTTACCA
GGTAGGCTTGTGAGTAAATAAATTCGGCCTTGCTTGTTTTTATGTGCACATATTTTCTCC
CCGTCCAGGCCCTGGTTTGCTAATTTGCCGTCAATGTCTTCTGTAGATATGCAACGAGTT
CGAGAGGTTCAGCAAATATCTGTCTGATTAGAAGAGGGCGGTGAGGAGGGCTTGATGAGA
AG