Contig Data
morexGenes
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Map Locations of contig_1570721 (5473 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1570721

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_15448 2 2704 bp MLOC_15448.1 Available Available LOC_Os02g46450.2, FRAME:-1, EVALUE:0.0, 13102.m05217 protein helicase conserved C-terminal domain containing protein, expressed





CDS Structure of MLOC_15448






Contig Sequence (5473 bp)

>contig_1570721 5473 assembly3_WGSMorex_rbca.fasta
TGTGCATGATCACACAAGCAGTCATAACTTTCCACAACTTTTTGGTGCTCCAAGTTCTAG
CAGGATACCGAACTATGCTCCATCGAGATTGCGGAACACCAAAGGCACGCTCGACATCCT
TCCTAGCGCTCTCTTGCTCTAGGTCAAATCTGTTTCTCTTCTCTCCGACAGGGTTAGAGA
TTGTCTTCACAATAGTGGTCCATTATTGATAGATTCCTCGGCTAGATAGTATTCTTTGTT
GTAGTTGTGACCGTTGATGTTAACATTGATCGGAGGGTTGTTGCCTTCGGCAAGCCTTGC
AAACACCGACGAACGTTGAAACACGTTGATATCATTGTGTGATCCGGTCATGCCAAAGAA
AGAGTGCGAGATCCAGAGATCTTGAGAGGCCACGGCCTCAAGTATGATAGTGCAAGCCTT
GACGTGACCCTTATATTGGCCTTGCCAAGCGTTAGGCAGTTCTTCCACTCCGAGTGCATG
CAGTCTATACTACCAAGCATCCCTAGGAAGCCCGGACTCGCATTGTTCGCCAACAAGCGG
GCTATGACTATAGCAGTCGGCTCTCTCAGGTACTCAGGGCGAAAGACTGCAACCACGGCC
TTGCAGAATCTATACAATGACTCTAGGCACGTAGACTCACTCATACGGATGTACTCATCG
ATAAGATCGTCGGGTACTCCGTAAGCAAGCACCCGGATGGCTACAATGCATTTTTGATAA
GATGAGAAGCCAATCTTTCCAATGGCATCCTCTTTGCACTCGAAGTGGTCATCGTATTCG
ACCCCACCCCCTCTCGAATCCAATTGAAAACAGTTGAACAGCGAATTGCTTGTGTCAAAG
TAGTCCTTTCATAGAAGGAAGTGGTCGCTCTCTTGGTTGTGATTCAACACCGGAACCCCC
AGAATCGAGCCTCGGAACAATGGTCGTTGCCTATTAAAGTGGTCATGGACCAACACGGCA
AGCAGCAACTCCTCATCGTCGGATGAGGAATCGTCGAGTCGCACAAAATGTTATGAAAAA
TAACTCATCGGCGAAGTCCATTTTGTACCTTAATGCAAACTGTCGAATAGCTTACGGGCA
TTGACGACGAAGTTAACCGACGACGGTGGATTGGGGTCGGGGAAGCTACGGTGGCCTGGG
CGGCGATGCGACGGACGATGTGGGTAGGCGCTGGGGAGGTACGGGAGGATGCGTTGAAAC
TGGACGATGTCGGCGACGGGGTTGGGAGGGATGCGAGGGCCAGCTGTAGGCGTTGTCAAT
AGGGGTGGAAGACGAGCAATGTGCCACCGACTGACGGGCCAGGAATAAAGAAAGCGAGCA
TCGTCCGTGTCCGCTTTGTGTCCACGCGGACCCAAATCTAACTCAAAACTGGACCGGGAA
TGGGTCGACAGGCGAACGAAAAGCAGACGCACGTCCGTTTGGATCAACGCGTTGGGTCGT
CATTTCTGTCCGCACGGACCCAAACGGACGACGACAGACGAAATAGGTCGCTCCGTTGAA
GTTGCTCTAACAACACGGTTTCTGACCAACTCAAAAAAGAACGAGAATAACACTACCAGG
AGCACTTCTCTGGCCATGCCATATAGCAGGTTTCTGACCAACTCAAAAAAGAACGAGAAT
AACACTACCAGGAGCACTTCTCTGGCCATGCCATATAGCAGGAGTTTTGAATTTGTATAC
ATACACAAAAAATGAACGGAACAACTCAAGGCTTTAAATATTTTGCGCCTTGACTTGCAG
GTCAAAACCAAGAAATGTACACGGATAGCAGGCAAGAAACTCCCACAGTAATCTGAATAC
ACGTCAAAGATTCAAAGATGATACATCCTCCGTACGAAAATACAAGACGTTTTGCACTTC
AATTTGAACTGCAAAAACGTCTTATATTTTGTTAGAGGTATAATGTTGCAAATCTCTTAC
ACATTGCTGATGCTCCAGTTCTAGTCCTTAACCCCCACATAACATACCCAAAATGTTTAC
CATATATCTCTAGTTCTTGCAACTGTCAAATTTGTCACAAATCCGAAACTAGCAGCACTA
GAAAAAACAATTCAAACATTATTCCTGCTACAGAAGATTACCAATTAGGACATAAATGAA
GCACACACAGAATCCGCCCAAGGCAAATTATTCCTCCTACAAACTTCAGGATCAATACAA
AAGGGGAGAATCAATCATCCACAAGAATCTCAGCGCCGAATTCTCTCAAAAGAGCAATCG
ATCCCAAGTATCTGTTTCACAACGGGGGGGTACACGTCTGTTAATTTTCTAATGCCCGGT
AGGAAAAATGACAGGAATAGATTAGACGGCCGAGGGAGCAACAATCAAGAAATCACAGCA
GGGCTACGACGAGGGCCTCCTCTTTTCCGTCCCTGCTGGCATCTGCTAAGCAAAATTTAC
ATGTATGGTGAAGTTACAAGATCGATCTCTCAACACAGATGAGGGAGGGAGGGAGGGAGG
CTCACTTCTACATCCTAGGATCCTAGACTAACAATATACATACATGTATAGAGAGTACCC
CCAATGCCTCCATTAGTGCAGCAGCAAACGCCATGCTCCAAAACTCATCAGGATTCACGT
GGCCACGCCGACAGCACCGCTCCTGCCAATCATGACCAAGCTTGCAACCAAAACCATGCA
TGGCTGAGCAGCTCGACTCGATATCCTTGGGCTCCCTGCCAGAGACAGAATCTTCCCTGC
TCTTGATAGAAGGGCATGCATGCTATCTAAGCCAAAATGTCCATTTATTCTCATCCGATG
TCTGTCAAATCCACGAGAGGATCCAACTCCTCGATGCCAGCAAGGGAAACTGAGTCATAC
TGGTACGGGGCAAACTCAATGTCAGTCTCTTCTAGAGGAAGATCCCCGATGTAGGTCAAC
TCCGAATCATCGATGCCAAAGTCAGATAGGGACTCTGTGATGGGGAACTCAGCTGCACTT
GTCAACAGTTGCCGGGGGGATCGGCGAAAATAACACTTAACAGCCGGCATTTCCTGCGGT
TCAGCCGTCCTGTGAATTTTCGATTTTGGTGGTCTTCCCAATTCTGAAGCTGCTTTGTGC
TTTCCTGTGGACTTTGAGCCAGATTTATGTCGAGCAGTATCGTTCACATGGAAACCAGAT
GATGCCCAGTGAGAGCCTTCCCCTTCAAAACAAGCTTCTGATGGTATCCTGCATATATCA
ACATTAGAAGCATTAGTTTATGTTCCAGAAGGCTGCTAAACAATATGAAGATTCAAATAA
TTTGAAGCATAATTGCTCATCTCGATTAGAAAACAAGGAAAATAAGGGTCACCAGCACTG
CAACAATAAAGCATTATACACCACTGACCTGAATCTGTTCTCAGCATGTCTATGAGGAAG
CCCAGACAGCAGTGATTGTTCCATCGGCGCAACAGTGCGTCTAATAGGATCTGGTTCTAG
TATGGACATATTCACTACAGATGGAAAGTCTGCCTGGTAAGCATGTCGATCTGTCCGGAA
ATCCAATACTAAATCTAAATGCCTCCGGCGAGGTTCCTGATTGCTTGTTGGTATTGCCAC
TCTTGGACATTGGGCCTGAACATCTGCAAGGGCTGTCCTTACAAGATTAAAGGACGGCAT
GTAGTTTGTCGTGGACCAGTTCTCACTCAATCTAACAGGCTTATGGGTTGCACTAGAACA
AACACTTGCAACACGTCGGGGCTCATGAGCACATTTTGATCTCCAAACAGAAGAAAGAAT
GGCCATGAAATGTTTCTGGAGAAGCAACTCGTTGTTGGGAATTTCACTGATCACATTCAG
CAACATCCGAGTTTGATCCTGAAAGAAGATGTCATAGAGAAATGGTCAATCTGTGGCTAA
CAAGCAGCTGAAAGGCACATAATACAGTTGACAAACACCTGGAGAGAAAAATGATGTCAA
ACTATATGAGCCACGTAATTTCAATATTGTATCAAGCCTAGCATACATATTTACACATAC
CACTTGACTATTTACTCGCTTATGATTTAATTTTACAGAGGATTACTGGTCAGCAGAGCT
ATGCTGACTTGCTTAATGGTCAGATATGAAATTCTCTTCCCAGGAGCAACAGAAAGTTGG
TCAGCGGTTAGCAATTACAAGAGGAATCCAATGCCATGTTGAGTTTCTGAGGAAAGGAAA
TTCTGAAATAAACAGTCAAATGTTTCACTCCAAGATACTTCAATTTAGGCCATATTGTGC
CAGTGGTATGTTTCACACATGCACCATTTCAGACTTCAACCCAGTTCTTTTGGCGGCTTC
TAAAATAAGCTACCCCCTAGGCTTCTAGAAATAAGCCTCAACGAATAGTGGGGGTGGCTT
CTAAAACAAACTGGGGAGGGGGCAGCTTATGCCATAAGCCGCCAAAAGAACTGGGCCTTA
CTGAAAAAACAAATCAGAGAACAACGATAGTACTGGAAAGCATGAACATGCAAAAATATC
CTCGTGTTGGAAATTTCTCCTCTACCAAGAAAACAGTAAATTAACTCACCTCAGAAACTT
TCAAGACAGCCTTCCCGGCCCCAGAAGGAGCCTTCTCACTGTTTGCATTGTCAGTAGCTG
ACAATACATATTTGCAGAATAATTCTCGGAATCTCTCACAGCAATGTACAGGATGACGAT
ATCTTCCCCTGTAAAATGCACCACCAGGTATGGAATGAAGAAAGTCACTAGCGAGTTCCC
AAACAGGACCATACTCATGTACAGTTCCACAAAGAACTGCATCTTCCTCAGTAGTCCACG
AATCTAAAGCACAATCTCGAGGCCACATAAGACCCTTCTTCTTCAACCTCTCAGGCTTAA
TTACCATAACACGTTTTGATGGCATGGATGGCAGGGAATTCCTGCCATCGCTCTTAATTC
TCACTGACTTCGGATCAGAATCATTCACTTCATCCATCAACTTGAGTTGCTTGCCTTCGA
GCGAGTGTGTATGTGATGAGGACTCCGGAGTACAGTTTGATTTAGGGGCTTTCTTGAACT
TCTTCAGGACTCTGCTACTGCTGCTCACTTCCTCATTTCTGGGCATCATCCTTTTACGCT
TATTTGAACCATGATGTGGTGATTCATCACTCATAAGCTCTGGCGAAGGTGCATTGTCAT
CAATACTCATAGTATCTACAGACGTTTCATCAAGCATGGCCTCTGACTCAGATGACACAC
GTCCTTTTTTTGAAGACTTAAACTTGCCTGCCTGCCTTTTCTTCTTCTTTGACTTTTTCC
GGTGACTGCTATAAAACGATGACAAAAGGAAACAGTCATTTATGTGGTCAACAGCAGAAA
AACATATGAGCATTGCATGTATAGCATGATATTACTGCAAGAAGAGTGTGGCTAGTAGTG
TAACAGAGGAGTGTCTAACAGAACTACTCCCTCCGTTCCTAAATATAAGTCCTTTTAGGC
CTTGTTCGGTTAATCCTCCTCCCAAGGGGATTGGAGAGGATTGGAGGGGAATTTGACTTG
TTAGGGATTTAAT