Map Locations of contig_1570703 (7775 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1570703

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_15442 4 4008 bp AK363628 Available Available None





CDS Structure of MLOC_15442






Contig Sequence (7775 bp)

>contig_1570703 7775 assembly3_WGSMorex_rbca.fasta
AAGGTTGGGAGCGTAACATTTGGGATCTATTGGTTATACCGCAATCCACTCGCCTCATAT
CAATGGTTCCCGATGTGCAGATAAATTTTTGAAGGACATCTGCTATATTAGCTACACACT
CATACAAATAGGGACGGTGGCCAAAACTTAGCTCAGGAGGAAACTCATGGAGTTCATGTG
TCCCGGAGTGCCCATGCGAATTTCTCAAGAATTTTCTTTAGGGAAAGTTATGTCAACGTT
ATTACTCACTCTTAAATTGTGAGTATGTTATTACTTTCAAGCTATTTATACAAAATGGCA
CTAGTTCATTAGTTTATTCTCTATTTTTGCCAGTTTTTATGTCATCTCGTCGCGATGATT
CGTTGACTGGATTGGAAGGGCTGAAAGGTCATAAATGGAATGTTAGATGGCAGGGAAAAT
GAGAGATAAGTAGACTTGACAAATAGTGACATTTGCATAAATAGCCAAAAGTAATAGCAT
AATCATAATTCAATGGGTGAAATGATGGCACTCACATGAGTTTGCTTTTCTTATTATTAT
TATGGTCTGCTTTGCATTTTTTTTTTAACAAGGGAAAGGGTCCAGAAGGACCCCGCACTT
CATTGATCAAAGCGATGGGTAGTACATCTTACACAAAAGACCCCGAAGAAACTAAAAATT
ACAAGCTACACCTTGGATCTTACGAAAAGGACCCTGTAAAGAAACAATAAACGCGTTCGG
ATCCAACTGCTCATCATCGGAGCCAATCAACGTCGGCGCACGAGACGAACCACTTGGTCC
GGCAAGACCTCTAGAGCAGAACAACAGACTCCATCTTAGAGCAGCACTCCCTCCCATCAT
GCAATGTTGGCCACGAGGAAAGAGAATGTTCGTCATTCGACCAAACGATATGTCGGATTG
TTGACGAAGACCAATCGACCATGCCAGGCGTCGTAGCTCCATCGAAACCACCATCGTCTA
AGCATGTGATTCCCATCATCTGCCTCTAGTAGAGAGGCCCCTCTCTAGATCACGGGAGGA
CACCACCAACGCTGGAAGCTTGGATCCAGCGTTTCTAAGCACCATGAGAGGAGGTCAAAG
CAAGATCTCACAACAGCACCACAACAACAGAAATCAAGGGGAAGAACCACCACAACCTCC
AATTCCTGGGCAAGATCGAGCTTATTTGGAGGGATGCTGCCAAATCCAGCGACATGCGCT
TCCCTCCACCATGGAGGCAATGAAGAAGACGTCGATGACCACCATTGGATGTTGCCCGTA
TGCTCAAGTGGCTTGCAACCCGACAGCATAGTGCCAATCCACGACATAAAGCCGAGACTA
ACTAATAAACCTAACCTACTTTACACAGGAAGAACGCGAGCACCTCTCCCTAGCCATCTC
GAGGCGGCATCGCCGCTTAAGGGCGACCCCATGCGACTCTCAAGAAGAAAGCGGCAAAAG
AGAGGTGAAGGGGAGGGGAAAGGGGAAAGTGCCCTAAAGCAACTGTCTTCTTTGCATTAG
GCATGCACGCGACGGGAGCATGTGCACCACTAATGATGATGTTGTAATAAGCTCTACGCA
CACGAAGGGGAACGCACGCTTGCTTTGCGTACAATTCCATACAAGCCCTTTAACTGAATC
CAACCTCATGTAGGGGAAACAGGAGTTTGCTACATACGATGATGGCAATAGGTAGGGTAT
GGGCGGGTACAACCTTCTTGTGCCCAAACCCATACCCACGAAAACTTTCTATACCCACTT
ATTTCAATACCCATGAACATAAATTGACACCCATGCCCATACCCATGACGTATCCTATAC
CCAATGGGTATCTAGTGGGTACAATATATAGCATTTAATTTTTTTAAAGAGAAATGGCTT
TGAAATTCAAGTGACGGTTGATGGAAGCCCGATGCAATAGGGAGGTTGTAGTGGGAATGG
GTGATCGCTGGATCGAGAATTTAACACCAATCCAATAGCAAAGAGTCAAGACTTCATATT
TTCAAGGAGTCACATAGGAGTTGGTGATTATGGGCCTATAAGCTGTGGACGGTTTAACGA
AGAATTAGGATGTGCCATAAGAGTTGGATGTTGACCCTACATGTCATATGAGTTATTTTC
ATTTATAAACCTTTTCCAGTTATCCATTGGGTTATCCATGGACATAATTTTATACCCATA
CCTTATCCATATATTTTGCACGTATAGATACCCATTATCCATGGGTACAAAATCTCTCCC
AAGTCTTCTCCATGTCCGTTGTTTTCGGTAGGGCGCCCGTGGGTACCCATACCCATAGGC
AAAACTGCCATCCTTGCATGGTTCAGGAATTGTGCAACAATTAATAACAATCACTGATTG
TGATTGTTGTAGCGCCAGGAACAGATCATGTACCTAATAATTTTATCATATGAAACGCAA
TTCCAAAAAAAAAATGGTATTACATCGGTGCGACCAAATACTACTATGGAATCATGTGCT
TTCAGTTCATTAATGTATGACAATTCTAGATGCTGCGTTTTCATATTTTTGTGTTTCTAA
AACCCTGTGATCCAAAGAAGCCCTAAACTAACACCGCTTATTGAGGCGAGAGTATAAAGA
AAATAAGCCAACAACTTTTTTTTTAGATTATTAATGCTTCTACTCTCCCATCTCTTAGTA
CTGGTAGCAATCTTAAGCAATCTATCTATTACTCCCTCTGTTCACTTTTATAAGACGTTT
TAGACAGTTCAGACAATACCCAAAACAGTTCAAGTTCAGCTGTCTAAAATGTCTTACAAA
AATGAACAGAGTGAGTATTAAACTGCTCCTTAACTAGGGAAGGGCATAAATGCATCTCCA
AATAGTTCTGCAATGCCGAAAACCGAACACAAACCAGAATAATGCATGCACGCAGATAGC
ACACAACACAACGATAAGCAGAATCCTGCTCCAAACTAACAACTATCAGGTTCCTTTTCT
TCCTAGTCTTTCATAAGTTCCACAACTAGCTTTCATAAGGTCCCACAACTAGCTTTCATA
AGGTCCACAACAGAAATGGCCAAAATACGCCCAAGCACTAGAAGTACGGTAAAACATCTA
GAAATACAGAGAGCCTAACTGAGAATTTGCTCTCCCCTGCAGATAACATTTTCATAGTGA
TTGATAACCAGATCACGGTAGCGACCAGATGACTACTTAACTTGATTGGAAGTAATTCAA
TGTCAGCTTCCAAGTCGGTCGGTCAGCAGGTGCCGCCACGGACCAGGAAAGCATCAGGAA
CAGAAGCTGGATCTAGCTCATAGAAGCCACGAAGCGTGTCACCTTTTTCTTCTGTCAGAC
GGTAAGAAGGTATATGGTGCGAAAACCTCAAGTTCTCATTTGCAGGAATCTCCAGAATAC
CCCTTTCTTTGTCAAACCTGAACACAGCTGTGTAACCGTCTACTGGAGTCAGAAACGAGA
ACTTTGTGCTAGCTTCAGTCCGCTCAGTAATCTCACCGATGGCATATTCACACGCATCAT
CGCTGGAAGGAACCCAGTCGGGTGCCCAGTTGTTGTAAATGGCCCAAATTTCACCTACTC
GCGGGTAAATTTCAAAACATTGGCCATTAACTTGGCTGGTTTCTACTAAATGAGAGAATG
CGTCATTTGAATCATACTTGATCCTCCAGTTGCGGATCTTAAATGTCCCACAGCTCACAG
GTATCTCACGCTCCAACCACATCTTCTCTTGCTCCAGTTGAGGGCTAGCTTCGAGCCAAG
ATAAATGCAATCTGAACGGTTCCATATCAACTTTGGTCACCCAGCCGTAATACTTCGGAA
ATTTGTCAAAATCGCTGTAAATAGCCCATATCTGGCCACGTTCAAACTTTTTATATGATC
GCCCTTCTTCAAAGTTATAGAAGTCCGTGTCTGGATATGTTGCAATAGAACTTGGTGAGG
TGCAGAATAGCTGAGAAGAAGAACCAGGCACATTCGCAGTGCCGCCTTTCTGCTTCTGTC
TTGGGGTTCGTTCAAGGGAATCATCTATCCGTTTTCCTCCACTTTGCTGATTTTCCTTTT
GAGCACTTGGTTCATTTCCAGGACCTGGTGTACTAATATCACTGGCGTCAATGAAACCAC
TGCTAATTGTCTTGTCGATAGTAACTGATAAAAACGATGTGTCCAGGTTACTAGGAAGTG
ACACGGTATCAAGCTCAAGAAACCCACCTGCCACACCAACCTTTTCATTTCCTTTTGTCC
TATAAAATGGGATATTGTGCGAGAATCGAAGCAGTTCACTAGATGGTATAACAAAAGATG
ATCTATCAATTGCTTTTCCAAATAGACTGACAAACCCTTTAATCTTGACCAAGGGAAAAA
CAGCAACTCCAGCTTCCGTCGTGAAGTCTGACAGAACCTCCACAACTTCGTACTCGTATG
TCTTATGGTTATCTGCATCTGAACACCACTGCATACTCCAACCCTTATAAAGAGCCCACA
CCTCACCCTTCCTGGGATATATTTCATAGGCACACCCTCTTCTGCCCATCACCCATGGAA
CAACAGTATGAGAAAACATGAGGGCACCTTGTGATACCTCTGTTTTTCCTAAAATAAACT
TCCCACAAGCAACAGGCAGTTCTTTATCCGTCCATCTGTCTTCTTCATCATTAACTGCCT
TATGCTCCAGCCAAGCGTACCGAATAGTGGATTTGGTAGCATTCACATGCTTTATTCGAG
CATAATATCGTGGCATGCCATCACGGTCATCATAAACTGCCCAAACCTGATCAACTGCAA
ACAAATTCACATCCCTGCCTTTATCAAAGTCAAAAAATTCTGGGTCAGGGTAGGTTAATT
CCACAGAATCGCAAGGATTCTTCCCAGCAGCTGCATCACATGTAAATTCTTTCTTAACGC
TTTCCTGGTTCCCTTCTTTGGCAGTGCTTCCTTTCTCTTTGTTGTGTGCTTTGCTAGGGA
CATGAGCTTCACCAGTTTTTACATCAGCACGAGCAACATTATCATCAAACATTTTCTTAC
AACTAGTGTCAGCATTTGAAAACCAATCTTTTAGTGTTCGCCTCTTTTTGCTAGGGGGAA
CCTGGGTACTGTCATCATTGTTTGCCTTTCTCCTAGCTGATCTCCGGGGACTAGGGCTGC
CAGTAGCACCTGGCTCTGCTGATGTATCTACTACCCTACTGCATGGGTTTTTACTATAAA
CAACATCTGGATCACCAGGGTCAGATGCCATTCTTCTACCTGCCTTGTCATCTGCAGTTG
TTGCAGAAGTTTTAGACATATTCCCTCTTGAAAATCCAACATCTGAATCAGCAGGGTCAG
ATGCCATTCTTCTACCTGCCTTGTCATTTGCACTTGGTGCAGAAGATTTAGACATATTCC
CTGTTGAAAATTCAACATCTGGATCAGCAGGGTCAGATGCCATTCTTCTACCCGCCTTGT
CATTTGCACTTGGTGCAGAAGATTTAGACATATTCCCTGTTGAAAATTCAAGATCTGGAT
CAGCAGGGTCAGATGCCATTCTTCTACCAGCCTTGTCATTTGCACTTGGTGCAGAAGATT
TAGACATATTCCCTGTTGAAAATTCAACCCCCCTTTTCCCACCGGCCCTTGCATGGTTAA
CCTTCTCCTCACCACCCACTCTGGCACTCTTCATATGTCCATCAGTTTGTGCTCCATTCA
CCGAGGGATTAGCATCACCATTCAACCTAGAAGGAGAGAACTTTGTAGAACAGTCTGGTT
GACTGGGAAAAGCACTCTGTTCTCCAACACCGCTGATTGAATTTGATGTGAATACAGAAG
GCGCATCCGGTGCATTCAGCTTAGAAGCAACAAAATATTTAGTGCAGTTCTGACAGCGGA
TGCGATGATTTATTACGCCACTGTAGTACTGATATCTTGTTTTACAGTGGATGCATATGG
TCCATATTGCCTGTGCAGCAGTTGTTGATGGAACTGGTGGTTCACATCCTGCTACACTAC
TTCTATTTGCACCAGGTTTCTTCATCTGTTCTGCAGCTGTCTGCTTTGGTACTGCCGCTT
GCTTTGGCATTGGTGCCTGCTTCGGTACTGACGCCTGCTTCGGTACTGACGCCTGCTTGG
GTATTGCTGCCTTCTTTGATTGGGTTGCCTGCTTTGGTTGGGCACCTTGCTTTGGTCCTG
TAGTCTGCTTTAGTTCTGAACCCTGCTTTGGTCCTGTAGCCTGCTTTAGTTCTGAACCCT
GCTTTGGTGCAATTCTAGAAGCAACCCTCCACTTGATGTCATATGCAGGTTTTTTTGTTC
GATCAGACAATGTTGAGTGAGCTTCTGCTACCAATTTAAAAGCAGCTTCTGCACCAGGGT
AACTATTTTTATCAGGGTGAAGTGAAAAGGCAAGCTTCCGGTACTGCTTCTTTATTGTTG
CCTCATCAGCCGTTGCATCCACTTGGAGAATCCCGTAGAAGTCCAACAACTCATTGATCT
TTGCCTCTGCTGCACAATGCACTTCGCAGACAGTCAACAGCTGAGACAAGTTTTCAAGTT
CTGGAAAAATCCTTTGTGCTTTCAGTGCAATCCTTTTGGCACCAACAAAATCTTTGCTTT
CTAACTTTTTTAAAGCAATTTCCCTAGCCTTGACGGCTTCTTCTCTGTTGCACTCCATAA
TACTGCTCCTGATATTGATTCTGAAAACCAACCACACGCCTTCACATAAAATGCTATGAG
CTGAAGAAGGCTATGTAAGACCCAAATTTGATTTGAGTCTCCCTGCTCAAACAATCTCAA
ATCTGGGACCAGCTGACAGATACAAACAAGATCGTCTGGTGTGTCAGGTCCTGGAATTTA
TCAAAGAATGATAGAAGTTATAAGACCATATTTATATCCAATGAAATGCACACTAATGAG
AGCCCATGATGATGATGCTACTTTGTGAAGTAAATAATTAATAACAGACAATGCAGATAG
GATAGATCAACAAACACCTTGTTCTCAGTAGCAATCACTTGAGTGTAATACTGGTTATTA
TGTGTAGGTTCTATTCTATTTGCCAGATAATTTGTACTAAGATCCAAAAAATGAATGATA
AGATTACTGCAGATTTGGGATTTGGAGGGTCTAACTATGGCTAATTGTCATATTTAAGTC
CATATATGCATCATTTGTACAATGTTAACAATCAAACTAGTGCATGGATGAAATCTAAAG
TCAAAGTATGGCATTGAATGCCTGTCAGATTGTATAGAACAACAATTATATATTTTTTAA
CTATGTTGGTACCACTAATGTGCTAATAGGGTCATCGAAGGTACAATGTCACTAATTAAT
CTGCGCAAACAGAGATGGGGACACTAATCAGGCTGTGTAGTTTCTGCCTTCAATGGCTTG
CGATGATACATGATACTGATTTCGTCATTTGGAATGGAACTGGGTCGGCAGCTAGGTATG
ATGGATCTTGATACAGTGGATCCACAAGTATCACAATGTCAAACACTCAATGTTGTGGCA
TCTTAGAGTCTAGTTGTCTATTAAGCTTAGTTTAGAAGTATCCAGGGTGTGTGTGTGTAT
GTGTGTTTCCTGGTAGAACGGTCTGTTTGCGTTCCTAGATGAACCCAGCCTAGTCTAGAA
GTATCCAGGGTGTGTGTGTCTGTTATGATCAGAGGCCGAGTTAGCCAAACTGGCCCAGTT
ATCTTAATAATATTAGGGGCTCAGCCCAAGTTATCTTAGTTATCTTAGAGTCCAAGTTAT
CTTAGTTATCTTAGAGTCCAAGTTATCGAGATTATAAACCGATGTAAACAGCTCTTTTGG
AATCAAGCAATAAGACAATTCTATTGCTCGGCTCC