Map Locations of contig_1570308 (3954 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1570308

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_15279 3 1204 bp AK368614 Available Available None





CDS Structure of MLOC_15279






Contig Sequence (3954 bp)

>contig_1570308 3954 assembly3_WGSMorex_rbca.fasta
GGATCAGATCTCTCCTCTCGTAGATGGTCATCNNNNNNNNNNNATCTTATGTGTGCGTAG
GATTTTTTTGTTTTCCATGCGACCTTACCCATCAGATGTGACGATGTGACTAGTGTGGCA
GCGATGATGGTTGAAAGATGAGCAGGGTCATGTCTTGCCTTTGTCCTTGCCCATCTGGCA
TGCTCCCAAGCTTCAAGTCAAAGGTGCCGCGATATGGGGTGATACTCCGGCAAGGATGTC
AGGCAATAGGCAGATCAGACTCTTTCGTGCAAGGCATGCTCTTTTTCTCCTGTGAGGCAC
GTCATCAAAGTCGGAGTTTCCTCATCCTCGATGCGTTCGGCCAATTGTTTGGCCTCGACA
GGTGGTCTCCCGTGTCCCGTTTGTTCGAAGGGGTCTTAACGGTTTGTCAGCGATGAAGTT
GGAGTCGCTTGCTCTAGGAGAAGTGATGATGCTGACATTGCACACAACCTCGACCGTGTC
CTTTTTCATCGGTGTATGTGGGTCTTGTGTGTGCCAAATCAATCGGGTACCTTCTCCGTG
GGCATCTCGTAGCGGTTTTCGTTGATTAAAAGGACAAGTCATCGTTTTTAATGATCCAAT
CAGGCCCTAAGCACATGGTTTAGAAAAGATGGACAGAGCGTGAGATCTACAACGGGTACT
CGTGTCCGGTTTTAATAATGCCTATATCCAAAAGATTTGCATGTGCCGATCTGCGGATCT
GCCGACTCGTGTTCCATGCTCTAACAAATGTCCCGGCAAGAAAAGGGAGAAAAAATAACT
GCACGCTGAGGTGTTGTGTTTCAGTAGTGGAGTATGCTAAATTTTCAAAATGATTCCCGC
GAGAAGAAACGTTTCAGCAGCGGCAACGCATGGGCGAATCAAGCCGATAGTATACGTTTC
AAAACGGCTGCTGGTTCCGGCGTGGCAGCACGCGCGCCGTTGCCTGATGCCGATCTCAAG
GCGGAAAAGTGCAGACAAGCGTATCGCGGCATCTGCACCCGCACCACCCCACCCCCGGAA
GAAACCAATCTTGCAGCTTGCCTCCTGCTCGATGCCCACAGCTCCCCCCTGTTGCAGCTA
CTCCTACTCCCCTGTTTAAAGGGCGGCCTGGGGGAGAAGGAGGAGCAAGGCCGCCGGTTG
CAGCCACTCCCCTGTCGCCGGTCGAGGAAGGAGATGGGCGGCCTACTCCCGCTGGCGCTG
CTCGTCGTCCTCTCTGCCGCTGCCGCTGCCGCTGCCCCTCAGGTTCGGTTCTTCTCCTCT
TATCTTAACCAGATCCCACATCCGCTGCAAAATCTTGGAAGCTTAATGGGTGACGAGACG
AGACGAAGCGAATCGAACCGCGAGGCGCGAAACCAATCCGGACACACGAGCCGGGATGCA
GGGGTCGCGACAGAGCCAACGGAGGGGCCGTCCTCTGACACTAAGATTGATGCCAACACT
GAAAATCGAATAGCTTGGAACGAAAGCTGGATCCCTTTTCTTCGTGGGGGACAGGAACAA
AAAAAGCCGATCCTAACACCGAAAACCAAACAGATAGCTCTGTTTTTTCTCTGCTTTGGA
TAAAAATGCCGATGTTGCGCAGTTGGCTGGATCACATATCTATGTTTGCTTTAAACATGT
GTTTCTACTTTGTACATGCAGCTTGTCGGAGCTGCGAGGGGCGACCATTCCCTGCCAATC
ATCCAGGTAATTTTCAATCCCCCTCAAATTGACATCATTTTTATGTCTACTCCTACCCAT
CTTCTATTGTTTGCACTGACAGTCAAAATGAATGCTGTTGTGCTTTCACAGGAAGACATC
ATACGGACGGTCAACAGCCATCCCAATGCCGGGTGGACGGCTGGACACAACCCATACCTC
GCAAACTATACTGTACATAGAACACCGTCTTGATCTTGTAGTTGTCATCGAGGCACCATT
TTTTCTTTCTATGTTTGCTGACCTCAGAATCATCCTCTCCTGTGCAGATTGAGCAATTTA
AGCATATCCTGGGAGTGAAGCCAACACCTCCAGGGTTACTGGCTGGTGTTCCAACCAAAA
CTTACTCAAGATCAGAAAAGGAGGAGCTCCCAAAGGAGTTCGACGCCAGATCTAAATGGT
CTGGTTGCAGCACAATTGGGAAAATACTTGGTAAATTCAACTTAGATAACTCAATGACCG
TAAACAGGTTCAACGTCATTTTACTTGCTCTGACCCACACTTCATTTGCTCTTTTTTTCC
CCAATACCTTGGAAAACCCTGATTTCCATGATCAGATCAAGTAAGTCTATGCACATTACC
TTATATCATTAGCTCCAGAGTACTTGCCGAACAATTGAAGATGCTCAAGGTACTATGTAT
TGGTTAACAATGGCAGGGTCACTGTGGTGCCTGTTGGGCCTTCGGTGCCGTGGAATGTCT
GCAAGATCGTTTCTGCATTCATCACAGCGTGGTGAGTGCTTATGGACGATCTGTGTACTC
TCTGGTCTGGTTTTAAAAAGGCATGTTTGGTCCTTTTCTTACAATAACCAGCCTACTGTT
TTTATTCCTTGCAGAACGTTTCACTTTCTGTCAATGATCTAGTGGCTTGCTGTGGATTTT
TGTGTGGCGATGGTTGTGATGGAGGATATCCTATCTTCGCATGGCAATACTTCGTCGAGA
ACGGTGTTGTTACTGACGAGGTATAGCAAATTCTCTACTTTCTGCCACTTCAGTGTCCTT
GTCCTCCCGGAGCAATCCTACAGTATTATATTGTTTTGATCCTGTTATTATAAGTCACTC
TGGGTTTTAACTACAACAATGGGTAGTACTGAATCTGTCATATATCAATATAATGGAAAT
TGGATGGTGCATTAATTATTTATAATATTTCGCTCCGTAAATGAAATTGGTTGGTTAATG
AATACATTTTTTAACAGGTCAGTTAGTGATTGTATCATTTGGCACTAAATGCTACGTTAA
CAGTGTATATCTGAACCCGGAAATCAGAAAGTAGTAGGAGCATATTGTAGTCTTAGTGTG
TCCTGACTATTTGCAAATTCATCCCAGCTTTGTTCAGGCACAGCACTGCAGTACAAATGG
CTCTGTTTCAAGTTTAGGAAATTTCGCTGTAGCTTAGCATACAACAGGAAGTAGAAGAGT
CATCATAAAGATTTCTGCATGATCTTCAAGAAAGATCCTCTGGAAAACACAGAAAACCTA
GCTGAGACTATCTGCACGTCTTTATGTAGCTAGATATTTTTTTTGCATTATCTCATCTTT
TCCTAACTATGTATTTCTTTCAAATCATTTTATTGTATTTTTTATTTAACTAGGCTCTCC
TCTAATGTTTCTTATAAAAAAGACTCAGCTCAGCATACCACTCATCCTTGTACATATTAC
TGTCTTGCAGTGTGATCCATTCTTTGATCAGGTTGGTTGCCAGCATCCTGGATGTGAACC
TGCTTATCCTACACCTGTGTGTGAAAAGAAATGCAAGGTGCAGAACCAAGTTTGGGAGGA
AAAGAAACATTTCAGCATCGATGCATACCAAGTAAACTCTGATCCGCATGACATCATGGC
AGAGGTCTACAAGAATGGCCCTGTAGAAGTTTCTTTCATAATTTATGAGGTAACTTCGAT
TCAGTATTTGATGTTTGACTTGTGCTTTGCCAAGGCTGCTAAAATGGGTCGAAAATTGTG
CAATTACTTTGAACACAAGTTTTACGGTGATTGGCAATTTTAGGAATGTTTCTTTTCCTC
TCAAACCTTGAAATATACAAACATAATATAAGCAAAACTTTCAAAAGCTTTAAATCTGAA
TAAAACTGTGGAAAGAACATGATAGTGGGAGAAAGAGAAACAAAACATACATACTCTAGT
TCCCTCCAAAAAAGGGTTTCCCCCCGCTTTGTATTACAAAGCAACCAACCGATACAGTCA
ACAGCAGGTGCTGGGGCGGAAGCAACACAATCACACCCAAAAGAAACGAAAGAG