Contig Data
morexGenes
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Map Locations of contig_1570289 (2937 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1570289

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_15272 2 1708 bp MLOC_15272.2 Available Available LOC_Os05g23350.1, FRAME:-3, EVALUE:3e-42, 13105.m02368 protein glycosyl hydrolase family 10 protein, putative, expressed
MLOC_15271 2 977 bp MLOC_15271.1 Available Available LOC_Os08g45080.1, FRAME:+3, EVALUE:4e-30, 13108.m04915 protein expressed protein





CDS Structure of MLOC_15272






CDS Structure of MLOC_15271






Contig Sequence (2937 bp)

>contig_1570289 2937 assembly3_WGSMorex_rbca.fasta
AAAATAACTGTCTTAAGCTTAATACAATTTTGTATTAGAGCTAGTACAAAGTCAAGACAG
TTATTTTGGGACGGAGGGAGTATATAGCTAGCTTCTGCGCCAAATTTATGTGTATGTGTT
CTTTCTTCTCGACAGGTTAAGGTCCTTAAGGACCAATACTTTGCAGAAATCGGTGAATTG
TACAATAAGATATCTTTGAAGATACAGTATGTTGACAATATTATACCATCCCAAATGCCA
TCTGAGAAGTACGATAGGATCAAGAGCTTTAAAATAATATTGAACCGTATATTGCAAATG
CTGCAAATTAGCAAGAGTGCTATCCAACCCTCCATGAGGGACAGAGTTCCCCAATACGAG
AAACAGATTATCGCCATCTTGAATTCACAAAGGAAGACACTGCATCCACAAATACAGCGT
TAGTTTGAGCCACCTGCAGGTCAAGCTCCTAATTCTAGCATTTCGCAGCAGCAACAGCCT
TCCAAAAAATTGTTGCAGCAACATGGCAGCCAACATGCTATGTTTGTAATTGTTGGCTAC
CTTACATTTCCATTGGCATTTGGTTCATGTTTGCGCAGATAAATAAATCATGCATCCACT
CTTGGAGGAGACCCAGTAAACAAGGAGCTCAGACACAGAGCTCCATGTATGCAATGATGA
TGCTGATTTCTTCTTGTTGGAAGGAATGTGCGAGAGTCCAATTGTGGCGTTGAGGTTGCT
TGTTTCTGCTGGCTACCCTAAATGCTCCCGGCGGGATATCATTGTGTCTTGGTTCTTTAG
GTGTACAAATTGAAAAAACTGTGCTGCAATTAATGATCCGGCATCAGGAACTCGGATGAC
GTCTCTAGCAAAGCAGGGTCCTTTTTCGTAAAAAAAAAAACTTTTTCGTAAGCAAAGCAG
GGTCAAAGCATGGCATATTGTTGTGTGGTCTTGCTGAGTCCATGTAAGTGTGAGAAATTG
CAAGGACATGGGACGCAAAGTCACAAGACTGGTTTGAGGAAGTTTCAGTTGGAACTCAAT
AATTGTTGCTGGGAAAAGTTGTGTACGTACGTGCTTGATCAGTTTCTTATATTTTTGTGC
TTGCGTAGCTGAATGTGCAGTTGCGATCCCCTGGTGCTTATAATACCTTCATTTAACAAT
GGTTGATATACATCAAGTGCTTCTATAAATACAACACACTTACTTTCTCCGTCATAGTTT
AGAAGACATCGTTAAATTGACGTGTAATTTCATAATAGACATGGTTTAAGGCGCATTGCA
TTTACTCCTACCAGCTAATTAGTACTTTGTTGTAATACTTCTTAGTATGAATGCTATTTT
TCAACTCATCTCACAGCCAACAATAACCACCTAGATGGTTCCAGACAATTTCCATGCACG
CCTTCTAAACCGTGACAGAGGAAGTACCATTTTTCAGGACCCCAATATTAGGGTACATGT
AGTTCATACCCTGAAAAAAAGCATAGGCAAAGTTCAAGTCTTATCTGACATCGAGTACTA
CATAATTGCACCTAACAGGGGTTAAATTGCACACACTAAATTTTGTCCAAATATACTCAT
GCGGATCTAGTTTCGAAGAACACGTCTCGCGGGTTTCAACGGTGAGAGCTGACCTTAATT
GACTCAAAAGTTATGATTTAAAAAAATATGAAAACCCGAATAAAATGTGTTCACATCTGT
TCACATGAGTGAAAATTGCACATCCACAAGTAGGAAAAAAGTTGCACACTGTCATGTAGT
TGCATATTGACTCCTACGACAGTTGCATCAAACGGGGATTAAGTTATACAAAAATACAAT
ATGTGCAAACACACCCATGCGAGATCTTATTTCGAAGAGCACGTCGCAAAAATTTCAAGA
GTGAAAATGAATCTTAATTCCTCCTTGTGGTTTAAAAGTTATGACTTTAAAAAGAAATTG
AAATCCATATCAAACTTGTAAACATATGTTTTGCACATATTTTCTGTTTATATGTTACTT
TTTCTCTCTAACATGAATTATGATTTTCCTTATACTATGATTAAGGAGACAGATGATTTT
CTTTTATGGATTAGAGACCAAAAATTTCCTATTTGGGCTGGCCGCTCCGGAGGGTTACAG
AGCAGCCGACTGCTCCTTAGACGCGTCCTAATATTATTACGTTACTCAATTGACAAATAT
TTTACTCCCCCTGTCCCAAAATACTTGTTGTTGTAGAGAACTATATTAGTTTTCTCCAAC
AAAAAGTATTGTGGTATAGAGGGAGTATATATTTTTCTGAACTGTCAGGATTTCCATATT
CATTTAAAAAAATTGCTCAGTTAATTAGAAAAAACCGGACGAAAACCAGATTACGAAGTT
ATATATGAAAACCGGACAAAACCATCATAACAATTGAAAACCAGATTACAAAGTTATATA
TGAAAACCGGACGAAACCATCATAATATAACAACTGAGCGACCCACACAGATTTAGCATT
ACAACACCTTAATTTCTCTCACAAAATACAATACCTTTACCTTAGAAATGTGAAAATTAT
ACAACCTTATTCCTTGACGTGTCGTCCCTTCAATCACCATGGATGTAATTAGATTGGTAA
GAAGTACTCCTACCTTAGATAGATTCACCGTCAGACATCCGCCAAATCCACCAGGAGAGG
AGTGTTATCCCCTTTCTCCACGGTGAAGGTCTTGAGCATCTCCTTCCCCGTCGCCGTCGT
CGTAACCTCCACGACGTATCTGCCATGGAAGCCCCTGAACTTGAAGTTCCCATCGTTGTC
GACGTTCCCGCGCGCGTCCGTCTTCCACTCCTTGTGGAGATTCATGAGCATCTGGCCTGC
CTCGTTCACGGTGCCGTCGGCGTCGACAAGCCAGGCGTCCTTGCGCCACATTTTGCCCTG
CATGATGCCCCAGAACACGATGCCCTCCACCGCCGGGTGCGCGTACGCCTCCCGGAG