| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_1570064
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_15181 |
6 |
2870 bp |
MLOC_15181.1 |
Available |
Available |
LOC_Os11g47890.1, FRAME:-3, EVALUE:3e-128, 13111.m04780 protein GRAS family transcription factor domain containing protein, expressed |
CDS Structure of MLOC_15181
Contig Sequence (8293 bp)
>contig_1570064 8293 assembly3_WGSMorex_rbca.fasta
AATTTGACTCGGGATGACTACAAGTAATGGTGAAATTTCTTCAAGTTTCAGACGGACGGT
TAAGGAAGAGCGGTGATGTTGAGTTCNNNTAACTCTTATGTGCGACACCCAATATGAGTT
GTTCACTTTCACGCAATATGCGACCCATTGTTGGTCCTCGTCGATGACAAAGTCCTTGTG
GTATTCATTCTTCACCATGTCCCTGGCCATCTTAACAGTCTCTTTGTCCAGCGGCAGCTG
CCTCAGGCCTGCCCGTTGGTTCCTGACTTGCCAATGCCTGAATGTCTCGCCGCGCTCCAC
CCGGTCCTCTCCCTCGTACGCGACGGCGTTCAGGGCGACCCACCCAAAGACGCCGCGCTC
CAGCGCCAGCCGCAGCTCGCTCTCCCGCGGCATGGTCGCATCAAGCATGTCGAACATCGC
AGAGTAGAAGAAGAGCGCCCCTCGGAACCGTGACAGGAAGAAGGTGCCGTAGGAGCCGTT
CACGGTGCTCTGGACGAACACGTCCGGCTTCATCCTGCAGACGTTGCTGAGGACGACGTC
GCGGGGGTTCGGGCTGCCTACGACGACGCACTCGTCCATTAAGGTCCTGAAATTGTACAG
GTCGTTCACGGCAAGCACCTCATCTTCTTCCAGGTCCAGGTCCTCGGCGCAAACGGTCTG
CCACTGCGCCAAGATGGCACGGTACTTGAATGGCACACCGAGCTCTCGGGCAATGTCGGT
CAGCCGACCACCGACCTCCTCCATATGTCTTCCGGGGTGGAGTCCGGGCTGCGGGAGGTC
AATGTGGGTGATCCTGACTTCCGGCGAGCCGCCATCCCTCGCTGCCAGCGAGCGCAGAAG
TTCTGACCACTGGAATCCATAGCAAAAGCCATAATCAACGATGTGCAACCTGCTCCTCCC
GGCCGCCGCGTTGAGGATGGCCCTATTGGCGAACAAGATGGACACATTCCTGAAGCAGCA
CGTCGAGATGAATGCCTGGTAAGCCTCTGAGTGCACCACGGCAGAGGTGGCCTTCGCCGT
AATCGTCCCATACACCTGGCTGCCTGTGCCGGCGAGCCGTGCCTCCAGCCCCTCAGCGAA
CCAGTAGGCAAGCCGCTGTGTGCCGTCGCCGGCGGGTGAGGCGTGCAGCTGGATCTCCAT
GAGCAGCTCACCTGCCCTCCGGCGATCATCCGTCGTCGCCCTGGCACAGTGGATCAGCAG
CGTGTGCAGGTCAATCACCCGCGCCTTGCTCTTCCTCCCCTTCTTGCTACTGCTCCCGGT
CTCGTTGTCCATGGAACTGCACATTTGATCGAAGTCGAACACCTCGCAGGCACGAGCTCC
GACGGATCCGTTCGTCCTACTGGCATCAGCCTCCACCTCGTCGCTCCGGTCCTCGCGGCC
GCTGCCACTTTTCTCTTTCGGCTGGTCCTGCGCACCGGTGGTCGTCAGCTCACAGTTCGT
GGGCAAGAACTTCTTGGCCTCTTCCATGCCCTTGAGGAAAGCAGTGCTGAAGATGTGAGT
GTTGTCCTCTCCATTGGCGAGCAACAGCAAGCTGCGGACCTCATCAACGCCCTTGAACTT
GAAGGTGGCCGGGCTGGGAGAGTGCACGTCGCTGGCCAAGGCGCTCCCTTTGGATGCATG
CGTGCTGGAGGAGAGGATTTGGGCAAAGGGACGCTGGGCTTTGAGGAGCGCCGGGTTATC
TTGGTCAACGTCGTCATCCTCCTCCTCCTCCATGAGGATTTGTGCGATGTATGGGAGTGC
CAGGTGATCCTGCACGGGAAACCGGTTGCTGTCATCGTGGGCGGGAGCAGCAGCAATGGT
GATGGCAATGGCAAAGCTCTTACTGGAATGAATGGAAGGGAATCATGGTGTGTAATGTTG
CTCTGGTAATTAAGCTTCTCCCCTTGGAATCACCGAATTGTCTCCAACCAGAAAGAACAA
AAGTGAAATTGTTTTCCTGATCATCTAGGTGTGATGTGACATCCTTGTACACGAGAATTA
CATCGAAAACAAATTGATATTTTTAAAAATAAAGAAGGAAAACACACATGTACATGTTCG
AGTACTATTTGCATTTGCAAATTTTTGTGCAGTGCAAAAATTATAAAATGATGAAGGCTA
ACATAATAGCTTTTTTGCACGGAATTTATTTTATAATTGAACTTAATACCCAAATATGTA
CATGTGTTCAATTTTTGTGAAACTTTTTAAGTTTGCGAACAGACTTTTTTAGAGGGCATA
GGTGAGATCAGATGCCAAAACACTGCACTAAGCATGACGTGTTTTACTCTGCTTCTGATG
TTTGGCAAAATGAAAGCGCAGCATACATTGACACATATGACTCACTAGTCCCGAGTCCTT
AGCTACAATTCAAATTGTATCTCAGTTACACGCATACATAGTTACATCTACTACTTTGTT
GAACTTGAATCTTGAAGGATAAAAGTAGTGCATAAACATAATTGTTTAAGTGGAAGCTTA
GAAATTATGCTGATATGTCAAAAGAGTAAATAATATGCTGGGAGAGGCCAAAATATACCT
AGTTAAAATCTTGAAGATGCTATAGTTTGTAATAAACTTACTGTCTAGAATTGTTTTAAC
CATGTTAGGGATGAACCATCCACATTCAGACATAATGGCAAATATAGCTAACTACCAGGT
ATAGAAGAGTACCAGATCAATCCCAGTAGGATAAAAACCATCAACAGTTCAACACCATCG
ACAGGCATAATCAAATCTCAAGGGCACCAGTTAGCCAAGGAGATGCTTTCATCCAGTCTG
CATCCCATCTGATCAATGTATACTACCATCTTCTCATCCATTTCTGGCTCAAACTTTAAA
CTAAACGATCCTGGCAAGCAACAGGAAGCACTGTCGACGGTGGAAAAGACGCCGTCCAAG
GTTAAAAAGCGCAGGCTCTGCTACGGCGGCACAGGCGTGGTTCCACTCCCAGAGCTGGCC
GAGACCCTGTCCAGCCTAGCGGCCAGGGCAAAAAAATGGCGAACTGCTGCAGGAGTGGAT
GCGTAGATTTATTATACAGAAACAAAAGTAACAGCAGCTTATATCTCTGTTACTTTTGTT
TCTGTTTACGCAAACCCCCTCATGGTTTTAATAAGAAAGATCATACACACTGTAATCCAT
GGCTCCGGAAAGAAATTATGTTGTGATGCATACCTGCACGTATGTAAGTTGGGATATACA
GTAGTTTTCGTGACAGTGCTACTAGCTAACAAAGACCAGGAGGAGCTGTGGGAGAGATGA
TTTTTTACTTCTTCTAAGCAAGCAAGCACAGAGAATGACAGAAACAGAACCCAAACTGAA
TTAACAGCGGGCAGACACGCACGAGCTAATTAAAAGCTGAGGCCGAGCTGCAGCCCAAAC
GCGGCGTGGAAGAGGAAGAGCGTCATGATGCTGCTGCCGAGCAGGCCGTGCGCGCCTCTC
AGCCCAGGGTTCCCCTGACAAAAGCAGCATCACATCACAGGTTATCTATCTATCGGCGTG
AGCCATTGCCATGCAGGAGTTTCAAACTGGCAGTTACCTCGAACAATGTTGGCAGGAGCG
ACTGCACGGTCAGGAGCGCAAGGCCGATGACCCCGGTGACCGCGTGAGGGCTGCAGATCA
AAGCCATTCCAACAGGTGAAGCCAAGCTGTGGTTCTGAATTGTGAGGGGTGTGTGCACGC
CACGCATGTATGTACCTTTCGAAGATGGGTTTGCCGGAGGTGAGGAGGGCGGTGACCCCG
CCGGTGGCGCCGAGGGCGAAGAAGAAGAACATGCCGCCCAGGAGCTTGGGGTGGAGGTCC
TTGGCCTTGGCCTTCTCCTCCTGCATTTTGTTGGCGCAGGTGTGTCAGGCTCATATTACA
AGTGCTGGTGATTTGATTGTTAAGCATGTCACTCATGTATGCTTACGGGGTCGTCGGAGA
GCTTGATCCTGAACCCCAGGTACGTCCCGTACCCACCCATTGCGAACAGCACCACGGCCT
GGAACAAGCAAAAAAAGCAGAGCGGGTGGTGATGAAGGATCTAGTATGAATTATAATACT
AGATTTCTGTGGTGAGGATTTATAATTACCATGTTGCCGGGGTGGCCCCAGTGCACGAGC
CAGTCGGGGAGGCTGAATGTCCTGACCAGCTCCACGAAGGGCTCGAACGCCGCGGTGATG
GGCTCCGCCCCGGGCAGCAGCGCCGCCAGCAGCAGCGGGTACGGCGCCAGCGAGTAGAGC
CGCGTCGTCGGCGTCCTCGTCTCGCCCTCGCCGACCACCACGGACAGCCCCTCCCGCGGC
GTCTCAGCGGCCGTGGCCTGCGGGGCGGGCAATGCCGCCCGGCGCGTCGGCGCACGACGA
GGACTCAACGGCGACGCACGCGGGCGGAGGACGAGGGAGCTGCTCGCCATTGTCATGGTC
CCCATCGCCGTGGCTCTCGTGCTGCTGCCGAAACCTCTGAGGAGACGTCGAGGGTTTTAG
CCACCAGTTGGGTGACGATGGGTAGGAGGATAGAGTTGGGGTCGAGGAGAAGGCGGGAGC
GTGGAGATAGCCGGGCCAAGTGACGCGAGGAGGCCACGCGCATACCCACCCCACCCCACG
TACCCTTGGTAGTAGGTGAGGTGACACACAGGACAAAGTCACGGGGAACCCATGATTTGC
TTTGCCACAGGAAAAGAGAGATCTCGTCCTCGGTCCCTACACTCCCAGCGACAGCTGAAC
CAACACCATCAGAGAAATGCAGGCTTAAAAACGATATCAATCTAACAATCACTAACACCC
TAAGCATGTCGACGCGACAAATTTTCGAGTAAACGTTAGCAATTCATCGCGTGGAGCAGC
CGAAGCGTATGCCTAAAATACAAAACCTCTGTATATTTCCAGTTCCCGGCCAATAACTTC
GCAGGCCGGCAGGCAGGCTAATCGGAGAAATCCCGCAAAAATGAGCCCAGCTCCTAGACA
AGGTTTCCGTGGGCCAATACCAATAACCGTTGTAACCCCAAAAAAAAACAAAAAACAGAG
ACCAGAAAGAATCATCGGTCGGACATATACGAGCATCGTGCGTAACGCTGGCGCTGTTGT
ACAGGGAGGGGAGGAGGCGCGGGCCGACCGGCGATCAGGGGCTGAGGGCCACGGCCACGC
CGAACCTTGCCGGCGAGCTCACCACCTTGGGGTCGTACTCGGCCGACAGCGTCACGTACG
ACTTGGGCCTCCACTCGTGCTGGCAGAGCAGCCCGGCCTTCCCGCTGTTGCTGAACCTGG
TCTTCACCGTCGTGGACGGGTCGAGCGCGTGGGAGCTCCCAATGGTGAAGTAGTTCTCCT
TTGTTTTCAACCTGTGCATTACCTCGGCCGCCACCGCGCTGGTCGGGCTGAACAGGTGGA
TGTAAGAGGCTTTCAGCGTCTCCCCTTTGTCAGCCCTGTGTATAGCAAAAAAAAACAAAG
CAAGGTTTGTTAGCAAACGGCAAGCAAGGGCTTTGATAACCAAAATGCATCCTGTCATGT
TTCATCAGACTTGCAGAAGATCCCCAATATAGGAAAGACATATCAGATGGAGTTTGTCAA
GAGAATAATGTTTGTAATCCTAGAGACAGACATCTCAATGCATTGTCTGGTGTTGCTGCT
TTAAAAGTTAACAGTATTATCCTATATGATGATATTTTAACCATCCACAGGTTCAAACTT
TAGCCCAACTTGAAGCTTCCGCTTTAGACAACTTAATTAGTCAAATTCTTAATTCTAAAG
CAATACCGAACAACTATGTGGGCAAATTTTGCAAGCAGAAAGGTGTAATTGGCTACATTC
AAGCAATGTGTCACAATGCAGATGGTGTATGCCTGAGGCCTGAACAAAGCAGAAACTTGC
AGAACTTACAATAGTAAGGCGGCAGAAAAATCATCTTTGGTATAGCTGATTCCTGAGTTG
TACTTGGTAACAGAAGCTGAAGTACTGTCAAACCCAACCTCACCACCGACGGCGAGTTCG
TTTGTGCCAATAGTTGTTGCCAGCTCGATTACAGGTGCCGACGTCAGCCCAATGGTTGAA
TTCAGTGCGAAGCGATCATGAAGGTATTGCAAATCGAGCTGTCAATGAACAATAATTAGT
AGAAAAACACTGGAAAGTAACATAATATGGAGATGTGGTGGGGTTGAATGTTGGTTACAA
GCCAATTCACAGGCAATAGATAAATATAATGTGAAAAAATTTCAAATCCAGCTTATCCAG
ACTAGCTGGATGTATTACTAGTTTGCTATAGCACCTACTTCCCATATTTTCAGTAAAATC
GATTGTTCCTCCAAAGCAAAATATACCAACCTTCCCTGACTTTTGATCAGGAACCTTGAA
GCCGAAAGAAGTCTTCAAACCAGGGACTACTTCATCAAAAGTGACCGCGGTTGACACCTG
CAGGAGCAAAAACTCTAGTAAGATACACAGATAGACGATGCTTAACTCTCACATGCCATA
AGTTAAAAATATTCAGTCTTGAGAAATGAAACACTGAGCTAAGAACACAGCTGCATAGAT
ATGATAGTCTATCTAAATCTCACATTCAGAAATCAACAAGTTGGCTATGTCAGCAAATTC
TTTTATAGCCTCAAAAACGGAAGGCAGTCCAGCGCTACATATAATGTTCATCAATCATCT
GTTTAACAAAAGCCAAATTAAAAACTATGTCCTACTCATTTTGGCACTGAACGTTACTTA
GTACTATCCTCTCATATACATTTATGAGGTACAGGGCCAAAATAGCAGCCCTATTTGAGA
AACTATAAGCAGTACTATAGTGTAGTCTTTGTACATAATACAGGCATGTAAATAAGAATA
GAGAAGCAAACTTTACAAGGATCTTACTTTGGAGTCGCAATCTATTGTGACATCAACAGT
ATTTCTACCACTTTTATGTTGTACCCGTATGTCACCGATGAAGAGTTCATCAAACTTCAC
GCCAGCAGCTGTGACACTCTGCAATATAGTAAAGTAAATAACACGGAAACAAGTAGTTAG
GACATTATCTTCACAAGAAAAAAACTGCAATAAGCTAAATGGCAAGTGTCTTACCAACCC
AAATTCGCTAGTTGTTGACCATGAAAACTTTTGGTCAAAATTGTAGTCCTTGTACAAGAT
ATCTATCAAGACAAAACATATGAGATGAGTTATTGGAAAACACTCATAGATTCAGATGAC
CAAAGGTACAAGCAGACGAAAGCTTAATAATACTGACAACCAACATAAACAAAGCACAAC
ATTAAAATCTGTATTTGGTAGGCAACATCAGATAAAGGCAGGAAACAGTTATTACTCAAA
ACTATTTATATAAAAGAAAGAGATAATAATATGAGCAATCAGCAGCCCAAATCCCACTCC
GCAGAACAGTTGGGTATATACAGGGTTTCCTCAGAGTTGAGCCATTATTTTTCTTTATTA
AACACAGTCCATCTGCGCCGATCATAGGAATGCAACAACGAGTTACAGTTGGCAAGTATA
TCTGGCATATGGGACTACACATCAAATTAATGAAGTAACTGAAAACGAAGTCGAGACGAG
AGTATCTATCTATTAAAAAATTGGCATATAGTTACCAGACAACATCAGGTAAAGGCAGGA
AACGGTTATTACTCAAAACTATCTCTATTACAATAACGGTTTACAGTTGGCAGGTATGCA
TGGGACTACACATCAAACTAATGCACTAACTGGAAAGGAAGTTGAGACGAGGGTATATAT
CTACTTATTATCATCCATTCAGAAATTATCGTATAGCTCCACTGATAATGAGCAAGGCGA
TCATTAAGTGCAGTGGATTCAAAGCGAGCCCTGTGTATCTTGCTCATATATGCTGCTGCT
AAAAGATAGCAAGAATACACTGCATTCTCAGGAACAGCCACATCAAAATTGAATCACCGA
GGCGCACAGGCGCATAGGCTGGCATGCGGTGCGGCGATTGAGTGCCGGGGAAGAGGAATA
CGCCTACCTCTTGCTTTCTTCCCAAAGATAGGGAACGGAACCGGGCCTTTGCTCATCCTT
CCCAATTAGCAGCAGCAACTCGAGCCCTATTATCTGTGCGTGGAACCGGGAAAAAAAAAA
CTTGACTGTATCAGCAACAATGATCAATCGACGGCACGGGGAAGAAGCGGGGGCGGATCC
AGACGGCGCGCCGGCCACGCGGGAACCGCGGGGAGAGATCAGTGAGGTTTAGCTAATCGC
CGGATGCAGATAAGGGATGCTCGTACCTCGAGAACCAATGGGGTAGAGGGGGGCTGCGGC
CGGGGGAGGGAGACGGCGGGGGCGCGATGAACGGCGACGGCGACGGCGACGGCGGGGGCG
CGATGAACGGCGA
