Map Locations of contig_1570020 (5652 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1570020

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_15172 1 530 bp AK249781.1 Available Available None





CDS Structure of MLOC_15172






Contig Sequence (5652 bp)

>contig_1570020 5652 assembly3_WGSMorex_rbca.fasta
GGAGCAAAGTTATTTGTGTGGGTGCATGTCCATGTCTTCTGCTTGCGCCAGGGNNNNNNN
NNNNNNNNNNNNNNNNNNNGGAGTCCTCCTGGTTCGATAACCTCACAGTCTCCGTGTAAG
GGAAAACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACCAACGAGGAGCGAG
AAGTACATTCATCATTTCATCATCAGAACCGCATAGAAATTGAAAATTGAAAAAAGGTTG
AACATGAAGCGACTTAGCTGGTAAATGTGCTCGGTGTGACGTGGGCTGAGCTTGTAGCGG
GTCAAGGTCCCAACCCCAAGCCGGTCCTGAGGTGACCGAGTGAAGAGCTCGGCTTGATGA
GGTGGTGATGCAATTCAGCCGATGTGTCAAGGCAAATCCCCCGGCCCAGCTAACATGACG
AAACCAGTCGGCTGGTGATGCCGAAGTCCCCGGAGCAGGTTGATGAAGAGATGGCAAAGC
CCCCGGTCTAGCCGAGGTGACGGAGTAGGTCGGTATAACGACTTTAGATCCCCCATGCTA
GCCTATGTATCGAAACATGTCAGCGTGGTGGATGTTGGCTTGAAAAAACGACAACGCGGT
GATGTCAACGCAGGTCAAAATTTGTGACACGGTCAATGCTGGCTTGATGAAGCAACGGCG
CGCATGACCCATGCAACCCACGGATGACGAGGTTCTCTTGATGTTTATTTGTCCCTCGCG
ATGCCAAACTCTTGGTCGGCTGACCGAGATGATGAAATTTTTCCTCCAAAAAGGACATTT
GACAACCCGTTCATGAAAAAGATGAACTCTGGTCGGATTCGTTTTCGCGAATTTGTTATA
TTCATAAGACGTTTTACGGACTTTGGACGGTCGGATCGGGCTGAAATTCTGAGGGGTGAT
CGATACAGGGATTCCATAGCCGATGAATGGTGGGATTTTCTAACGGATGTCCGAGATCGA
TACTGTATCCCTCTTCCTAAACTCATCCAGATTGCCGTCCATATTGGACAGGGCTCAGGT
ATATCGTAGATAGCCGAATATTCCTGCATCTGAACGCGACGAAATTTTGTAGGGTTGTTG
TAATACAATTCTGCACAATTCCACTGAAGCAATATGAAAACGACGCTCGAGGAAATGTGG
ATGACAAACACAAATTCGCTGTCCAGAAAAAACTGCTGCCAATCTGCACACGAGCCATCA
ATCCTTTGGCGATCCTACAACGGAACTCTCAATGAAAGCACCAATGTCGGTTTCAAAGCC
GACAGATCTTGGACAGGGGGTCCCAAACTGTGGATCTTGGATTGATGGGTAACAGGAGAC
AGGGGAGACGATATTTAACCAAGTTCGGGCCCTCTTGATAGAGGTAATATCCTACATCCC
GCTTTGTTTGTATTGATGATGGTGTATCAAGTAGAGAGTTGATCTACCTCGAGANNNNNN
NNNNNNNNNNNNNACCCTAGGAGTAATGATCTTAATCTTGTAACAATCTGTTGACTTGCA
TGGCCTCTGCTTATATATTACACTAGAGGCCTAGGATAACAAGAGTCCTAGTCGGCTACG
TTGGTGGAGGGAAGTCCTTGTCTTTATCACCAAGTCATGTGGAATCTTCCTCATATGTCT
CATCGGCTATCCGAAATGGCCAATGAGTCTGGCTCGTAGAGATAGCCGGCGACCCGAGGA
CCCCTTACTCCCGGACTCACCCAACTTGCTAAGCACTCGATTCCCACTAAGGACGCACAC
CACAAGAGGAACATGACTAGTTCATGACGACGATGTAGAACATATTCAAGCATCAACTAA
GCTAAACGTCAAACATTCAATTTTTGCCATGATTGAATATTTGCCTCATGATAGTTTGAT
CAAGTTGGTTGTCACTTTATGGGCAATTTGGAGAGCGCAATGAAAGTCTATTCACGATGG
AATTCTCCAAAGTCCACATGCTACCCACTCTTTCGTCATTGCATTCATATCCGAGATTGT
TACCTTACAAGCTCATGTGACGGTGCAGGGACTGGTAGCACGAGATAACGACAGGACGAT
AGGAGACATGTATGTATGGAAGGCTCCAAAACCCGGGATGGCAAAGATACACATTGATGA
AGGGCGACCGAGGAATGACAGAACAGGGGCTTCGATGGCGGCTGTCGGGATCATGCAAGA
ATATTTTTGTTCTTATCGGCTATGGTATCTAGGGACATGACTAAACTAGTGATGCTAGAA
GTAGTTGCTTGTTGTGAAGGTTTAGCCCTTGCACTTGATCTATCCCTAGAGCGAGTGTCA
TTGCATGTGATTGCAAACTAGTTGTCCACGAGATAAAAAATGGCACCCACGGGAGATACA
TCACAATCATGAAAGAAATTAGTGCTAGATCAAGAGAGTTCACCAACTACGAATTCATCT
TTCAAAATCACATTATGAATTTTGAGGTCCATAGTTTAGCTTTCTTCTTCTTCTTCTTCT
TTAGATGTAGGTTGAGAGTTCACCGACCGCGAATTTATCTTTCGAAGTCGCATTACGAAT
TTTGAGGTCCACAATTTAGCCTTTTTCTTCTTCTTCTTTAGATGTTGGTTGCCACTCGTG
GTTGGGGGTTATCTCATGACCCTTTAATTATTCCCGTAAACCGTACTCGTCGTTAATATT
GGCTTATCGTTTAATTTTTTGTCTCCCATGGATGCGCTACCCTCTCTCTCTGGTGTTACA
CATGTGCATCTCACACCTCACATCTCTACACACGCAACGCAGCTCACATCCACACATGAC
CTTGTGCCTTTGACTTGGCCCTGTCGTCGCTGCGCTATCCACTGGGCTAGCCACCCACGA
CCTTCTCCCGACATTCCTATGCAGCCTGTAGGTCTGGCCGCCACCACACTCGTCACCTTG
CACGCCACTGCGCTCGCCGCTGCCGATCTCCTCCTGCTTCCCCAACACCCTCTAGCCTTG
GGCCGCCGCGCTCGACGCTGGCGAGTTCCACCTTGGCTTCCCCGCATAGCCTGTGCAGTG
CTCGGTCAAATCGGGAATACCCGAACCCGATTTTCGGCTACCCGAATTGTCGAGTATAAA
TTATTTTGGAGAACCAAATAGAAAACGAAAAAAGTAACCAGTGAACGTTCGCTAGGGGGA
AACTTCCAGCGAAAGCCCTAGCTGCCATACGATCTTAATCCTAGGGTGCAGTTTGAATGA
CTTTAAAAAACTTAAAATCACACAAATGCCATGGCAGTTTTGCACAAAAGCCATCCAGGT
TTTCCAAATGCACTGAAAACCGCCCGGCGATCGTTCGCGGTTCTGTGGCGGCGAACGTTC
GCCAGATATGCCCATCCCATAGAGGAAAAACCGACCCGAGATTTCGCAACCCCCTTCCTT
CCTCCCACCCCTCGACTGACGCAGCGAGGGAGAGAGGGGAGGGCCAGTCGTCGGAGGAGC
AGATCGACGGGGGAGGCTTCCCGGCGATACGATGGGGAACGCGTCGTCGATGCTGACGCA
GTACGACATTGAGGAGGTGCAGGAGCACTGCAGCTACCTATGTATGTCATCGATCCCCAT
CGACGCCCCCTTCGATTTGGTGGTGATTTCATCGATTCCTGAGTCTTCTTTTTTCTTTTG
CTCCCGATTCGGACGAATCCAAGTCTCGCAGCAGGAGATCGTGTCGCTGTACGAGCGATT
CTGCCAGCTCGACCGCAGCGCCAAGGGCTTCGTCGCCGAGGACGAGTTCCTCTCCATCCC
GGAGTACTCCACCAACCCGCTCTCCCAGGTCCGTCCCCCGTCCTCCCCTTGTCGTCGAGA
CGGCGAAGAATTTTCTTCTCCGGCTTGCTTTGTCCCTTTCGTGCCAGCTCCCGCTGAATG
ATTGACTCTACGAAGCAGATCCATCTTGTTTTTGTGTGCTGTCCTTGGCATTACACACAC
TACTTTCCTAGTTGTATTGTAAACAATTCTGTCTACAGAGATGTAATAGTACTGATTTGA
CCAACACTTGGAATTCCTCAGCAATTAAGTATAATATAATGGAGAAAAAACTAATTAGAT
TTCCCCACTCCATCAATGAACTAGGTGTGTCTGAATTTTTTTTATGCCAATTGCCTCACA
AGACCTGTATGCAATCGATCGGCATAGGTAGTTTTTCCCTGGTTTAATACATGTGCAACC
TGAATATCCCTATGAAAGGAAGCATCTTCCACATCTGGTTTGGAAAAGCTCTAGCTATCT
TTGATTGGATACCAACGAATCATGGTTTTCAGTAAACAAAAACTTATCAAAGTTCAAAGA
CTGGTATAACGCTTTTGCCCAAATAAAACTGATCAATAGACTACAAAAATCTCCTTATAG
ATCATTTCTACTGAAGATTTGTAGTTCGTTTTTCTTCCACACTAAGACTTAGTGTATTTG
ATTGGTGCATATAATGTAGTTTTTCCAGCAAAACACAACCTCCCTTGCAAATAACATAGT
CTGTTGACTTTCTTTACTCACTTTGGCTGTTTTAGCTATATTTAGGAGATCCAGCAGTGT
CAACTATAGCCGTGAGACTGATTTTGAGCTTCCATTTCTTCTGTTTGCAGAGGTTGCTAC
GTATGGTTGATGGATTGAACTTCAAGGAATTTGTTTCGTTTCTCTCTACCTTCAGCACAA
GGGCCAGCTTTCAGCAAAAGATTGAGTGTAATGCTCATCATGTTTCTTTTCCTCTCTTTG
CTGTCTATCTTGAAAGGAGTATATGTTGGTTTGGATCTCTCTGAATTCTGATCCTTATGA
TGACTAATTTGCTTGTTTGGTGTTGATTTGGTCTGTGTTTCATTGATCAGTGATGTTTAA
GGTGTATGACATTGATGGCAAGGGGAAAGTAAGCTTCAAGGACCTGGTAGAGGTTTTACG
GGACCTAACGGGCTCATCCATGTCAGAGCAACAAAGAGAGGTTCTCATTTGGTTCAATCC
TGTATTTCATTGAATTGTACGTTCACTTGCAAGTACACTGACTAAATCAACAACATCAAA
TGTGACTGTTCCCTTGTTTCCTCTTCAAATAATTAGTATCCTGCCATCATAAACACATCA
AGTTGTTTCCAAAATGAAGGGGGCCCTGACACTAAATTGTAGATTTCTTCATTGCAGCAA
ATGCTCAGAGTAGCTTTCTTCGCACTGTAGTTAAAAAATATAGTTTGTGTGGAACCCATC
CTTATATATCTAAAAGCTCAACAATATCCAGATTTTATGATATTTGTACATCCATAAGAC
TTAGCCTGAAATCAGTGCTCTCTCTGAATATTTGTAGGCAATATTACCCTTTTGGGCATT
ATTTCTAGCATAGCCTACTGCCCTACTACCTCACCTACATAGTACTCCCTCTGGTCCAAA
TTATAAGATGTTTTGGGAGGCTAAAATAGGCTAACAAAATGTCTTATAATTTGGGACGGA
GGTAGTACTAAATATAAGGTAGTTACCTAGAGTGGAACATTAGAAACCATGTTATGCTCT
ACTAATGTGCAAGGAGGCTGGGATCTAAATAAGAGCAATCCAGTCACAGATCCAAGAATT
GTTTTGTCCACTAATAACTACTCCCTCCGTTCCTAANNNTAAGACCTTTTAGAGATTCCA
CTATAGACTACATACGGAGCAAAANNNNNNNNNNNNNNNNNNAAAATATGTCTATATACA
TCCGTATAAAGT