Contig Data
morexGenes
Links



Map Locations of contig_1570014 (4955 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1570014

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_15169 1 2955 bp MLOC_15169.1 Available Available LOC_Os03g60910.1, FRAME:-1, EVALUE:0.0, 13103.m06693 protein PPR repeat domain containing protein, putative, expressed





CDS Structure of MLOC_15169






Contig Sequence (4955 bp)

>contig_1570014 4955 assembly3_WGSMorex_rbca.fasta
TCATCTGATGAGATCCCCTCCCCATGCCTCCAACCATGTGCCAAGCGTGTGGTATTTTTT
CTCCCGTNNNAACGCACGGGCCCTTTTGCTAGTTCACCTAATCTTCATCGTTTTAACTCA
CACGTGACATATATTCTCAAAAAAAAAACTCACACTTGACATACCTTCAAAAATAAACAA
GATACTAGAATACAAGAATTCGAGCTAGGTGCATTGCAAAAAAAAAAAGGTTAACCAAAA
TTTTCTAAATAAACAAACGTGTATTACAAGATGTTTACACCTTTAAACACCAGAACTCCA
GCAGCTTACATACAACAGTTATCATGCAGTTCTACAAAACTCCTAGCTTCTACCTCTGCC
AGAAATGTTTCGCCGAGACTCACCAGGAGGATGAGGGTGCTGCCATGTTTTACAGTGTGG
CATCTTTGCCCCAGTTGAAACCAAAAAATAAATTCATGCTTGCTCGATTGAAAGCACTGA
GATGGCGATATGGAAGGAAGTGAGCCAACTATTTATCACTAGCAACAACAAACATGCATA
ATCTGGTCCTACCTACATAGCACTAAATCCTGAGATGAACCTGAAGTCCACAGCAATGTC
CAACGTGTCAGGAGCTCTTGCACGTACCGCTCTTCTGTTCTGGGCAAGATGCACAAAATT
CGCAGCAGCAGCACCCGCTGGGTACAATTGAATGAAGCGAGCCGCTGCAAAGGGATGGTA
TCTATGGTCATTCTTGTCTCACAGGCATGATGAGCTGAACAGGCTGGATGCCCAAACCCC
AAAACTGCTATTCTGCACCTCGTCTTCCACTGGCTGTCAACCAGATAATACTGTATCCGC
AACCCTGGGAGATCACAGCGCGAGGAGCTCCGACTCCTTCTCTTCTTCTACCAACGATTC
TGCGGCAGAATGGGCCGAGCCGTTCTCCACCTGGGGCTGCTCCCGGGTGTATACTTTCGA
GCCAGGGGGCGGCAGACGGGAGTCCGTCATGTGGACGAAGCCCGGGATGGCCGCGCCGTT
TGAGGAATCTATGGCCGCCTGCAGCTTTTTCAGCTGGGACTTCAGGCATATGACTCGCCC
CTTGTTCCATTTTGGGTAATGGAACGATGCCGACAGCGTGTCGTTGAGAAAGGAGTACAC
AACTTTCGAGATCGGTAGTCCTCTTGTGACCGTGCTTTTCTCCATCTCCCCCCTCCTGGC
AGTAACAAAAACTGTCAGGCCAACGTAGAAAAGAGAAAAATATTGTTACAAAAGGTTAAT
TGTTTCTGTGAAAATTCAACCATGGGCACGATAATCTATAAGGATATCAAATAATTCCTA
CTACAAAGGGACTTTGCTCTAAGGGAATAATGTACTTATAATCCACTGAAGCAGCTTAAA
ATCAACTTCTATTTTTTGCAAACTTTTTCTTCTGGAAATGATATATATTTATGTTCTTTT
TCTGCAGCCCTCCATTCAAGTAGAACTAGCACTGCACGCAAATGACCAATGGAGGCCGGG
CTCCATTGAGCTCGTTTAAAAAAAACATATTTATATAGCGCAAAAAAAACTGAAAAAAAA
TGTATATACACAAATACATGTTTAACACGTCTAAGAAAAGTTTCAGAATGATATACTTTC
ATACGTGGCATACACAAAATAGACAAATACGTAAATGAAAATAGGCCTTTTTTTGTTGTT
GTGGGGCCTAGGTTTTGTCTTTTTTGCACAGCATACAAATCATAATAAGCCAGATCCGTC
ACAAATTTGTACAAGTTTTCACAGGATTGTTTTTGATTTTTTTTAAACTCGGAAATATCA
TTTTCGGAGATTTAAAAGAAGGGGGCTCCATGGAGCCCGGCCTCCAAAAATTTGCACTCT
AGCACTGCACTGCTTCCTAGGAAAATGACAGGAGCATTGCCAATTCTAGACAAGAAGAAA
GCATTGTCACAGCAGTCTAAGATGAACTTCCTTTTTGTGAGCAAATCAATCAAAATAAAC
CGATTCCAGAGCAATTAGAGAATAAAGCTACCACAACATAGAAACAGAACATGATAATAG
GAAAGGAACATCGATTTAGGTTGAAAGCTTACAGTACAACAACAGAGGCCAGTTGGGGAA
GATCTTTCTCTCTTTTTACTCTGGCGTAAAGTTTATTGAGCCATACTGACACAGCCACTA
ATGCTCCACCAACTGACATCCTGAAATGTAAACAAACCTAGTAAAGACTGATGACAAATA
TAAAACTGGACCAGTAAATGAAAAGACAGCAAATAGAAAATTATATTACCTATGTACATC
TAGAGACCAGACCAGCTTGGTGTCACGGAATAATTCAGGGAAGAGCCCATAACTTACTGC
ATGATCTAGAACCCTTGCAGCCCGAGCCTTCTGGCCGAACCACCAAAGCACATCAAGGAG
AGCATTAAAAAATCGTAAACTGTAGTCACATCCTTCCAAGTTACTGCTGTCAAGGACATA
TTCAACCATTTGCCAATTAGAGCTATCATCGTACTCCCCCTTTATCATGGAAGCAATCAC
TTGATGTGTATTACTAGCACGATTTGTTTTCATTTCTTCCAGCAAATCATAAGCATCAGC
CCACCTGAAATCACAAATCGATTACAGTGCAGTGAGATCACATTAGAAGCATTTAAAAAA
CACTGTAAGCTGCAAAAAGTAGAGAAAAGATAAATCCCAGGTCACTTCTGGCTATATATT
ATGTACAATGTAAGTTGCAACAGACATAAGTATGCCTGCATCAGATCATTTTACTTCTGG
CTATGTATTATGCCAATGTTGCCTGTATGATGCAGGTCATATCTAGGTCAGTAGATCCAA
AAGATTTAAGCATGATAAATACCAGTAATAGCACACACAATGAAAAACAGAGGAGTAACA
TATGGTCGTTTGGATTTATGTTCCCTTCCTAGTTCAAACTTTGAGTAGCCACCGCCGCCG
TCACCACCTCTCCATGGACGCCGGCGGGAGCACCTGAAGTGCAGGACAAGGTAATCTCCA
TCTCTACTACCGGAATCTGCTAGCCCAGGAGATCTAGTTGATCTAACAGTTCAAACTTTG
AGTAGCTATCTTCAAAAATAAAAAGATGAGCGGCAGCTCCAACTGAAGGTCCAAAGTTTG
TAAATTTTCTTGTTCTCTTGCCCGGTGAGCTAGTCTGCTTGCTTAGGGGCAGTGAGTTGA
TGGTCAGATTTGTGAAGTACCTAACTGAAGATCCGAAGTTTGTACATATTTTAACAGAAA
TAGTTAAACATAATTGGCACAGGCTTCATTTCAATGTTTGCATTCAAACAGTCAGCAATG
TTCACGAGAGAACAGAAGTTTGACACATTATCAAGGCGAATAGTTCTGCTTGACCAATAC
CTGTCGTTCCTTGCATAGAGTGACAGCATCATGCAATAAGCAATAATGCTAGGCACAGCC
ATGTTGGATCTGATCTCTTCAAACTGCTCTTTGCTCTCATCTATAACGCCCGCTATGCAG
TAGGCATTGAGTACTCCCTCAAGGGAGCGTTCATCAGGGTTAAACCTAGACTTGCGCATC
TCCATGTATGCCTTCACTGCATCATCCAACTGTGAACCCTGGCAATATGCTTCGATGAGG
GCATCATATGAATCTTTGCTTTTCTGAATACCAGCACTGTTGGTCATCCGAGAAAAGACG
GACTCAGCCTCCCGGAAGAGCCCGCCCTTGGCAAACACATTTGCAAGAGAATTGTACGTC
TCTATCGTTGGCAAGCTACCAATTTCAGTCATCATGTTGAATGCAACATAGGCCTCCTGG
ATAGAGAAGATCATTGAAATATTAGATTTGCATCACCAAAGGGTTATCTTAAGAGTGAAT
CATATATCATAGAGCAGTATTTGGTTCGTAGACCGACCTCATACATAGCTGCATGACCGA
GGGCTTCAATTAGGCCAGTGTAGGCCTTTGCAGTAGGCACCATTCCTTCTTTGGTTATGT
AGTCAAGAACTTCTCTTGCATCCTCATGGAGACCACCCTGACCACACGCAGCCAAGACAC
CTTCACAGGTCTCCATGTCAGGTTCTATCCCCGTACGAAGCATATCATGGAAGAGCTCCA
CCACCTCCTTGAAAAAACCGCCGTCGCCGAATACATTGAAGAGCACATTGTAGGTGGCCG
TGTCTGGAGGTACAGCCGTTCTCATCTCACGGAAGAGCTCACGCACACCATCGAACCTCC
CCTGTTTTCCGTACTGATCGAGCAGGACACGGTATGTGGCAGCCGTGGGCGCACAGCCAT
CAGCCTGCATCTGCCGCAGCACGGCCACAGCTTCAGCGGTGGCACCAATCCGGGTGTGAG
CCTCCATGAGCCCGAGATACGCGGAGGGGTCCGGCGTGTGCCCTGTGTCCGCCATCTCAC
GGAACAGCTCTGCGACCCGGGACAGGTCGCCGGCATTGGCAAAGGCATCCACAATGTAGC
GGTAGGACGCGTTGTCCGGCATGATGCCTGCCTCCAGCATGGTGTGCAGCAGCATCTCGG
ACTGGTCGCTGAGGGAGCGCACTGCCGCGGCGGCGAGGAGCGTGTTGTAGGTGGTGAGGT
CGGGGCGCACGGCCGGGGAGGGGTCGTGGCGCATCTCGGCGAAGAGGCCGAGGAGCATGT
CGAAGGGGACGGGCGGGTCGGCGGCGCGGGCGCAGGCGGCGAGCACGGTGTTGTAGGTGG
CGGCGGTGGGGGCGACCCCGTGGGCCTTCATCTGGTCGAGCAGGGCGCGGGCGTCGTCGT
GGAGCGCGTTGCGGGCGTAGGCGGCGATGAGGGAGGTGTAGGAGAGCGCGGTGCGGGCGT
CGGCGGGGAGGTCCTGGAAGACCTCGAGGCACTTGTCGAGGAGGGCGGGGCCCTGGCGGC
CGAGCACGCCGATGACAATGGCGTGGATGTGCTCGTCGGGGCGGCACCAGGACTGGCGCT
GCATGTACTTGAAGAGGCGCATGGAGCGCTGCCAG